Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49455 Brassica carinata HOM05D006923 ORTHO05D008697 6.4e-174 614.0 315 100.0
BolC1t03615H Brassica oleracea HOM05D006923 ORTHO05D008697 4.1e-160 568.2 316 94.0
C01p36540 Brassica napus HOM05D006923 ORTHO05D008697 2.9e-158 562.0 336 88.7
BraA01t03022Z Brassica rapa HOM05D006923 ORTHO05D008697 5.7e-138 494.6 280 92.5
A01p28870 Brassica napus HOM05D006923 ORTHO05D008697 7.4e-138 494.2 277 93.5
BcaC06g31796 Brassica carinata HOM05D006923 ORTHO05D008697 6.3e-137 491.1 274 92.3
Thhalv10023990m.g Eutrema salsugineum HOM05D006923 ORTHO05D008697 3.1e-136 488.8 301 84.7
Sp2g04730 Schrenkiella parvula HOM05D006923 ORTHO05D008697 7.0e-136 487.6 311 81.0
AL2G16930 Arabidopsis lyrata HOM05D006923 ORTHO05D008697 2.2e-134 482.6 311 81.4
AT1G59840 Arabidopsis thaliana HOM05D006923 ORTHO05D008697 6.5e-134 481.1 312 79.8
BcaB04g20234 Brassica carinata HOM05D006923 ORTHO05D008697 3.0e-131 472.2 312 81.1
Carub.0002s0542 Capsella rubella HOM05D006923 ORTHO05D008697 7.0e-128 461.1 314 78.7
Aa31LG2G10350 Aethionema arabicum HOM05D006923 ORTHO05D008697 2.0e-127 459.5 310 78.4
BcaNung06340 Brassica carinata HOM05D006923 ORTHO05D008697 7.5e-122 441.0 274 84.7
Aa31LG1G14870 Aethionema arabicum HOM05D006923 ORTHO05D008697 9.1e-120 434.1 318 74.5
THA.LOC104819679 Tarenaya hassleriana HOM05D006923 ORTHO05D008697 2.9e-118 429.1 297 75.4
Ciclev10032274m.g Citrus clementina HOM05D006923 ORTHO05D008697 2.7e-103 379.4 289 68.9
COL.COLO4_36266 Corchorus olitorius HOM05D006923 ORTHO05D008697 1.9e-101 373.2 313 63.6
Gohir.A05G320000 Gossypium hirsutum HOM05D006923 ORTHO05D008697 1.2e-100 370.5 311 64.3
Sed0028145 Sechium edule HOM05D006923 ORTHO05D008697 2.8e-100 369.4 301 65.8
Atru.chr11.1922 Acer truncatum HOM05D006923 ORTHO05D008697 3.6e-100 369.0 301 65.1
Cpa.g.sc5.315 Carica papaya HOM05D006923 ORTHO05D008697 4.7e-100 368.6 296 67.2
Gorai.009G345900 Gossypium raimondii HOM05D006923 ORTHO05D008697 1.2e-98 364.0 311 63.7
MD13G1084200 Malus domestica HOM05D006923 ORTHO05D008697 1.2e-98 364.0 302 66.2
Manes.05G093700 Manihot esculenta HOM05D006923 ORTHO05D008697 1.5e-98 363.6 300 65.7
Gohir.D05G322300 Gossypium hirsutum HOM05D006923 ORTHO05D008697 3.4e-98 362.5 311 63.7
PGR102G0681 Punica granatum HOM05D006923 ORTHO05D008697 7.5e-98 361.3 303 65.3
ClCG05G024880 Citrullus lanatus HOM05D006923 ORTHO05D008697 1.7e-97 360.1 301 64.5
GSVIVG01020133001 Vitis vinifera HOM05D006923 ORTHO05D008697 5.4e-96 355.1 301 62.8
FAN07G0582 Fragaria x ananassa HOM05D006923 ORTHO05D008697 2.0e-95 353.2 301 63.5
