Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 3.5e-222 774.6 383 100.0
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 2.6e-201 705.3 383 93.2
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 3.7e-200 701.4 383 92.7
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 7.3e-196 687.2 378 92.1
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 9.5e-196 686.8 374 93.0
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 2.8e-195 685.3 385 91.2
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 1.8e-194 682.6 385 90.6
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 2.4e-191 672.2 383 89.3
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 7.1e-191 670.6 383 88.5
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 2.1e-190 669.1 383 89.0
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 6.0e-182 641.0 383 84.3
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 3.6e-171 605.1 383 83.0
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 7.6e-161 570.9 384 76.0
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 2.9e-160 568.9 399 75.4
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 4.2e-143 511.9 384 66.4
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 2.1e-142 509.6 385 67.0
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 3.9e-141 505.4 386 65.5
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.1e-141 505.0 387 67.2
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 5.1e-141 505.0 387 67.2
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 6.7e-141 504.6 386 66.8
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 8.7e-141 504.2 388 67.3
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 2.5e-140 502.7 401 66.3
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 4.3e-140 501.9 387 66.9
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 5.7e-140 501.5 387 66.9
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 2.2e-139 499.6 401 66.3
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.7e-139 498.8 388 66.8
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 3.7e-139 498.8 385 66.2
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 6.3e-139 498.0 379 65.4
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 2.4e-138 496.1 385 66.8
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 4.1e-138 495.4 385 68.6
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 4.1e-138 495.4 384 65.4
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 5.3e-138 495.0 384 67.4
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 5.3e-138 495.0 387 66.4
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 6.9e-138 494.6 386 66.3
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 2.6e-137 492.7 386 64.2
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 2.6e-137 492.7 386 64.8
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 4.5e-137 491.9 385 65.7
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.0e-136 490.7 386 66.8
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.3e-136 490.3 386 66.6
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 1.3e-136 490.3 387 65.6
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 5.0e-136 488.4 382 65.7
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 8.5e-136 487.6 383 63.7
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 8.5e-136 487.6 384 66.7
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 1.1e-135 487.3 382 65.4
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 1.9e-135 486.5 382 65.7
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 2.5e-135 486.1 387 64.9
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 2.5e-135 486.1 389 64.0
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 5.5e-135 485.0 385 65.7
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 2.1e-134 483.0 387 63.3
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 2.7e-134 482.6 385 65.7
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 6.1e-134 481.5 384 64.3
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 6.1e-134 481.5 387 63.6
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 7.9e-134 481.1 387 63.6
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 2.3e-133 479.6 385 65.2
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.3e-133 479.6 388 64.4
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 3.0e-133 479.2 385 64.2
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 1.5e-132 476.9 387 65.4
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 3.3e-132 475.7 388 63.9
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 7.4e-132 474.6 379 63.9
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 1.3e-131 473.8 378 64.8
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 1.3e-131 473.8 412 61.7
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.1e-130 470.7 386 63.0
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 6.9e-130 468.0 385 63.1
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 1.2e-129 467.2 383 62.7
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.2e-129 467.2 402 61.7
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 1.2e-129 467.2 382 61.3
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 3.4e-129 465.7 391 64.2
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 4.5e-129 465.3 390 63.3
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 5.9e-129 464.9 401 62.6
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 5.9e-129 464.9 383 62.4
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 2.9e-128 462.6 413 60.0
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 1.4e-127 460.3 381 61.4
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.4e-127 460.3 387 63.0
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 1.9e-127 459.9 384 60.7
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 1.9e-127 459.9 432 56.9
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.7e-126 456.1 385 62.6
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 4.7e-126 455.3 386 61.7
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 6.1e-126 454.9 384 63.8
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.9e-126 454.5 364 65.9
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.0e-125 454.1 413 58.4
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 1.0e-125 454.1 383 61.6
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 1.8e-125 453.4 385 60.8
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 6.7e-125 451.4 394 60.2
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 9.7e-124 447.6 385 60.5
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 1.1e-122 444.1 387 61.0
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 2.4e-122 443.0 379 59.9
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 7.7e-121 438.0 378 61.4
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 1.5e-119 433.7 378 60.6
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 1.2e-118 430.6 378 60.8
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 1.8e-117 426.8 387 59.2
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 2.2e-115 419.9 383 58.0
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.2e-113 414.1 417 54.7
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 4.2e-111 405.6 404 55.7
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 4.2e-111 405.6 388 55.7
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 7.2e-111 404.8 388 55.7
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 2.7e-110 402.9 387 57.9
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 2.7e-110 402.9 388 54.4
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 2.3e-109 399.8 382 55.8
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 3.7e-107 392.5 312 65.7
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 1.1e-106 391.0 385 54.3
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 9.4e-103 377.9 388 52.3
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 1.8e-101 373.6 255 71.0
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 2.3e-101 373.2 429 50.8
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 4.4e-100 369.0 374 52.9
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 1.1e-98 364.4 383 53.3
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 6.8e-93 345.1 393 49.6
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 1.5e-92 344.0 387 51.7
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 1.7e-91 340.5 293 61.8
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 3.7e-91 339.3 380 51.3
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 1.2e-84 317.8 385 46.5
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 5.8e-84 315.5 419 46.8
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 3.2e-82 309.7 280 57.1
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 1.7e-80 303.9 377 46.2
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 1.1e-77 294.7 384 45.6
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 2.1e-73 280.4 411 40.9
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 1.7e-67 260.8 236 55.1
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 6.6e-64 248.8 242 53.7
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 1.6e-54 217.6 349 42.7
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 3.1e-53 213.4 364 41.2
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 3.2e-50 203.4 230 47.4
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 7.4e-47 192.2 161 64.0
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 1.2e-44 184.9 139 63.3
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 6.7e-32 142.5 113 65.5
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.9e-31 141.0 113 64.6
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.6e-31 138.7 113 64.6
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.4e-29 134.0 113 62.8
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 2.5e-26 124.0 117 62.4
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 1.3e-22 111.7 118 47.5
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 3.7e-22 110.2 67 80.6
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 2.4e-21 107.5 83 59.0
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 6.9e-21 105.9 99 61.6
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 1.2e-17 95.1 79 59.5
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 6.1e-17 92.8 64 73.4
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 1.8e-16 91.3 112 48.2
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 1.0e-11 75.5 333 24.6
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 6.5e-11 72.8 85 43.5
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 7.9e-09 65.9 58 60.3
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.4e-08 65.1 49 63.3
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 5.2e-08 63.2 44 65.9
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 6.7e-08 62.8 65 50.8
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 5.7e-07 59.7 69 43.5


User provided reference genes

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