Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49829 Brassica carinata HOM05D001961 ORTHO05D020074 8.7e-254 879.8 433 100.0
C01p32520 Brassica napus HOM05D001961 ORTHO05D020074 1.2e-85 321.2 278 64.4
BolC1t03187H Brassica oleracea HOM05D001961 ORTHO05D020074 3.6e-58 229.9 281 53.0
Thhalv10010059m.g Eutrema salsugineum HOM05D001961 ORTHO05D002286 1.7e-55 221.1 660 32.0
BcaB02g10685 Brassica carinata HOM05D001961 ORTHO05D002286 7.0e-54 215.7 660 32.3
Sp5g14040 Schrenkiella parvula HOM05D001961 ORTHO05D002286 1.1e-51 208.4 664 31.8
BcaB05g23091 Brassica carinata HOM05D001961 ORTHO05D002286 7.3e-51 205.7 566 32.7
Thhalv10010060m.g Eutrema salsugineum HOM05D001961 ORTHO05D002286 1.2e-50 204.9 660 30.9
C03p72190 Brassica napus HOM05D001961 ORTHO05D002286 2.8e-50 203.8 666 30.9
BolC3t19515H Brassica oleracea HOM05D001961 ORTHO05D002286 2.8e-50 203.8 666 30.9
BcaC01g01759 Brassica carinata HOM05D001961 ORTHO05D002286 3.6e-50 203.4 653 30.6
A06p19750 Brassica napus HOM05D001961 ORTHO05D002286 6.2e-50 202.6 662 30.8
BraA06t25050Z Brassica rapa HOM05D001961 ORTHO05D002286 6.2e-50 202.6 662 30.8
BraA06t25054Z Brassica rapa HOM05D001961 ORTHO05D002286 6.2e-50 202.6 662 30.8
Sp5g14050 Schrenkiella parvula HOM05D001961 ORTHO05D002286 8.9e-49 198.7 666 30.8
CARHR156630 Cardamine hirsuta HOM05D001961 ORTHO05D002286 5.0e-44 183.0 652 29.1
BcaC01g01766 Brassica carinata HOM05D001961 ORTHO05D002286 1.1e-43 181.8 666 29.7
AL5G27230 Arabidopsis lyrata HOM05D001961 ORTHO05D002286 4.3e-43 179.9 660 29.7
CARHR156620 Cardamine hirsuta HOM05D001961 ORTHO05D002286 7.3e-43 179.1 653 28.3
Carub.0005s1404 Capsella rubella HOM05D001961 ORTHO05D002286 8.1e-42 175.6 662 27.9
AT3G47890 Arabidopsis thaliana HOM05D001961 ORTHO05D002286 3.4e-40 170.2 660 28.3
AT3G47910 Arabidopsis thaliana HOM05D001961 ORTHO05D002286 3.4e-40 170.2 660 28.0
C01p32530 Brassica napus HOM05D001961 ORTHO05D020074 3.7e-39 166.8 87 96.6
AL5G27220 Arabidopsis lyrata HOM05D001961 ORTHO05D002286 4.9e-39 166.4 664 28.5
BolC1t03189H Brassica oleracea HOM05D001961 ORTHO05D020074 1.9e-38 164.5 87 95.4
Carub.0005s1403 Capsella rubella HOM05D001961 ORTHO05D002286 5.4e-38 162.9 667 28.0
Aa31LG4G16560 Aethionema arabicum HOM05D001961 ORTHO05D002286 2.3e-33 147.5 669 27.2
BraA01t02491Z Brassica rapa HOM05D001961 ORTHO05D020074 2.3e-33 147.5 77 94.8
Cpa.g.sc17.186 Carica papaya HOM05D001961 ORTHO05D002286 6.6e-28 129.4 347 29.7
Aa31LG11G1000 Aethionema arabicum HOM05D001961 ORTHO05D002286 1.6e-26 124.8 671 24.9
Cfa019014 Carpinus fangiana HOM05D001961 ORTHO05D002286 4.7e-26 123.2 355 30.1
Duzib205G1945 Durio zibethinus HOM05D001961 ORTHO05D002286 8.1e-26 122.5 336 30.1
Haze_07394 Corylus avellana HOM05D001961 ORTHO05D002286 1.4e-25 121.7 356 30.1
Duzib068G1318 Durio zibethinus HOM05D001961 ORTHO05D002286 1.4e-25 121.7 598 25.4
GSVIVG01008079001 Vitis vinifera HOM05D001961 ORTHO05D002286 1.8e-25 121.3 564 26.4