FAN22G1061 Fragaria x ananassa HOM05D006923 ORTHO05D008697 4.6e-95 352.1 301 63.5
Hund25304 Selenicereus undatus HOM05D006923 ORTHO05D008697 5.0e-94 348.6 325 58.8
Thecc.02G238100 Theobroma cacao HOM05D006923 ORTHO05D008697 1.5e-93 347.1 299 61.2
EL10Ac6g13089 Beta vulgaris HOM05D006923 ORTHO05D008697 1.9e-93 346.7 318 57.5
FvH4_4g35320 Fragaria vesca HOM05D006923 ORTHO05D008697 2.5e-93 346.3 301 62.5
QL03p067501 Quercus lobata HOM05D006923 ORTHO05D008697 2.5e-93 346.3 309 62.8
RcHm_v2.0_Chr4g0444951 Rosa chinensis HOM05D006923 ORTHO05D008697 2.5e-93 346.3 301 63.8
AUR62039449 Chenopodium quinoa HOM05D006923 ORTHO05D008697 3.3e-93 345.9 303 61.1
Dinv31139 Davidia involucrata HOM05D006923 ORTHO05D008697 4.3e-93 345.5 305 62.3
FAN12G2795 Fragaria x ananassa HOM05D006923 ORTHO05D008697 5.6e-93 345.1 303 62.0
CsaV3_5G032010 Cucumis sativus L. HOM05D006923 ORTHO05D008697 7.3e-93 344.7 273 68.5
CiPaw.06G077400 Carya illinoinensis HOM05D006923 ORTHO05D008697 2.1e-92 343.2 291 63.2
MSTRG.649 Avicennia marina HOM05D006923 ORTHO05D008697 2.8e-92 342.8 308 59.1
Cc11_g13930 Coffea canephora HOM05D006923 ORTHO05D008697 3.6e-92 342.4 292 63.0
TAR629G1985 Trochodendron aralioides HOM05D006923 ORTHO05D008697 3.6e-92 342.4 301 61.5
Nn4g22963 Nelumbo nucifera HOM05D006923 ORTHO05D008697 4.7e-92 342.0 275 65.8
Actinidia24653 Actinidia chinensis HOM05D006923 ORTHO05D008697 5.2e-91 338.6 316 61.1
CSS0003222 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 8.9e-91 337.8 304 63.5
TPR.G26715 Trifolium pratense HOM05D006923 ORTHO05D008697 1.2e-90 337.4 268 66.8
CAN.G25.5 Capsicum annuum HOM05D006923 ORTHO05D008697 2.0e-90 336.7 304 59.9
PGSC0003DMG400001928 Solanum tuberosum HOM05D006923 ORTHO05D008697 4.4e-90 335.5 288 63.9
Phvul.002G078400 Phaseolus vulgaris HOM05D006923 ORTHO05D008697 5.8e-90 335.1 278 65.5
Prupe.1G262600 Prunus persica HOM05D006923 ORTHO05D008697 5.8e-90 335.1 259 68.7
Sopen04g001110 Solanum pennellii HOM05D006923 ORTHO05D008697 5.8e-90 335.1 287 63.1
Migut.L01372 Erythranthe guttata HOM05D006923 ORTHO05D008697 7.5e-90 334.7 301 60.5
Peaxi162Scf00266g00035 Petunia axillaris HOM05D006923 ORTHO05D008697 9.9e-90 334.3 258 67.4
HanXRQChr09g0267151 Helianthus annuus HOM05D006923 ORTHO05D008697 1.7e-89 333.6 258 65.1
CANSAT01G2170 Cannabis sativa HOM05D006923 ORTHO05D008697 3.7e-89 332.4 307 61.2
PSO591G0274 Papaver somniferum HOM05D006923 ORTHO05D008697 4.9e-89 332.0 315 57.5
Lj2g0018338 Lotus japonicus HOM05D006923 ORTHO05D008697 8.3e-89 331.3 266 66.2
arahy.Tifrunner.gnm1.ann1.NUE0XS Arachis hypogaea HOM05D006923 ORTHO05D008697 1.4e-88 330.5 251 68.9
