Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49699 Brassica carinata HOM05D007330 ORTHO05D009368 2.5e-84 315.5 167 100.0
C01p33810 Brassica napus HOM05D007330 ORTHO05D009368 2.5e-84 315.5 167 100.0
BolC1t03342H Brassica oleracea HOM05D007330 ORTHO05D009368 2.5e-84 315.5 167 100.0
A01p26570 Brassica napus HOM05D007330 ORTHO05D009368 9.5e-84 313.5 167 99.4
BraA01t02587Z Brassica rapa HOM05D007330 ORTHO05D009368 9.5e-84 313.5 167 99.4
BcaB05g23421 Brassica carinata HOM05D007330 ORTHO05D009368 2.7e-78 295.4 167 93.4
Sp5g16210 Schrenkiella parvula HOM05D007330 ORTHO05D009368 1.2e-70 270.0 164 89.6
Thhalv10002688m.g Eutrema salsugineum HOM05D007330 ORTHO05D009368 2.0e-65 252.7 170 81.8
AT3G45050 Arabidopsis thaliana HOM05D007330 ORTHO05D009368 3.7e-59 231.9 168 79.2
Carub.0005s1083 Capsella rubella HOM05D007330 ORTHO05D009368 2.0e-57 226.1 167 74.9
CARHR150920 Cardamine hirsuta HOM05D007330 ORTHO05D009368 4.5e-57 224.9 164 78.0
THA.LOC104814822 Tarenaya hassleriana HOM05D007330 ORTHO05D009368 3.2e-55 218.8 167 72.5
Aa31LG4G14100 Aethionema arabicum HOM05D007330 ORTHO05D009368 5.5e-55 218.0 167 70.7
AL5G23540 Arabidopsis lyrata HOM05D007330 ORTHO05D009368 5.6e-52 208.0 167 70.1
CiPaw.13G117900 Carya illinoinensis HOM05D007330 ORTHO05D009368 1.6e-43 179.9 161 65.2
CSS0040476 Camellia sinensis var. sinensis HOM05D007330 ORTHO05D009368 1.1e-42 177.2 166 61.4
TAR636G1893 Trochodendron aralioides HOM05D007330 ORTHO05D009368 1.8e-42 176.4 143 71.3
Ciclev10029423m.g Citrus clementina HOM05D007330 ORTHO05D009368 4.1e-42 175.3 174 62.1
Manes.11G150100 Manihot esculenta HOM05D007330 ORTHO05D009368 6.9e-42 174.5 129 73.6
Thecc.09G347600 Theobroma cacao HOM05D007330 ORTHO05D009368 1.5e-41 173.3 152 65.1
FvH4_3g31190 Fragaria vesca HOM05D007330 ORTHO05D009368 3.4e-41 172.2 143 68.5
FAN11G3216 Fragaria x ananassa HOM05D007330 ORTHO05D009368 3.4e-41 172.2 143 68.5
RcHm_v2.0_Chr5g0057841 Rosa chinensis HOM05D007330 ORTHO05D009368 3.4e-41 172.2 145 69.7
PGR119G1592 Punica granatum HOM05D007330 ORTHO05D009368 4.5e-41 171.8 154 65.6
Gohir.D05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 5.9e-41 171.4 126 73.0
FAN25G0306 Fragaria x ananassa HOM05D007330 ORTHO05D009368 7.6e-41 171.0 143 67.8
Gohir.A05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 1.0e-40 170.6 126 72.2
COL.COLO4_34706 Corchorus olitorius HOM05D007330 ORTHO05D009368 1.7e-40 169.9 135 70.4
vmacro03274 Vaccinium macrocarpon HOM05D007330 ORTHO05D009368 1.7e-40 169.9 132 68.9
Dinv34698 Davidia involucrata HOM05D007330 ORTHO05D009368 6.5e-40 167.9 171 59.6
Eucgr.J00897 Eucalyptus grandis HOM05D007330 ORTHO05D009368 6.5e-40 167.9 128 70.3
Glyma.11G195100 Glycine max HOM05D007330 ORTHO05D009368 6.5e-40 167.9 119 73.9
Rhsim13G0098500 Rhododendron simsii HOM05D007330 ORTHO05D009368 6.5e-40 167.9 131 71.0
QL01p015978 Quercus lobata HOM05D007330 ORTHO05D009368 8.5e-40 167.5 133 68.4
MSTRG.18683 Avicennia marina HOM05D007330 ORTHO05D009368 1.4e-39 166.8 127 69.3