COL.COLO4_35465 Corchorus olitorius HOM05D001961 ORTHO05D002286 2.4e-25 120.9 336 29.8
Gorai.003G070500 Gossypium raimondii HOM05D001961 ORTHO05D002286 1.5e-24 118.2 331 29.9
RcHm_v2.0_Chr7g0180371 Rosa chinensis HOM05D001961 ORTHO05D002286 1.5e-24 118.2 338 30.2
Gohir.A03G064400 Gossypium hirsutum HOM05D001961 ORTHO05D002286 2.6e-24 117.5 331 30.2
A06p19710 Brassica napus HOM05D001961 ORTHO05D002286 5.8e-24 116.3 201 42.8
Gohir.D03G090700 Gossypium hirsutum HOM05D001961 ORTHO05D002286 5.8e-24 116.3 331 29.6
Potri.015G066500 Populus trichocarpa HOM05D001961 ORTHO05D002286 7.6e-24 115.9 345 29.3
Thecc.03G077100 Theobroma cacao HOM05D001961 ORTHO05D002286 7.6e-24 115.9 337 30.0
Gohir.D11G032100 Gossypium hirsutum HOM05D001961 ORTHO05D002286 1.7e-23 114.8 323 31.0
Gohir.A11G028810 Gossypium hirsutum HOM05D001961 ORTHO05D002286 2.2e-23 114.4 323 30.0
TWI81G0197 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 2.2e-23 114.4 355 27.6
Hma1.2p1_0002F.1_g003390 Hydrangea macrophylla HOM05D001961 ORTHO05D002286 4.9e-23 113.2 333 28.8
Gorai.007G034900 Gossypium raimondii HOM05D001961 ORTHO05D002286 8.4e-23 112.5 323 30.7
Atru.chr9.2337 Acer truncatum HOM05D001961 ORTHO05D002286 1.4e-22 111.7 345 29.6
Lj5C117T8 Lonicera japonica HOM05D001961 ORTHO05D002286 1.9e-22 111.3 326 30.4
Lj9C457G12 Lonicera japonica HOM05D001961 ORTHO05D002286 4.2e-22 110.2 308 29.5
FAN04G1134 Fragaria x ananassa HOM05D001961 ORTHO05D002286 7.1e-22 109.4 339 29.5
FAN08G2604 Fragaria x ananassa HOM05D001961 ORTHO05D002286 2.7e-21 107.5 339 28.6
THA.LOC104821450 Tarenaya hassleriana HOM05D001961 ORTHO05D002286 3.5e-21 107.1 538 26.6
Lsat_1_v5_gn_1_11560 Lactuca sativa HOM05D001961 ORTHO05D002286 4.6e-21 106.7 414 28.7
FAN13G0464 Fragaria x ananassa HOM05D001961 ORTHO05D002286 6.0e-21 106.3 339 28.0
Prupe.5G184600 Prunus persica HOM05D001961 ORTHO05D002286 6.0e-21 106.3 349 28.9
Manes.14G073702 Manihot esculenta HOM05D001961 ORTHO05D002286 7.8e-21 105.9 346 28.3
TWI15G0443 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 1.0e-20 105.5 676 23.5
Dinv38651 Davidia involucrata HOM05D001961 ORTHO05D002286 8.7e-20 102.4 625 23.5
Ciclev10018472m.g Citrus clementina HOM05D001961 ORTHO05D002286 1.9e-19 101.3 500 25.4
Sabra15G0091600 Salix brachista HOM05D001961 ORTHO05D002286 1.9e-19 101.3 349 27.5
Actinidia37665 Actinidia chinensis HOM05D001961 ORTHO05D002286 3.3e-19 100.5 328 28.4
Lalb_Chr12g0201211 Lupinus albus HOM05D001961 ORTHO05D002286 3.3e-19 100.5 347 28.5
Manes.06G097300 Manihot esculenta HOM05D001961 ORTHO05D002286 5.6e-19 99.8 348 28.4
Sed0025522 Sechium edule HOM05D001961 ORTHO05D002286 7.3e-19 99.4 217 32.3
Eucgr.B00398 Eucalyptus grandis HOM05D001961 ORTHO05D002286 1.3e-18 98.6 334 27.5
vmacro19421 Vaccinium macrocarpon HOM05D001961 ORTHO05D002286 1.6e-18 98.2 226 31.4
Sabra12G0051100 Salix brachista HOM05D001961 ORTHO05D002286 2.1e-18 97.8 210 34.8
