Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49567 Brassica carinata HOM05D007336 ORTHO05D009339 1.4e-63 246.1 124 100.0
C01p35170 Brassica napus HOM05D007336 ORTHO05D009339 7.6e-62 240.4 128 96.9
BolC1t03475H Brassica oleracea HOM05D007336 ORTHO05D009339 7.6e-62 240.4 128 96.9
A01p27330 Brassica napus HOM05D007336 ORTHO05D009339 1.0e-61 240.0 128 96.1
BraA01t02872Z Brassica rapa HOM05D007336 ORTHO05D009339 1.0e-61 240.0 128 96.1
BcaB04g20156 Brassica carinata HOM05D007336 ORTHO05D009339 7.4e-57 223.8 128 91.4
Sp2g06650 Schrenkiella parvula HOM05D007336 ORTHO05D009339 1.4e-55 219.5 124 88.7
Thhalv10023757m.g Eutrema salsugineum HOM05D007336 ORTHO05D009339 7.9e-51 203.8 126 82.5
AL1G65880 Arabidopsis lyrata HOM05D007336 ORTHO05D009339 1.5e-49 199.5 128 80.5
Aa31LG2G11600 Aethionema arabicum HOM05D007336 ORTHO05D009339 1.6e-48 196.1 128 81.2
CARHR289820 Cardamine hirsuta HOM05D007336 ORTHO05D009339 6.3e-48 194.1 128 78.1
AT1G56260 Arabidopsis thaliana HOM05D007336 ORTHO05D009339 1.4e-47 193.0 129 79.8
Carub.0002s0790 Capsella rubella HOM05D007336 ORTHO05D009339 6.5e-45 184.1 129 74.4
THA.LOC104805904 Tarenaya hassleriana HOM05D007336 ORTHO05D009339 4.8e-40 167.9 122 68.0
TAR362G0973 Trochodendron aralioides HOM05D007336 ORTHO05D009339 9.4e-36 153.7 115 67.0
MD04G1197300 Malus domestica HOM05D007336 ORTHO05D009339 1.6e-35 152.9 115 65.2
MD12G1210100 Malus domestica HOM05D007336 ORTHO05D009339 2.1e-35 152.5 115 65.2
Aqoxy2G02873 Aquilegia oxysepala HOM05D007336 ORTHO05D009339 3.6e-35 151.8 124 58.1
Prupe.6G317700 Prunus persica HOM05D007336 ORTHO05D009339 3.6e-35 151.8 115 65.2
Cfa006663 Carpinus fangiana HOM05D007336 ORTHO05D009339 7.9e-35 150.6 115 62.6
GSVIVG01031156001 Vitis vinifera HOM05D007336 ORTHO05D009339 2.3e-34 149.1 115 61.7
CiPaw.08G158700 Carya illinoinensis HOM05D007336 ORTHO05D009339 6.7e-34 147.5 115 62.6
COL.COLO4_03798 Corchorus olitorius HOM05D007336 ORTHO05D009339 6.7e-34 147.5 115 63.5
Manes.01G127100 Manihot esculenta HOM05D007336 ORTHO05D009339 8.8e-34 147.1 115 62.6
Duzib128G0390 Durio zibethinus HOM05D007336 ORTHO05D009339 1.1e-33 146.7 115 64.3
Lalb_Chr16g0391581 Lupinus albus HOM05D007336 ORTHO05D009339 1.1e-33 146.7 115 61.7
RcHm_v2.0_Chr3g0456501 Rosa chinensis HOM05D007336 ORTHO05D009339 1.1e-33 146.7 115 62.6
Atru.chr1.2192 Acer truncatum HOM05D007336 ORTHO05D009339 1.5e-33 146.4 124 58.9
Thecc.05G317300 Theobroma cacao HOM05D007336 ORTHO05D009339 2.6e-33 145.6 115 62.6
Gorai.007G303000 Gossypium raimondii HOM05D007336 ORTHO05D009339 4.4e-33 144.8 115 62.6
Psat0s3672g0040 Pisum sativum HOM05D007336 ORTHO05D009339 4.4e-33 144.8 115 58.3
Atru.chr1.2191 Acer truncatum HOM05D007336 ORTHO05D009339 5.7e-33 144.4 124 58.1
Migut.G00122 Erythranthe guttata HOM05D007336 ORTHO05D009339 1.3e-32 143.3 122 62.3
Ciclev10002848m.g Citrus clementina HOM05D007336 ORTHO05D009339 1.7e-32 142.9 115 60.9
Eucgr.H03266 Eucalyptus grandis HOM05D007336 ORTHO05D009339 2.2e-32 142.5 114 59.6
Gohir.D11G280800 Gossypium hirsutum HOM05D007336 ORTHO05D009339 3.7e-32 141.7 115 61.7