arahy.Tifrunner.gnm1.ann1.EW3DBQ Arachis hypogaea HOM05D006923 ORTHO05D008697 2.4e-88 329.7 283 63.3
Cfa009080 Carpinus fangiana HOM05D006923 ORTHO05D008697 2.4e-88 329.7 257 66.9
Ca_05074_v3 Cicer arietinum L. HOM05D006923 ORTHO05D008697 2.4e-88 329.7 258 66.7
CARHR053250 Cardamine hirsuta HOM05D006923 ORTHO05D008697 3.2e-88 329.3 210 80.5
Solyc04g005090.4 Solanum lycopersicum HOM05D006923 ORTHO05D008697 3.2e-88 329.3 285 62.5
Psat2g114680 Pisum sativum HOM05D006923 ORTHO05D008697 7.1e-88 328.2 301 60.8
Rhsim12G0127000 Rhododendron simsii HOM05D006923 ORTHO05D008697 7.1e-88 328.2 265 64.5
Glyma.02G026400 Glycine max HOM05D006923 ORTHO05D008697 9.2e-88 327.8 291 61.2
Aqoxy3G03167 Aquilegia oxysepala HOM05D006923 ORTHO05D008697 1.2e-87 327.4 289 61.6
SGA_v2.0_scaffold166G38306 Striga asiatica HOM05D006923 ORTHO05D008697 1.6e-87 327.0 290 60.3
Lj6C798T8 Lonicera japonica HOM05D006923 ORTHO05D008697 2.1e-87 326.6 312 58.7
Potri.008G191900 Populus trichocarpa HOM05D006923 ORTHO05D008697 1.7e-86 323.6 301 59.5
Lalb_Chr16g0382621 Lupinus albus HOM05D006923 ORTHO05D008697 3.9e-86 322.4 269 62.5
CDE04G0355 Ceratophyllum demersum HOM05D006923 ORTHO05D008697 1.1e-85 320.9 291 59.1
CSS0013336 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 2.5e-85 319.7 248 69.0
SalBow2G1484 Salvia bowleyana HOM05D006923 ORTHO05D008697 4.3e-85 318.9 305 57.4
SalBow2G2758 Salvia bowleyana HOM05D006923 ORTHO05D008697 4.3e-85 318.9 305 57.4
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 3.1e-83 312.8 251 63.7
Nitab4.5_0005168g0020 Nicotiana tabacum HOM05D006923 ORTHO05D008697 4.0e-83 312.4 301 59.1
unitig_26.g10329 Utricularia gibba HOM05D006923 ORTHO05D008697 3.4e-82 309.3 301 56.8
vmacro16302 Vaccinium macrocarpon HOM05D006923 ORTHO05D008697 5.8e-82 308.5 280 60.0
Sc11g0001490 Simmondsia chinensis HOM05D006923 ORTHO05D008697 8.4e-81 304.7 269 61.7
Os04g0650500 Oryza sativa ssp. japonica HOM05D006923 ORTHO05D008697 7.1e-80 301.6 277 58.1
Sabra08G0145400 Salix brachista HOM05D006923 ORTHO05D008697 7.1e-80 301.6 220 70.0
Zm00001eb068300 Zea mays HOM05D006923 ORTHO05D008697 4.6e-79 298.9 246 63.0
HPP92_026426 Vanilla planifolia HOM05D006923 ORTHO05D008697 2.3e-78 296.6 275 57.5
Lsat_1_v5_gn_7_91800 Lactuca sativa HOM05D006923 ORTHO05D008697 6.6e-78 295.0 213 68.1
MELO3C012038.2 Cucumis melo HOM05D006923 ORTHO05D008697 3.6e-76 289.3 247 65.2
ATR0624G013 Amborella trichopoda HOM05D006923 ORTHO05D008697 2.4e-75 286.6 255 60.0
TWI18G0575 Tripterygium wilfordii HOM05D006923 ORTHO05D008697 6.9e-75 285.0 291 54.0
