Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 1.4e-130 469.5 225 100.0
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 2.6e-129 465.3 225 98.7
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 2.6e-129 465.3 225 98.7
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 5.0e-128 461.1 225 97.8
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 2.3e-109 399.1 191 99.0
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 5.2e-109 397.9 191 98.4
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 2.6e-108 395.6 191 97.9
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 4.9e-107 391.3 191 96.9
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 1.8e-106 389.4 191 96.9
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 1.8e-106 389.4 191 96.9
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 4.1e-106 388.3 191 96.3
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 7.0e-106 387.5 191 96.3
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 7.0e-106 387.5 191 95.8
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 9.1e-106 387.1 200 92.0
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 1.6e-105 386.3 191 95.8
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 1.6e-105 386.3 191 96.3
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 1.6e-105 386.3 191 96.3
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 1.6e-105 386.3 191 96.3
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 4.5e-105 384.8 191 95.3
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 5.9e-105 384.4 191 96.3
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 5.9e-105 384.4 191 96.3
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 1.0e-104 383.6 191 95.8
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 2.9e-104 382.1 189 96.3
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 5.0e-104 381.3 225 83.6
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 5.6e-103 377.9 191 94.8
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 5.6e-103 377.9 191 94.8
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 7.2e-103 377.5 184 96.7
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.6e-102 376.3 188 94.1
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.0e-101 373.6 188 93.1
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 2.0e-100 369.4 191 93.2
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 2.6e-100 369.0 191 93.2
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 6.4e-99 364.4 191 91.6
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 5.4e-98 361.3 197 87.3
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 1.2e-97 360.1 191 90.6
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 7.8e-97 357.5 179 94.4
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 1.3e-96 356.7 211 82.9
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 8.6e-96 354.0 170 99.4
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 2.1e-94 349.4 167 99.4
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 4.7e-94 348.2 170 98.2
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 6.2e-94 347.8 209 79.9
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 1.8e-93 346.3 170 97.1
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 2.3e-93 345.9 193 84.5
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 3.1e-93 345.5 170 97.1
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 3.1e-93 345.5 170 97.1
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 2.6e-92 342.4 170 97.1
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 5.8e-92 341.3 170 95.9
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.7e-91 339.7 170 96.5
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.7e-91 339.7 170 96.5
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 2.2e-91 339.3 168 97.0
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 1.4e-90 336.7 168 96.4
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 4.1e-90 335.1 170 95.3
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 7.0e-90 334.3 166 96.4
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 7.8e-89 330.9 170 94.1
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 1.3e-88 330.1 185 85.4
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-88 330.1 170 92.9
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 2.3e-88 329.3 165 95.2
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 3.9e-88 328.6 177 89.8
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 4.7e-86 321.6 163 93.9
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 6.2e-86 321.2 170 91.8
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 2.3e-85 319.3 161 93.2
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 3.1e-85 318.9 166 92.2
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 4.4e-84 315.1 191 82.2
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 9.8e-84 313.9 168 88.7
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 8.3e-83 310.8 179 84.4
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 4.1e-82 308.5 191 78.5
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 9.2e-82 307.4 177 83.6
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 9.2e-82 307.4 193 78.8
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-80 302.8 164 87.8
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-78 297.0 169 86.4
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-78 296.6 164 87.8
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-77 293.1 197 72.6
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 4.0e-77 292.0 170 84.1
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 1.3e-75 287.0 153 91.5
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 2.2e-75 286.2 141 97.2
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 2.2e-75 286.2 141 97.2
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 6.4e-75 284.6 167 85.0
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 3.0e-72 275.8 135 97.0
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 6.6e-72 274.6 138 95.7
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 7.3e-71 271.2 167 82.6
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-69 267.3 135 94.1
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 5.8e-68 261.5 142 88.0
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 7.6e-68 261.2 138 91.3
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 7.6e-68 261.2 138 91.3
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 9.9e-68 260.8 155 82.6
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-66 257.3 132 92.4
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 9.3e-66 254.2 131 91.6
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-65 252.3 148 83.1
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 1.7e-64 250.0 172 77.3
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 2.3e-64 249.6 217 62.2
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 9.6e-63 244.2 192 68.2