Oeu039544.2 Olea europaea HOM05D001961 ORTHO05D002286 3.6e-18 97.1 328 28.0
CSS0014551 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 4.8e-18 96.7 618 22.5
CSS0045618 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 4.8e-18 96.7 618 22.5
Dinv19903 Davidia involucrata HOM05D001961 ORTHO05D002286 4.8e-18 96.7 226 31.4
Sc04g0002330 Simmondsia chinensis HOM05D001961 ORTHO05D002286 8.1e-18 95.9 347 28.0
Cc04_g15870 Coffea canephora HOM05D001961 ORTHO05D002286 1.1e-17 95.5 355 26.5
CsaV3_1G002070 Cucumis sativus L. HOM05D001961 ORTHO05D002286 1.1e-17 95.5 203 33.0
Lsat_1_v5_gn_5_18460 Lactuca sativa HOM05D001961 ORTHO05D002286 1.1e-17 95.5 284 28.5
Actinidia34975 Actinidia chinensis HOM05D001961 ORTHO05D002286 1.4e-17 95.1 225 30.7
MD14G1192000 Malus domestica HOM05D001961 ORTHO05D002286 1.4e-17 95.1 221 32.6
ClCG06G016460 Citrullus lanatus HOM05D001961 ORTHO05D002286 3.1e-17 94.0 203 34.0
Rhsim08G0161300 Rhododendron simsii HOM05D001961 ORTHO05D002286 3.1e-17 94.0 226 31.0
Dinv33700 Davidia involucrata HOM05D001961 ORTHO05D002286 6.9e-17 92.8 291 28.2
TWI60G1556 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 9.0e-17 92.4 220 31.4
Potri.012G071900 Populus trichocarpa HOM05D001961 ORTHO05D002286 1.5e-16 91.7 215 34.0
TAR374G1240 Trochodendron aralioides HOM05D001961 ORTHO05D002286 2.6e-16 90.9 359 25.1
Zm00001eb005070 Zea mays HOM05D001961 ORTHO05D002286 3.4e-16 90.5 309 25.9
MELO3C017148.2 Cucumis melo HOM05D001961 ORTHO05D002286 4.4e-16 90.1 203 31.5
HanXRQChr05g0155261 Helianthus annuus HOM05D001961 ORTHO05D002286 7.6e-16 89.4 299 28.8
Lalb_Chr13g0298141 Lupinus albus HOM05D001961 ORTHO05D002286 7.6e-16 89.4 193 34.2
QL10p014874 Quercus lobata HOM05D001961 ORTHO05D002286 7.6e-16 89.4 347 26.2
VMungo1215G0372 Vigna mungo HOM05D001961 ORTHO05D002286 7.6e-16 89.4 348 25.3
MSTRG.11404 Avicennia marina HOM05D001961 ORTHO05D002286 9.9e-16 89.0 616 24.5
Glyma.05G031000 Glycine max HOM05D001961 ORTHO05D002286 9.9e-16 89.0 341 26.7
Glyma.17G095800 Glycine max HOM05D001961 ORTHO05D002286 9.9e-16 89.0 340 26.8
Nitab4.5_0007282g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 1.3e-15 88.6 226 30.1
FvH4_5g15740 Fragaria vesca HOM05D001961 ORTHO05D002286 1.7e-15 88.2 339 26.3
FAN18G4418 Fragaria x ananassa HOM05D001961 ORTHO05D002286 1.7e-15 88.2 339 26.3
Lj1g0021908 Lotus japonicus HOM05D001961 ORTHO05D002286 1.7e-15 88.2 341 24.0
MD06G1185800 Malus domestica HOM05D001961 ORTHO05D002286 2.2e-15 87.8 482 25.3
Oeu020375.1 Olea europaea HOM05D001961 ORTHO05D002286 2.2e-15 87.8 333 25.8
AUR62008343 Chenopodium quinoa HOM05D001961 ORTHO05D002286 3.8e-15 87.0 332 25.6
Dinv33730 Davidia involucrata HOM05D001961 ORTHO05D002286 3.8e-15 87.0 255 28.2
Lj4g0028007 Lotus japonicus HOM05D001961 ORTHO05D002286 3.8e-15 87.0 342 26.3
Peaxi162Scf00009g00524 Petunia axillaris HOM05D001961 ORTHO05D002286 6.4e-15 86.3 226 30.1
CDE06G2189 Ceratophyllum demersum HOM05D001961 ORTHO05D002286 8.4e-15 85.9 616 23.9