AUR62026532 Chenopodium quinoa HOM05D006923 ORTHO05D008697 4.9e-73 278.9 274 56.2
Medtr5g037050 Medicago truncatula HOM05D006923 ORTHO05D008697 5.4e-72 275.4 243 62.6
VMungo1215G1603 Vigna mungo HOM05D006923 ORTHO05D008697 2.1e-71 273.5 218 66.5
Haze_12112 Corylus avellana HOM05D006923 ORTHO05D008697 2.2e-65 253.4 204 63.7
Duzib268G0289 Durio zibethinus HOM05D006923 ORTHO05D008697 4.6e-63 245.7 313 49.2
Pp3c3_23340 Physcomitrium patens HOM05D006923 ORTHO05D008697 2.4e-59 233.4 243 52.7
Mapoly0001s0231 Marchantia polymorpha HOM05D006923 ORTHO05D008697 3.1e-59 233.0 241 49.8
FAN17G2763 Fragaria x ananassa HOM05D006923 ORTHO05D008697 6.7e-54 215.3 301 46.2
CBR_g3926 Chara braunii HOM05D006923 ORTHO05D008697 3.8e-49 199.5 243 42.4
Cre08.g382300 Chlamydomonas reinhardtii HOM05D006923 ORTHO05D008697 1.0e-41 174.9 244 41.0
MBI17_g35870_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 1.0e-38 164.9 148 61.5
MCO16G195 Micromonas commoda HOM05D006923 ORTHO05D008697 2.3e-38 163.7 256 39.8
Nitab4.5_0001908g0040 Nicotiana tabacum HOM05D006923 ORTHO05D008697 4.1e-35 152.9 245 41.6
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.6e-31 141.0 295 32.5
Sed0022420 Sechium edule HOM05D006923 ORTHO05D008697 1.1e-27 128.3 241 38.6
PSO832G3782 Papaver somniferum HOM05D006923 ORTHO05D008697 1.0e-25 121.7 106 60.4
AagrBONN_evm.TU.Sc2ySwM_117.4092 Anthoceros agrestis HOM05D006923 ORTHO05D008697 9.1e-19 98.6 100 53.0
SEGI_22816 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 2.9e-17 93.6 84 54.8
MBI17_g35869_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 2.5e-16 90.5 100 49.0
A07p27760 Brassica napus HOM05D006923 ORTHO05D024228 1.3e-09 68.2 70 57.1
BraA07t30415Z Brassica rapa HOM05D006923 ORTHO05D024228 1.3e-09 68.2 70 57.1
Hma1.2p1_0289F.1_g114510 Hydrangea macrophylla HOM05D006923 ORTHO05D008697 1.7e-09 67.8 58 58.6
BraA08t33759Z Brassica rapa HOM05D020796 ORTHO05D024228 3.8e-09 66.6 70 55.7
CiPaw.05G144000 Carya illinoinensis HOM05D006923 ORTHO05D008697 8.5e-09 65.5 103 42.7
VMungo1215G3051 Vigna mungo HOM05D006923 ORTHO05D008697 1.5e-08 64.7 59 55.9
SEGI_22360 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 7.2e-08 62.4 53 50.9
SEGI_10943 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 3.6e-07 60.1 60 50.0
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.0e-06 58.5 49 61.2
C03p46150 Brassica napus HOM05D024156 ORTHO05D027668 1.8e-06 57.8 57 57.9
CDE06G0154 Ceratophyllum demersum HOM05D006923 ORTHO05D130285 1.8e-06 57.8 40 75.0


User provided reference genes

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