FAN21G2017 Fragaria x ananassa HOM05D007330 ORTHO05D009368 1.9e-39 166.4 143 64.3
Glyma.12G079000 Glycine max HOM05D007330 ORTHO05D009368 2.5e-39 166.0 119 73.9
Atru.chr3.3558 Acer truncatum HOM05D007330 ORTHO05D009368 4.2e-39 165.2 122 72.1
Cc01_g10610 Coffea canephora HOM05D007330 ORTHO05D009368 5.5e-39 164.9 114 74.6
Nn2g13766 Nelumbo nucifera HOM05D007330 ORTHO05D009368 5.5e-39 164.9 135 67.4
Potri.009G008400 Populus trichocarpa HOM05D007330 ORTHO05D009368 9.3e-39 164.1 133 67.7
Lalb_Chr19g0137021 Lupinus albus HOM05D007330 ORTHO05D009368 1.6e-38 163.3 114 71.1
CANSAT35G1795 Cannabis sativa HOM05D007330 ORTHO05D009368 2.1e-38 162.9 140 66.4
Ca_19301_v3 Cicer arietinum L. HOM05D007330 ORTHO05D009368 3.6e-38 162.2 141 66.7
Nitab4.5_0000567g0040 Nicotiana tabacum HOM05D007330 ORTHO05D009368 6.1e-38 161.4 126 67.5
MELO3C004968.2 Cucumis melo HOM05D007330 ORTHO05D009368 7.9e-38 161.0 143 65.7
Medtr4g057845 Medicago truncatula HOM05D007330 ORTHO05D009368 7.9e-38 161.0 134 67.2
Migut.N02576 Erythranthe guttata HOM05D007330 ORTHO05D009368 1.0e-37 160.6 161 55.3
Sed0025524 Sechium edule HOM05D007330 ORTHO05D009368 1.4e-37 160.2 166 57.2
SGA_v2.0_scaffold116G32214 Striga asiatica HOM05D007330 ORTHO05D009368 3.0e-37 159.1 103 75.7
CsaV3_1G013380 Cucumis sativus L. HOM05D007330 ORTHO05D009368 3.9e-37 158.7 123 69.9
Actinidia07167 Actinidia chinensis HOM05D007330 ORTHO05D009368 5.1e-37 158.3 164 58.5
DCAR_018785 Daucus carota HOM05D007330 ORTHO05D009368 8.8e-37 157.5 113 74.3
Lsat_1_v5_gn_1_63180 Lactuca sativa HOM05D007330 ORTHO05D009368 8.8e-37 157.5 120 73.3
MD11G1142300 Malus domestica HOM05D007330 ORTHO05D009368 1.1e-36 157.1 125 69.6
ClCG03G002650 Citrullus lanatus HOM05D007330 ORTHO05D009368 1.9e-36 156.4 123 69.1
Lj3g0015691 Lotus japonicus HOM05D007330 ORTHO05D009368 3.3e-36 155.6 124 66.9
Sopen04g002470 Solanum pennellii HOM05D007330 ORTHO05D009368 5.7e-36 154.8 133 61.7
Psat4g155560 Pisum sativum HOM05D007330 ORTHO05D009368 9.7e-36 154.1 125 67.2
TWI31G1101 Tripterygium wilfordii HOM05D007330 ORTHO05D009368 9.7e-36 154.1 167 56.3
Peaxi162Scf00064g00193 Petunia axillaris HOM05D007330 ORTHO05D009368 1.3e-35 153.7 126 63.5
CAN.G1577.6 Capsicum annuum HOM05D007330 ORTHO05D009368 1.7e-35 153.3 125 64.8
Ah.01g003130 Amaranthus hybridus HOM05D007330 ORTHO05D009368 2.2e-35 152.9 126 65.9
Solyc04g007410.4 Solanum lycopersicum HOM05D007330 ORTHO05D009368 3.7e-35 152.1 133 60.9
HanXRQChr11g0346411 Helianthus annuus HOM05D007330 ORTHO05D009368 4.8e-35 151.8 166 55.4
VMungo1127G0312 Vigna mungo HOM05D007330 ORTHO05D009368 4.8e-35 151.8 144 60.4
Sc15g0001620 Simmondsia chinensis HOM05D007330 ORTHO05D009368 6.3e-35 151.4 114 68.4
GSVIVG01031517001 Vitis vinifera HOM05D000070 ORTHO05D001255 6.3e-35 151.4 153 61.4
ECA248G2053 Erigeron canadensis HOM05D007330 ORTHO05D009368 2.4e-34 149.4 152 57.9
PSO339G1528 Papaver somniferum HOM05D007330 ORTHO05D009368 3.1e-34 149.1 166 55.4
Hma1.2p1_0569F.1_g180250 Hydrangea macrophylla HOM05D007330 ORTHO05D009368 5.3e-34 148.3 131 62.6