Phvul.003G194200 Phaseolus vulgaris HOM05D001961 ORTHO05D002286 8.4e-15 85.9 348 25.3
Zm00001eb403430 Zea mays HOM05D001961 ORTHO05D002286 8.4e-15 85.9 309 24.6
Nitab4.5_0004478g0040 Nicotiana tabacum HOM05D001961 ORTHO05D002286 1.1e-14 85.5 226 29.2
arahy.Tifrunner.gnm1.ann1.DV6TYS Arachis hypogaea HOM05D001961 ORTHO05D002286 1.4e-14 85.1 341 24.6
arahy.Tifrunner.gnm1.ann1.LMB17M Arachis hypogaea HOM05D001961 ORTHO05D002286 2.4e-14 84.3 186 32.8
Hund02679 Selenicereus undatus HOM05D001961 ORTHO05D002286 2.4e-14 84.3 336 26.5
Hma1.2p1_0104F.1_g050400 Hydrangea macrophylla HOM05D001961 ORTHO05D002286 3.2e-14 84.0 226 29.2
AUR62021754 Chenopodium quinoa HOM05D001961 ORTHO05D002286 4.2e-14 83.6 335 25.1
Dinv33705 Davidia involucrata HOM05D001961 ORTHO05D002286 4.2e-14 83.6 260 28.8
Ah.02g113120 Amaranthus hybridus HOM05D001961 ORTHO05D002286 5.4e-14 83.2 336 24.4
PSO478G4671 Papaver somniferum HOM05D001961 ORTHO05D002286 7.1e-14 82.8 118 47.5
PSO161G0075 Papaver somniferum HOM05D001961 ORTHO05D002286 1.2e-13 82.0 64 64.1
PSO210G7105 Papaver somniferum HOM05D001961 ORTHO05D002286 1.2e-13 82.0 120 42.5
Nn3g17102 Nelumbo nucifera HOM05D001961 ORTHO05D002286 1.6e-13 81.6 236 29.2
Nn4g23006 Nelumbo nucifera HOM05D001961 ORTHO05D002286 2.1e-13 81.3 556 23.6
HanXRQChr08g0236941 Helianthus annuus HOM05D001961 ORTHO05D002286 2.7e-13 80.9 308 27.3
MBI01_g01232_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 2.7e-13 80.9 226 27.9
Oeu022639.1 Olea europaea HOM05D001961 ORTHO05D002286 2.7e-13 80.9 139 36.0
SalBow5G1786 Salvia bowleyana HOM05D001961 ORTHO05D002286 3.5e-13 80.5 353 24.1
SGA_v2.0_scaffold114G31883 Striga asiatica HOM05D001961 ORTHO05D002286 3.5e-13 80.5 488 24.2
EL10Ac5g10921 Beta vulgaris HOM05D001961 ORTHO05D002286 6.0e-13 79.7 191 31.4
CAN.G628.49 Capsicum annuum HOM05D001961 ORTHO05D002286 6.0e-13 79.7 225 28.4
DCAR_021541 Daucus carota HOM05D001961 ORTHO05D002286 6.0e-13 79.7 209 31.1
Solyc06g071120.3 Solanum lycopersicum HOM05D001961 ORTHO05D002286 7.9e-13 79.3 225 29.3
Sopen06g027420 Solanum pennellii HOM05D001961 ORTHO05D002286 7.9e-13 79.3 225 29.3
SGA_v2.0_scaffold7G04090 Striga asiatica HOM05D001961 ORTHO05D002286 7.9e-13 79.3 220 28.6
PGSC0003DMG400013181 Solanum tuberosum HOM05D001961 ORTHO05D002286 1.0e-12 79.0 235 27.7
Dinv33704 Davidia involucrata HOM05D001961 ORTHO05D002286 1.3e-12 78.6 261 28.4
C03p72140 Brassica napus HOM05D001961 ORTHO05D002286 1.7e-12 78.2 148 41.9
HPP92_023555 Vanilla planifolia HOM05D001961 ORTHO05D002286 1.7e-12 78.2 223 28.3
Medtr4g107470 Medicago truncatula HOM05D001961 ORTHO05D002286 3.0e-12 77.4 216 27.3
SalBow7G0691 Salvia bowleyana HOM05D001961 ORTHO05D002286 3.0e-12 77.4 487 23.6
A06p19720 Brassica napus HOM05D001961 ORTHO05D002286 3.9e-12 77.0 148 41.2
Ca_21858_v3 Cicer arietinum L. HOM05D001961 ORTHO05D002286 3.9e-12 77.0 216 28.7
