Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 0.0e+00 1901.3 941 100.0
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 0.0e+00 1874.0 944 98.7
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 0.0e+00 1727.2 946 93.0
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 0.0e+00 1672.1 969 88.5
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 0.0e+00 1614.0 944 89.0
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 0.0e+00 1485.3 1027 77.3
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 0.0e+00 1429.8 1007 76.4
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 0.0e+00 1394.8 1015 73.7
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 0.0e+00 1391.3 1020 73.8
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 0.0e+00 1390.2 1015 73.3
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 0.0e+00 1323.5 973 73.4
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 0.0e+00 1195.3 598 99.7
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 0.0e+00 1163.7 1020 63.7
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 9.2e-293 1010.4 979 58.4
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 5.7e-226 788.5 1081 44.3
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 1.0e-222 777.7 1065 45.0
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 6.5e-222 775.0 1005 46.4
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 3.2e-221 772.7 1014 45.9
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 5.5e-221 771.9 1075 44.9
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 2.1e-220 770.0 993 45.6
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 1.0e-219 767.7 1058 45.7
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 5.2e-219 765.4 1124 42.8
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.1e-216 757.7 1015 45.6
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 1.8e-216 756.9 1013 45.5
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 7.2e-213 745.0 1179 41.6
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 1.4e-211 740.7 1110 42.9
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.3e-211 740.0 1116 42.0
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 3.0e-211 739.6 1093 41.9
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 5.2e-211 738.8 1065 45.1
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 8.3e-209 731.5 1090 42.6
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 5.4e-208 728.8 1127 42.1
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 9.1e-208 728.0 1112 42.0
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 9.1e-208 728.0 1014 45.1
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 2.7e-207 726.5 1109 41.0
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 2.7e-207 726.5 1073 43.3
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 2.9e-206 723.0 1144 40.2
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.8e-206 722.6 1114 41.0
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 1.5e-205 720.7 1136 41.2
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 3.3e-205 719.5 1104 40.9
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 7.2e-205 718.4 1003 43.9
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 6.1e-204 715.3 1110 40.8
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 1.0e-203 714.5 1074 42.5
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 2.3e-203 713.4 1174 40.2
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 4.0e-203 712.6 1173 40.6
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 4.0e-203 712.6 1112 40.8
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 5.2e-203 712.2 1129 41.1
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 2.6e-202 709.9 962 45.2
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 5.7e-202 708.8 1118 41.1
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 9.8e-202 708.0 958 43.7
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 2.2e-201 706.8 1122 40.1
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 3.5e-199 699.5 995 44.0
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 4.5e-199 699.1 995 44.5
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 7.8e-199 698.4 990 43.6
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 3.3e-197 693.0 1031 41.7
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 7.3e-197 691.8 1166 39.8
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 8.0e-196 688.3 1114 39.8
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 8.0e-196 688.3 589 60.1
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 4.0e-195 686.0 1005 42.5
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 5.2e-195 685.6 1018 42.0
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 5.2e-195 685.6 893 45.9
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 6.8e-195 685.3 1006 42.2
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 1.2e-194 684.5 1013 42.2
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 7.5e-194 681.8 1129 40.2
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 9.8e-194 681.4 986 42.2
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.9e-193 679.9 1192 38.2
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 1.1e-192 677.9 1034 40.8
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 1.6e-191 674.1 1129 39.3
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 7.8e-191 671.8 1108 39.8
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 1.0e-190 671.4 553 59.7
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 1.3e-190 671.0 978 41.9
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 3.9e-190 669.5 1022 41.4
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 2.1e-188 663.7 1093 40.0
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 2.1e-188 663.7 1042 41.2
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 2.1e-188 663.7 867 44.8
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 1.8e-187 660.6 1055 41.1
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 4.0e-187 659.4 1087 40.8
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 2.0e-186 657.1 1156 39.4
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 6.4e-185 652.1 892 43.5
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 1.4e-184 651.0 870 44.1
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 1.9e-184 650.6 899 43.6
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 1.2e-183 647.9 1090 40.5
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 1.2e-183 647.9 1001 41.7
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 3.9e-182 642.9 1087 39.3
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 8.6e-182 641.7 1113 38.5
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 9.5e-181 638.3 915 42.5
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 2.1e-180 637.1 844 44.1
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 3.1e-179 633.3 599 55.6
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 1.2e-178 631.3 932 42.7
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 2.1e-175 620.5 1083 39.3
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 7.8e-175 618.6 957 41.0
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 3.6e-172 609.8 957 40.8
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 5.2e-171 605.9 946 41.4
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 3.0e-166 590.1 1020 39.1
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 1.3e-164 584.7 563 53.6
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 4.8e-164 582.8 851 43.1
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 1.1e-160 571.6 889 39.9
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 4.3e-157 559.7 985 38.0
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 9.6e-157 558.5 994 37.3
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 5.8e-154 549.3 568 51.6
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 6.5e-145 519.2 699 45.1
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 6.2e-140 502.7 1129 35.2
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 3.0e-126 457.2 872 37.2
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 1.8e-123 448.0 414 55.8
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 7.7e-122 442.6 750 35.6
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 3.3e-117 427.2 312 66.7
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 4.4e-117 426.8 384 57.6
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 4.4e-117 426.8 549 43.7
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 7.0e-115 419.5 770 37.9
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 4.2e-112 410.2 505 42.2
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 5.2e-110 403.3 541 44.0
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 3.3e-109 400.6 676 38.9
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 8.5e-105 386.0 435 48.0
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 1.6e-103 381.7 515 42.5
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 6.1e-95 353.2 867 33.6
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 2.8e-87 327.8 690 36.5
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 5.1e-65 253.8 229 57.6
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 2.8e-63 248.1 221 55.7
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 1.2e-61 242.7 652 31.4
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 4.9e-28 131.0 272 32.0
C03p37040 Brassica napus HOM05D000922 ORTHO05D007418 2.5e-27 128.6 81 79.0
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 6.5e-20 104.0 209 34.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 5.7e-16 90.9 80 56.2
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 7.4e-16 90.5 162 40.1
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 2.2e-15 89.0 104 47.1
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 2.8e-15 88.6 57 64.9
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 3.7e-15 88.2 79 55.7
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 4.8e-15 87.8 64 62.5
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 1.1e-14 86.7 68 61.8
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 3.1e-14 85.1 53 69.8
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 7.9e-10 70.5 50 70.0
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 2.2e-07 62.4 79 48.1
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 6.3e-07 60.8 34 70.6
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 1.8e-06 59.3 77 46.8
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 4.1e-06 58.2 86 44.2


User provided reference genes

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