Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 8.2e-97 357.1 182 100.0
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 1.1e-77 293.5 155 98.7
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 1.1e-77 293.5 155 98.7
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 1.3e-54 216.9 108 98.1
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 1.3e-54 216.9 108 98.1
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 3.0e-54 215.7 108 98.1
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 1.9e-53 213.0 106 99.1
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 8.0e-52 207.6 112 91.1
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 8.0e-52 207.6 112 91.1
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 1.0e-51 207.2 112 92.0
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 2.3e-51 206.1 121 85.1
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 1.9e-48 196.4 108 92.6
BolC1t03555H Brassica oleracea HOM05D005574 ORTHO05D007102 1.4e-40 170.2 95 97.9
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 3.5e-39 165.6 159 60.4
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 3.9e-38 162.2 159 59.1
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 1.5e-37 160.2 79 100.0
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 1.9e-37 159.8 158 58.9
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 1.9e-37 159.8 158 58.9
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 1.9e-37 159.8 158 58.9
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 9.9e-34 147.5 161 56.5
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 2.9e-33 146.0 69 100.0
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 2.9e-33 146.0 133 59.4
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 1.9e-32 143.3 134 59.7
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 2.4e-32 142.9 137 58.4
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 2.7e-31 139.4 129 59.7
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 7.8e-31 137.9 166 48.8
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 1.9e-29 133.3 100 71.0
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 2.5e-29 132.9 166 47.0
C09p41690 Brassica napus HOM05D005574 ORTHO05D022054 2.1e-28 129.8 63 100.0
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 2.0e-26 123.2 158 50.6
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 1.2e-23 114.0 155 42.6
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 1.3e-22 110.5 156 41.7
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 2.3e-22 109.8 157 41.4
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 3.0e-22 109.4 167 41.9
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 1.1e-21 107.5 149 40.9
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 1.5e-21 107.1 52 96.2
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 2.5e-21 106.3 146 43.2
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 4.3e-21 105.5 146 46.6
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 7.3e-21 104.8 141 41.1
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 9.6e-21 104.4 141 41.1
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 1.3e-20 104.0 130 40.8
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.6e-20 103.6 146 43.2
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 2.1e-20 103.2 132 42.4
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 2.8e-20 102.8 166 36.7
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 3.6e-20 102.4 146 43.8
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 3.6e-20 102.4 145 40.0
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 4.8e-20 102.1 143 42.0
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 6.2e-20 101.7 132 41.7
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 6.2e-20 101.7 141 40.4
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 8.1e-20 101.3 131 45.0
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 1.1e-19 100.9 137 41.6
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 1.1e-19 100.9 120 40.8
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 1.4e-19 100.5 123 43.9
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 1.4e-19 100.5 152 42.1
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.8e-19 100.1 123 43.9
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 4.0e-19 99.0 132 41.7
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 4.0e-19 99.0 139 40.3
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 5.3e-19 98.6 123 43.1
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 5.3e-19 98.6 151 39.7
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 6.9e-19 98.2 158 41.1
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 9.0e-19 97.8 146 41.8
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 9.0e-19 97.8 132 42.4
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 1.2e-18 97.4 146 41.8
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 1.5e-18 97.1 127 44.9
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 2.0e-18 96.7 144 39.6
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 4.5e-18 95.5 127 44.1
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 4.5e-18 95.5 127 44.1
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 4.5e-18 95.5 127 44.1
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 5.8e-18 95.1 127 43.3
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 5.8e-18 95.1 127 42.5
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 7.6e-18 94.7 145 39.3
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 9.9e-18 94.4 120 43.3
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.3e-17 94.0 106 46.2
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.3e-17 94.0 127 42.5
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 1.7e-17 93.6 132 40.2
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 2.2e-17 93.2 129 41.9
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 4.9e-17 92.0 145 39.3
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 4.9e-17 92.0 126 45.2
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 4.9e-17 92.0 146 38.4
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 4.9e-17 92.0 175 36.6
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 4.9e-17 92.0 120 40.0
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 4.9e-17 92.0 146 37.7
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 4.9e-17 92.0 141 40.4
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 6.4e-17 91.7 149 43.6
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 6.4e-17 91.7 114 39.5
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 1.1e-16 90.9 43 100.0
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 1.1e-16 90.9 148 39.9
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 2.4e-16 89.7 147 38.1
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 2.4e-16 89.7 145 34.5
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 5.4e-16 88.6 129 38.8
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 5.4e-16 88.6 142 35.9
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 7.1e-16 88.2 154 37.0
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 9.3e-16 87.8 113 42.5
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 1.2e-15 87.4 106 44.3
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 1.2e-15 87.4 118 38.1
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 1.2e-15 87.4 145 37.9
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 1.6e-15 87.0 145 33.1
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 3.5e-15 85.9 145 34.5
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 6.0e-15 85.1 146 32.9
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 1.0e-14 84.3 156 35.3
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 1.0e-14 84.3 166 39.8
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 1.3e-14 84.0 146 34.9
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 1.8e-14 83.6 154 38.3
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 2.3e-14 83.2 165 33.3
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 3.0e-14 82.8 143 34.3
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 3.9e-14 82.4 145 34.5
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 3.9e-14 82.4 155 36.1
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 3.9e-14 82.4 107 40.2
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 3.9e-14 82.4 150 35.3
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 5.1e-14 82.0 123 40.7
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 6.7e-14 81.6 116 41.4
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 8.7e-14 81.3 59 66.1
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 8.7e-14 81.3 129 35.7
BolC8t52700H Brassica oleracea HOM05D052429 ORTHO05D043069 1.9e-13 80.1 68 58.8
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 2.5e-13 79.7 123 39.0
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 4.3e-13 79.0 156 35.3
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 7.4e-13 78.2 128 36.7
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 3.6e-12 75.9 59 59.3
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 8.1e-12 74.7 147 38.8
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 1.4e-11 73.9 157 29.9
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 3.1e-11 72.8 149 33.6
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 4.0e-11 72.4 123 31.7
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.2e-09 66.6 153 30.1
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 3.8e-09 65.9 152 31.6
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 4.9e-09 65.5 111 43.2
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 1.1e-08 64.3 145 29.0
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 9.3e-08 61.2 122 32.8
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 1.3e-06 57.4 31 80.6


User provided reference genes

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