Nitab4.5_0000003g0050 Nicotiana tabacum HOM05D001961 ORTHO05D002286 3.9e-12 77.0 225 28.0
Migut.I00114 Erythranthe guttata HOM05D001961 ORTHO05D002286 1.1e-11 75.5 346 25.4
Solyc03g113370.3 Solanum lycopersicum HOM05D001961 ORTHO05D002286 1.1e-11 75.5 235 26.8
Sopen03g032420 Solanum pennellii HOM05D001961 ORTHO05D002286 1.1e-11 75.5 235 26.8
CDE07G1845 Ceratophyllum demersum HOM05D001961 ORTHO05D002286 1.5e-11 75.1 542 23.1
Psat4g054160 Pisum sativum HOM05D001961 ORTHO05D002286 1.5e-11 75.1 216 26.9
TPR.G38388 Trifolium pratense HOM05D001961 ORTHO05D002286 1.5e-11 75.1 217 28.6
Ah.11g048820 Amaranthus hybridus HOM05D001961 ORTHO05D002286 1.9e-11 74.7 342 22.8
Migut.I00115 Erythranthe guttata HOM05D001961 ORTHO05D002286 5.6e-11 73.2 280 24.6
PGR083G2262 Punica granatum HOM05D001961 ORTHO05D002286 9.6e-11 72.4 221 26.7
Hund09373 Selenicereus undatus HOM05D001961 ORTHO05D002286 1.6e-10 71.6 64 54.7
CANSAT80G1878 Cannabis sativa HOM05D001961 ORTHO05D002286 2.8e-10 70.9 235 27.7
Peaxi162Scf00689g00564 Petunia axillaris HOM05D001961 ORTHO05D002286 2.8e-10 70.9 64 53.1
Nitab4.5_0000909g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 3.6e-10 70.5 95 46.3
PGSC0003DMG400033067 Solanum tuberosum HOM05D001961 ORTHO05D002286 4.8e-10 70.1 64 51.6
TAR622G0827 Trochodendron aralioides HOM05D001961 ORTHO05D002286 6.2e-10 69.7 55 60.0
Oeu006173.1 Olea europaea HOM05D001961 ORTHO05D002286 1.8e-09 68.2 175 29.1
PSO591G0439 Papaver somniferum HOM05D001961 ORTHO05D002286 4.0e-09 67.0 233 25.3
Oeu022619.1 Olea europaea HOM05D001961 ORTHO05D002286 5.3e-09 66.6 329 23.1
PSO832G1192 Papaver somniferum HOM05D001961 ORTHO05D002286 9.0e-09 65.9 62 53.2
MBI04_g20664_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 1.2e-08 65.5 100 41.0
Aqoxy3G03236 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 1.5e-08 65.1 230 24.3
Dinv33701 Davidia involucrata HOM05D001961 ORTHO05D002286 4.5e-08 63.5 268 27.2
unitig_744.g24389 Utricularia gibba HOM05D001961 ORTHO05D002286 1.3e-07 62.0 212 25.9
MBI04_g20665_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 3.8e-07 60.5 54 53.7
Eucgr.K02911 Eucalyptus grandis HOM05D001961 ORTHO05D002286 6.4e-07 59.7 114 34.2
ATR1153G111 Amborella trichopoda HOM05D001961 ORTHO05D002286 8.4e-07 59.3 184 28.8
CSS0004686 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 1.9e-06 58.2 155 27.1
CAN.G999.31 Capsicum annuum HOM05D001961 ORTHO05D002286 1.9e-06 58.2 65 46.2
SEGI_13866 Sequoiadendron giganteum HOM05D001961 ORTHO05D002286 1.9e-06 58.2 198 26.8
DCAR_026083 Daucus carota HOM05D001961 ORTHO05D002286 2.4e-06 57.8 65 44.6
Aqoxy4G02900 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 3.2e-06 57.4 154 29.2
Aqoxy4G02940 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 3.2e-06 57.4 154 29.2
GSVIVG01032594001 Vitis vinifera HOM05D001961 ORTHO05D010262 5.5e-06 56.6 65 44.6


User provided reference genes

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