MBI18_g25263_MAGBIO Magnolia biondii HOM05D007330 ORTHO05D009368 4.5e-33 145.2 158 53.2
arahy.Tifrunner.gnm1.ann1.V5GM9G Arachis hypogaea HOM05D007330 ORTHO05D009368 5.9e-33 144.8 133 62.4
arahy.Tifrunner.gnm1.ann1.PP0PHB Arachis hypogaea HOM05D007330 ORTHO05D009368 7.7e-33 144.4 133 62.4
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 1.7e-32 143.3 112 65.2
Peaxi162Scf00597g00033 Petunia axillaris HOM05D007330 ORTHO05D009368 8.5e-32 141.0 130 60.8
Phvul.011G083600 Phaseolus vulgaris HOM05D007330 ORTHO05D009368 1.2e-30 137.1 98 70.4
Prupe.6G107600 Prunus persica HOM05D007330 ORTHO05D009368 2.3e-29 132.9 102 75.5
PSO801G0259 Papaver somniferum HOM05D007330 ORTHO05D009368 4.4e-28 128.6 164 50.6
AUR62022766 Chenopodium quinoa HOM05D007330 ORTHO05D009368 5.7e-28 128.3 135 56.3
Peaxi162Scf00958g00023 Petunia axillaris HOM05D007330 ORTHO05D009368 1.5e-25 120.2 89 71.9
Lj1C194T4 Lonicera japonica HOM05D007330 ORTHO05D009368 5.9e-25 118.2 131 58.8
Nitab4.5_0003325g0010 Nicotiana tabacum HOM05D007330 ORTHO05D009368 1.7e-24 116.7 99 66.7
Gorai.009G110400 Gossypium raimondii HOM05D007330 ORTHO05D009368 2.9e-24 115.9 100 66.0
PGSC0003DMG400005973 Solanum tuberosum HOM05D007330 ORTHO05D009368 2.9e-24 115.9 85 71.8
Lj1A195G28 Lonicera japonica HOM05D007330 ORTHO05D009368 3.8e-24 115.5 172 48.3
HPP92_007165 Vanilla planifolia HOM05D007330 ORTHO05D009368 3.8e-24 115.5 110 55.5
Os06g0731300 Oryza sativa ssp. japonica HOM05D007330 ORTHO05D009368 6.5e-24 114.8 72 69.4
Aqoxy2G01788 Aquilegia oxysepala HOM05D007330 ORTHO05D009368 1.1e-23 114.0 103 66.0
Cpa.g.sc65.31 Carica papaya HOM05D007330 ORTHO05D009368 1.1e-23 114.0 99 66.7
SEGI_17989 Sequoiadendron giganteum HOM05D007330 ORTHO05D009368 3.6e-22 109.0 133 44.4
Sabra09G0004900 Salix brachista HOM05D007330 ORTHO05D009368 4.7e-22 108.6 105 61.0
Pp3c18_13360 Physcomitrium patens HOM05D007330 ORTHO05D009368 3.0e-21 105.9 159 42.1
MD03G1125100 Malus domestica HOM05D007330 ORTHO05D009368 2.0e-20 103.2 56 83.9
AagrBONN_evm.TU.Sc2ySwM_228.4164 Anthoceros agrestis HOM05D007330 ORTHO05D009368 2.8e-19 99.4 134 44.0
CBR_g54316 Chara braunii HOM05D007330 ORTHO05D009368 6.3e-19 98.2 111 47.7
Hund08155 Selenicereus undatus HOM05D007330 ORTHO05D009368 6.3e-19 98.2 81 65.4
Haze_23760 Corylus avellana HOM05D007330 ORTHO05D009368 5.9e-17 91.7 151 45.7
Mapoly0184s0021 Marchantia polymorpha HOM05D007330 ORTHO05D009368 1.2e-14 84.0 126 44.4
SMO275G0064 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 4.7e-14 82.0 123 39.8
SMO367G0878 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 8.0e-14 81.3 123 39.8
arahy.Tifrunner.gnm1.ann1.N36MJA Arachis hypogaea HOM05D007330 ORTHO05D009368 2.8e-11 72.8 72 55.6
AUR62029217 Chenopodium quinoa HOM05D007330 ORTHO05D009368 6.3e-11 71.6 154 39.6
EL10Ac9g22568 Beta vulgaris HOM05D007330 ORTHO05D009368 8.0e-06 54.7 114 36.8


User provided reference genes

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