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.8e-62 242.7 130 90.8
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-61 240.7 136 86.8
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 3.1e-61 239.2 192 67.7
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 1.5e-60 236.9 136 85.3
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-58 230.3 135 85.2
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 5.4e-58 228.4 138 84.1
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-57 227.3 127 86.6
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 2.5e-55 219.5 114 91.2
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 4.8e-54 215.3 114 91.2
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 1.8e-53 213.4 99 100.0
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 4.0e-53 212.2 148 73.0
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 5.3e-53 211.8 109 92.7
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 1.2e-52 210.7 100 98.0
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 6.4e-51 204.9 97 97.9
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 8.4e-51 204.5 96 99.0
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 8.4e-51 204.5 99 97.0
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 2.7e-49 199.5 115 86.1
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 4.6e-49 198.7 129 78.3
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 6.0e-49 198.4 153 60.8
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.8e-48 196.8 101 92.1
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 3.3e-47 192.6 182 51.1
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 9.6e-47 191.0 100 90.0
C01p34850 Brassica napus HOM05D001560 ORTHO05D004675 1.8e-45 186.8 91 96.7
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 1.2e-44 184.1 99 87.9
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 4.5e-44 182.2 94 90.4
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 7.6e-44 181.4 96 88.5
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.2e-43 179.9 102 85.3
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.1e-42 177.6 143 64.3
TPR.G40193 Trifolium pratense HOM05D001560 ORTHO05D004675 3.5e-41 172.6 79 98.7
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 7.9e-41 171.4 106 79.2
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 1.5e-39 167.2 89 89.9
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 1.3e-38 164.1 173 56.1
SHI36775 Sapria himalayana HOM05D001560 ORTHO05D004675 4.8e-38 162.2 87 86.2
SHI36786 Sapria himalayana HOM05D001560 ORTHO05D004675 4.8e-38 162.2 87 86.2
SHI36139 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-37 160.6 132 63.6
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 2.4e-37 159.8 172 52.3
CAN.G134.23 Capsicum annuum HOM05D001560 ORTHO05D004675 5.9e-36 155.2 74 97.3
Gohir.A03G134200 Gossypium hirsutum HOM05D001560 ORTHO05D004675 5.9e-36 155.2 74 97.3
Zm00001eb436070 Zea mays HOM05D001560 ORTHO05D004675 3.8e-35 152.5 74 95.9
Zm00001eb440310 Zea mays HOM05D001560 ORTHO05D004675 3.8e-35 152.5 74 95.9
Zm00001eb440380 Zea mays HOM05D001560 ORTHO05D004675 3.8e-35 152.5 74 95.9
Zm00001eb442180 Zea mays HOM05D001560 ORTHO05D004675 3.8e-35 152.5 74 95.9
Manes.01G049495 Manihot esculenta HOM05D001560 ORTHO05D004675 5.0e-35 152.1 74 93.2
SHI39097 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-34 151.0 81 86.4
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 3.2e-34 149.4 150 56.0
AUR62042344 Chenopodium quinoa HOM05D001560 ORTHO05D004675 2.1e-33 146.7 71 94.4
SHI36081 Sapria himalayana HOM05D001560 ORTHO05D004675 6.1e-33 145.2 74 90.5
SHI36375 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-32 144.1 74 90.5
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 2.3e-32 143.3 68 94.1
SHI38033 Sapria himalayana HOM05D001560 ORTHO05D004675 3.0e-32 142.9 74 90.5
Nitab4.5_0013170g0020 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.9e-32 142.5 72 91.7
SHI40902 Sapria himalayana HOM05D001560 ORTHO05D004675 3.9e-32 142.5 74 89.2
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 3.9e-32 142.5 93 71.0
SHI39123 Sapria himalayana HOM05D001560 ORTHO05D004675 5.1e-32 142.1 74 89.2
SMO053G0006 Selaginella moellendorffii HOM05D001560 ORTHO05D004675 5.1e-32 142.1 175 44.6
SHI36939 Sapria himalayana HOM05D001560 ORTHO05D004675 3.3e-31 139.4 72 90.3
SHI36627 Sapria himalayana HOM05D001560 ORTHO05D004675 7.4e-31 138.3 70 91.4
SHI43451 Sapria himalayana HOM05D001560 ORTHO05D004675 7.4e-31 138.3 74 87.8
SHI34635 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-30 136.3 72 87.5
Nitab4.5_0001127g0220 Nicotiana tabacum HOM05D001560 ORTHO05D004675 4.8e-30 135.6 74 85.1
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-29 134.4 135 58.5
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-29 134.4 135 58.5
SHI38213 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-29 134.0 74 86.5
SHI34631 Sapria himalayana HOM05D001560 ORTHO05D004675 3.1e-29 132.9 74 86.5
SHI27346 Sapria himalayana HOM05D001560 ORTHO05D004675 9.0e-29 131.3 71 87.3
SHI38099 Sapria himalayana HOM05D001560 ORTHO05D004675 5.9e-28 128.6 74 83.8
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 1.0e-27 127.9 92 70.7
BraSC48t46297Z Brassica rapa HOM05D045689 ORTHO05D043271 3.9e-24 115.9 55 96.4
Nitab4.5_0000661g0100 Nicotiana tabacum HOM05D001560 ORTHO05D004675 8.8e-24 114.8 64 84.4
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 2.0e-23 113.6 69 81.2
SHI33106 Sapria himalayana HOM05D000743 ORTHO05D000580 6.3e-22 108.6 59 91.5
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 2.4e-21 106.7 51 96.1
Prupe.2G039100 Prunus persica HOM05D001560 ORTHO05D004675 3.1e-21 106.3 61 88.5
CsaV3_5G015880 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.5e-18 96.7 49 89.8
SHI44216 Sapria himalayana HOM05D001560 ORTHO05D004675 4.2e-18 95.9 69 69.6
SHI35323 Sapria himalayana HOM05D001560 ORTHO05D004675 6.1e-17 92.0 58 77.6
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 5.1e-16 89.0 111 48.6
Nitab4.5_0019346g0010 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.1e-15 87.8 44 93.2
SHI38481 Sapria himalayana HOM05D001560 ORTHO05D004675 7.0e-13 78.6 181 34.3
Nitab4.5_0001152g0580 Nicotiana tabacum HOM05D001560 ORTHO05D004675 2.0e-12 77.0 45 77.8
SHI33107 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-12 76.6 50 74.0
EL10Ac7g17432 Beta vulgaris HOM05D001560 ORTHO05D004675 2.7e-09 66.6 35 85.7
SHI35288 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-08 63.5 69 49.3
Nitab4.5_0003709g0080 Nicotiana tabacum HOM05D012582 ORTHO05D011721 4.0e-08 62.8 30 93.3
DCAR_022732 Daucus carota HOM05D001560 ORTHO05D004675 5.2e-08 62.4 30 90.0
SHI36570 Sapria himalayana HOM05D001560 ORTHO05D004675 7.5e-07 58.5 33 84.8
Medtr8g059730 Medicago truncatula HOM05D001560 ORTHO05D004675 1.3e-06 57.8 43 58.1
SHI42054 Sapria himalayana HOM05D001560 ORTHO05D004675 4.8e-06 55.8 27 92.6


User provided reference genes

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