PGR031G1948 Punica granatum HOM05D007336 ORTHO05D009339 6.3e-32 141.0 121 57.0
Glyma.19G230700 Glycine max HOM05D007336 ORTHO05D009339 8.2e-32 140.6 115 59.1
Eucgr.H03264 Eucalyptus grandis HOM05D007336 ORTHO05D009339 1.1e-31 140.2 114 59.6
FvH4_6g06960 Fragaria vesca HOM05D007336 ORTHO05D009339 1.4e-31 139.8 115 60.9
Lj1g0024848 Lotus japonicus HOM05D007336 ORTHO05D009339 2.4e-31 139.0 115 54.8
FAN05G1709 Fragaria x ananassa HOM05D007336 ORTHO05D009339 3.1e-31 138.7 115 60.0
FAN05G3591 Fragaria x ananassa HOM05D007336 ORTHO05D009339 3.1e-31 138.7 115 60.0
Phvul.001G227200 Phaseolus vulgaris HOM05D007336 ORTHO05D009339 3.1e-31 138.7 116 56.9
arahy.Tifrunner.gnm1.ann1.N7WCQ3 Arachis hypogaea HOM05D000001 ORTHO05D010781 4.1e-31 138.3 116 59.5
CANSAT54G2288 Cannabis sativa HOM05D007336 ORTHO05D009339 4.1e-31 138.3 115 59.1
arahy.Tifrunner.gnm1.ann1.63GRQU Arachis hypogaea HOM05D007336 ORTHO05D010781 7.0e-31 137.5 116 58.6
Dinv29713 Davidia involucrata HOM05D002548 ORTHO05D003031 1.6e-30 136.3 115 61.7
FAN09G1805 Fragaria x ananassa HOM05D007336 ORTHO05D009339 1.6e-30 136.3 115 60.0
FAN14G5314 Fragaria x ananassa HOM05D007336 ORTHO05D009339 1.6e-30 136.3 115 60.0
Potri.005G021800 Populus trichocarpa HOM05D007336 ORTHO05D009339 1.6e-30 136.3 110 60.0
MSTRG.3884 Avicennia marina HOM05D007336 ORTHO05D009339 2.0e-30 136.0 123 57.7
Haze_04108 Corylus avellana HOM05D002548 ORTHO05D003031 2.0e-30 136.0 153 49.7
vmacro08103 Vaccinium macrocarpon HOM05D007336 ORTHO05D009339 2.6e-30 135.6 124 55.6
ClCG02G015210 Citrullus lanatus HOM05D007336 ORTHO05D009339 4.5e-30 134.8 116 59.5
Rhsim04G0227800 Rhododendron simsii HOM05D007336 ORTHO05D009339 5.9e-30 134.4 123 56.9
MELO3C004210.2 Cucumis melo HOM05D007336 ORTHO05D009339 7.7e-30 134.0 116 59.5
CSS0001044 Camellia sinensis var. sinensis HOM05D007336 ORTHO05D009339 1.0e-29 133.7 122 58.2
Actinidia40305 Actinidia chinensis HOM05D007336 ORTHO05D009339 1.3e-29 133.3 122 56.6
SEGI_32823 Sequoiadendron giganteum HOM05D007336 ORTHO05D009339 2.2e-29 132.5 117 55.6
CsaV3_2G006800 Cucumis sativus L. HOM05D007336 ORTHO05D009339 2.9e-29 132.1 116 58.6
FAN02G4454 Fragaria x ananassa HOM05D007336 ORTHO05D009339 2.9e-29 132.1 125 56.8
Dinv44340 Davidia involucrata HOM05D007336 ORTHO05D009339 3.8e-29 131.7 115 60.9
SalBow2G0618 Salvia bowleyana HOM05D007336 ORTHO05D009339 5.0e-29 131.3 123 54.5
CDE02G0601 Ceratophyllum demersum HOM05D007336 ORTHO05D009339 1.5e-28 129.8 113 57.5
Cc03_g01420 Coffea canephora HOM05D007336 ORTHO05D009339 1.9e-28 129.4 115 57.4
SGA_v2.0_scaffold104G30104 Striga asiatica HOM05D007336 ORTHO05D009339 5.5e-28 127.9 116 56.0
AUR62015269 Chenopodium quinoa HOM05D007336 ORTHO05D009339 9.4e-28 127.1 122 53.3
Nitab4.5_0000306g0320 Nicotiana tabacum HOM05D007336 ORTHO05D009339 1.2e-27 126.7 110 57.3
HPP92_013733 Vanilla planifolia HOM05D007336 ORTHO05D009339 1.6e-27 126.3 115 54.8
Sc19g0005520 Simmondsia chinensis HOM05D007336 ORTHO05D009339 2.1e-27 125.9 116 56.0
AUR62018066 Chenopodium quinoa HOM05D007336 ORTHO05D009339 2.7e-27 125.6 115 54.8
