Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 2.9e-111 405.2 199 100.0
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 1.3e-108 396.4 200 98.5
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 1.3e-108 396.4 200 98.5
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 1.5e-107 392.9 199 98.0
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 4.3e-107 391.3 198 98.0
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 2.8e-106 388.7 196 98.5
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.1e-105 386.7 196 98.0
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 4.0e-105 384.8 196 96.9
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 1.1e-97 360.1 191 94.8
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 4.0e-97 358.2 181 98.3
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 4.5e-96 354.8 196 91.8
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 4.9e-95 351.3 192 93.8
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.1e-94 350.1 191 93.2
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 1.1e-94 350.1 191 93.2
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 7.1e-94 347.4 200 89.0
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 1.2e-93 346.7 190 92.1
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 1.2e-93 346.7 190 92.1
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 3.5e-93 345.1 192 92.2
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 3.5e-93 345.1 192 92.2
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 6.0e-93 344.4 190 91.6
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.3e-92 343.2 191 92.7
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.3e-92 343.2 191 92.7
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.3e-92 343.2 191 92.7
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.7e-92 342.8 190 91.1
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.7e-92 342.8 190 91.1
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.7e-92 342.8 190 91.1
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 2.3e-92 342.4 192 91.7
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 3.9e-92 341.7 191 91.6
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 8.7e-92 340.5 190 91.6
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 8.7e-92 340.5 190 91.6
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.1e-91 340.1 191 92.1
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 2.5e-91 339.0 194 91.2
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 3.3e-91 338.6 192 90.1
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 4.3e-91 338.2 191 91.1
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.3e-90 336.7 191 90.6
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 1.6e-90 336.3 192 89.6
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 2.1e-90 335.9 190 90.0
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.1e-90 335.9 191 90.1
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 2.8e-90 335.5 191 89.5
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 4.8e-90 334.7 190 88.9
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-89 332.8 191 90.6
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-89 332.8 191 90.6
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-89 332.8 191 90.6
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-89 332.8 191 90.6
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 6.9e-89 330.9 191 89.5
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.0e-88 329.3 191 89.0
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 2.6e-88 328.9 190 87.9
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 3.4e-88 328.6 191 89.5
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.3e-87 326.6 194 88.7
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 2.2e-87 325.9 190 89.5
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 2.9e-87 325.5 191 89.0
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 6.4e-87 324.3 191 89.0
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.1e-86 323.6 191 89.0
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 3.5e-85 318.5 191 86.9
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 3.7e-82 308.5 189 85.2
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 4.8e-82 308.1 192 87.0
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 4.8e-82 308.1 192 87.0
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 4.8e-82 308.1 192 87.0
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 4.8e-82 308.1 192 87.0
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 4.8e-82 308.1 192 87.0
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 4.8e-82 308.1 192 87.0
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 5.8e-80 301.2 191 82.7
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 1.0e-79 300.4 196 81.6
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 4.6e-77 291.6 196 80.1
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 2.8e-74 282.3 172 84.9
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.5e-72 276.6 170 85.3
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.6e-72 274.2 190 76.8
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 8.5e-71 270.8 136 98.5
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.3e-67 258.5 190 73.7
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 1.6e-66 256.5 196 74.0
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.6e-64 249.2 133 91.0
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.5e-62 242.7 134 90.3
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.4e-62 240.7 137 85.4
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 7.9e-61 237.7 126 92.9
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 2.0e-56 223.0 122 93.4
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.1e-54 217.2 117 92.3
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.6e-53 213.4 129 86.0
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 3.9e-52 208.8 129 81.4
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 6.7e-52 208.0 122 86.1
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.0e-51 206.5 152 73.7
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.4e-51 204.5 122 85.2
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 3.0e-44 182.6 115 80.9
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 9.7e-43 177.6 114 81.6
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 1.1e-41 174.1 107 84.1
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 3.1e-41 172.6 89 94.4
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 2.7e-40 169.5 89 93.3
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 5.9e-40 168.3 96 89.6
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 1.3e-39 167.2 100 88.0
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.7e-39 166.8 89 91.0
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.3e-36 156.4 93 87.1
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.7e-35 151.8 106 74.5
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 7.5e-35 151.4 75 97.3
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 4.8e-34 148.7 123 69.1
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 9.1e-33 144.4 81 87.7
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 2.0e-32 143.3 89 84.3
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 2.0e-32 143.3 89 84.3
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 1.6e-29 133.7 89 77.5
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 2.8e-29 132.9 68 94.1
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 6.1e-29 131.7 65 95.4
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.8e-28 130.2 84 82.1
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 4.0e-28 129.0 81 84.0
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 4.4e-27 125.6 92 72.8
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 1.7e-26 123.6 80 81.2
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.1e-25 120.9 62 93.5
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 2.4e-25 119.8 75 84.0
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 2.4e-25 119.8 98 65.3
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 7.0e-25 118.2 80 77.5
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.5e-24 115.5 69 81.2
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.8e-23 112.5 74 78.4
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 3.3e-22 109.4 80 77.5
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.4e-20 104.0 168 44.6
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 4.4e-19 99.0 60 83.3
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.3e-18 97.4 68 73.5
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 1.7e-18 97.1 97 55.7
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 3.2e-17 92.8 60 80.0
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.6e-16 90.5 62 77.4
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 3.5e-16 89.4 57 82.5
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 1.3e-15 87.4 48 85.4
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 5.6e-14 82.0 49 85.7
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 8.0e-13 78.2 67 61.2
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.3e-12 76.6 49 75.5
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 2.6e-11 73.2 63 60.3
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 7.5e-11 71.6 88 47.7
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 4.9e-10 68.9 48 72.9
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 6.4e-10 68.6 47 72.3
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 3.2e-09 66.2 47 72.3
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 9.2e-09 64.7 53 62.3
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 7.8e-08 61.6 53 60.4
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 7.8e-08 61.6 41 75.6
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 1.3e-07 60.8 28 96.4
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 2.3e-07 60.1 48 64.6
Nitab4.5_0000172g1260 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.6e-06 55.5 40 67.5


User provided reference genes

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