Hund20531 Selenicereus undatus HOM05D007336 ORTHO05D009339 4.7e-27 124.8 115 55.7
Gohir.A11G270600 Gossypium hirsutum HOM05D007336 ORTHO05D009339 6.1e-27 124.4 99 64.6
Lsat_1_v5_gn_6_76001 Lactuca sativa HOM05D007336 ORTHO05D009339 1.0e-26 123.6 115 55.7
CAN.G14.12 Capsicum annuum HOM05D007336 ORTHO05D009339 1.4e-26 123.2 110 56.4
PGSC0003DMG400006241 Solanum tuberosum HOM05D007336 ORTHO05D009339 1.8e-26 122.9 110 57.3
TPR.G39916 Trifolium pratense HOM05D007336 ORTHO05D009339 1.8e-26 122.9 122 49.2
EL10Ac3g06656 Beta vulgaris HOM05D007336 ORTHO05D009339 2.3e-26 122.5 115 53.9
DCAR_030493 Daucus carota HOM05D007336 ORTHO05D009339 3.0e-26 122.1 115 54.8
Zm00001eb300400 Zea mays HOM05D007336 ORTHO05D009339 3.0e-26 122.1 114 54.4
Medtr7g112530 Medicago truncatula HOM05D007336 ORTHO05D009339 8.8e-26 120.6 115 51.3
Cpa.g.sc48.123 Carica papaya HOM05D007336 ORTHO05D009339 1.7e-24 116.3 197 37.1
Peaxi162Scf00065g01021 Petunia axillaris HOM05D007336 ORTHO05D009339 2.2e-24 115.9 110 55.5
PSO832G0037 Papaver somniferum HOM05D007336 ORTHO05D009339 2.8e-24 115.5 111 50.5
Nitab4.5_0002755g0010 Nicotiana tabacum HOM05D007336 ORTHO05D009339 6.3e-24 114.4 127 48.8
unitig_46.g18696 Utricularia gibba HOM05D007336 ORTHO05D009339 6.3e-24 114.4 111 53.2
AagrBONN_evm.TU.Sc2ySwM_344.3688 Anthoceros agrestis HOM05D007336 ORTHO05D009339 1.4e-23 113.2 112 49.1
MBI18_g25083_MAGBIO Magnolia biondii HOM05D007336 ORTHO05D009339 1.4e-23 113.2 143 46.9
Nn4g25729 Nelumbo nucifera HOM05D007336 ORTHO05D009339 1.8e-23 112.8 88 61.4
Solyc01g065710.3 Solanum lycopersicum HOM05D007336 ORTHO05D009339 1.8e-23 112.8 110 52.7
Sopen01g027110 Solanum pennellii HOM05D007336 ORTHO05D009339 1.8e-23 112.8 110 52.7
QL03p019121 Quercus lobata HOM05D007336 ORTHO05D009339 4.1e-23 111.7 80 66.2
Prupe.2G221300 Prunus persica HOM05D007336 ORTHO05D009339 1.2e-22 110.2 80 67.5
VMungo1383G0834 Vigna mungo HOM05D007336 ORTHO05D009339 1.5e-20 103.2 80 61.2
ATR0693G059 Amborella trichopoda HOM05D007336 ORTHO05D009339 1.9e-20 102.8 82 59.8
Eucgr.H03263 Eucalyptus grandis HOM05D007336 ORTHO05D009339 2.5e-20 102.4 80 60.0
Prupe.3G209800 Prunus persica HOM05D007336 ORTHO05D009339 2.5e-20 102.4 103 51.5
Sed0016582 Sechium edule HOM05D007336 ORTHO05D009339 9.4e-20 100.5 77 63.6
Glyma.03G233600 Glycine max HOM05D007336 ORTHO05D009339 1.2e-19 100.1 82 57.3
Eucgr.H03265 Eucalyptus grandis HOM05D007336 ORTHO05D009339 1.6e-19 99.8 80 58.8
Eucgr.L02901 Eucalyptus grandis HOM05D007336 ORTHO05D009339 1.6e-19 99.8 80 58.8
Pp3c22_13440 Physcomitrium patens HOM05D007336 ORTHO05D009339 6.1e-19 97.8 115 41.7
HanXRQChr13g0413951 Helianthus annuus HOM05D007336 ORTHO05D009339 1.0e-18 97.1 80 60.0
Ah.04g153680 Amaranthus hybridus HOM05D007336 ORTHO05D009339 8.8e-18 94.0 87 55.2
Oeu031988.1 Olea europaea HOM05D007336 ORTHO05D009339 7.5e-17 90.9 86 52.3
SMO137G0008 Selaginella moellendorffii HOM05D007336 ORTHO05D009339 2.4e-15 85.9 108 43.5
Mapoly0064s0018 Marchantia polymorpha HOM05D007336 ORTHO05D009339 3.8e-13 78.6 80 48.8


User provided reference genes

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