Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49390 Brassica carinata HOM05D006342 ORTHO05D008155 6.9e-207 723.8 377 100.0
BolC1t03681H Brassica oleracea HOM05D006342 ORTHO05D008155 1.6e-203 712.6 381 98.4
C01p37160 Brassica napus HOM05D006342 ORTHO05D008155 2.0e-190 669.1 376 93.6
BcaB04g20275 Brassica carinata HOM05D006342 ORTHO05D008155 3.6e-179 631.7 382 88.2
BraA01t03071Z Brassica rapa HOM05D006342 ORTHO05D008155 1.5e-177 626.3 385 87.5
A01p29370 Brassica napus HOM05D006342 ORTHO05D008155 1.2e-169 600.1 381 85.3
Thhalv10023528m.g Eutrema salsugineum HOM05D006342 ORTHO05D008155 1.5e-169 599.7 381 84.3
Carub.0002s0473 Capsella rubella HOM05D006342 ORTHO05D008155 5.7e-169 597.8 378 84.7
AL2G16000 Arabidopsis lyrata HOM05D006342 ORTHO05D008155 2.2e-165 585.9 386 81.9
AT1G60600 Arabidopsis thaliana HOM05D006342 ORTHO05D008155 6.5e-165 584.3 386 81.9
Aa31LG2G9860 Aethionema arabicum HOM05D006342 ORTHO05D008155 3.3e-140 502.3 376 72.6
Nn5g30026 Nelumbo nucifera HOM05D006342 ORTHO05D008155 2.5e-116 422.9 317 70.3
Manes.07G034700 Manihot esculenta HOM05D006342 ORTHO05D008155 2.8e-115 419.5 315 69.2
Potri.017G050900 Populus trichocarpa HOM05D006342 ORTHO05D008155 8.1e-115 417.9 317 69.4
Sabra17G0037300 Salix brachista HOM05D006342 ORTHO05D008155 8.1e-115 417.9 316 69.3
Ciclev10028615m.g Citrus clementina HOM05D006342 ORTHO05D008155 2.6e-113 412.9 305 69.2
Lj4g0023834 Lotus japonicus HOM05D006342 ORTHO05D008155 7.6e-113 411.4 323 65.3
Thecc.02G134500 Theobroma cacao HOM05D006342 ORTHO05D008155 7.6e-113 411.4 306 69.3
CAN.G523.45 Capsicum annuum HOM05D006342 ORTHO05D008155 9.9e-113 411.0 329 66.3
GSVIVG01015772001 Vitis vinifera HOM05D006342 ORTHO05D008155 9.9e-113 411.0 318 69.8
Peaxi162Scf01060g00128 Petunia axillaris HOM05D006342 ORTHO05D008155 1.3e-112 410.6 318 68.9
QL11p022820 Quercus lobata HOM05D006342 ORTHO05D008155 1.7e-112 410.2 315 67.9
Prupe.8G064500 Prunus persica HOM05D006342 ORTHO05D008155 2.2e-112 409.8 315 67.3
RcHm_v2.0_Chr2g0143381 Rosa chinensis HOM05D006342 ORTHO05D008155 2.2e-112 409.8 306 69.6
TAR628G1271 Trochodendron aralioides HOM05D006342 ORTHO05D008155 2.2e-112 409.8 314 68.8
CSS0025541 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 2.9e-112 409.5 334 66.8
VMungo0251G1514 Vigna mungo HOM05D006342 ORTHO05D008155 2.9e-112 409.5 305 68.9
TPR.G35344 Trifolium pratense HOM05D006342 ORTHO05D008155 3.8e-112 409.1 311 66.6
Medtr4g094100 Medicago truncatula HOM05D006342 ORTHO05D008155 4.9e-112 408.7 326 65.3
Sopen01g047960 Solanum pennellii HOM05D006342 ORTHO05D008155 4.9e-112 408.7 322 68.3
Atru.chr6.1184 Acer truncatum HOM05D006342 ORTHO05D008155 8.4e-112 407.9 333 64.9
Gorai.005G222500 Gossypium raimondii HOM05D006342 ORTHO05D008155 8.4e-112 407.9 305 69.2
Lalb_Chr05g0217591 Lupinus albus HOM05D006342 ORTHO05D008155 8.4e-112 407.9 304 69.1
Nitab4.5_0000863g0140 Nicotiana tabacum HOM05D006342 ORTHO05D008155 1.9e-111 406.8 311 68.8
PGSC0003DMG400012575 Solanum tuberosum HOM05D006342 ORTHO05D008155 2.4e-111 406.4 330 66.4
TWI23G0792 Tripterygium wilfordii HOM05D006342 ORTHO05D008155 2.4e-111 406.4 389 57.1
Gohir.A03G175100 Gossypium hirsutum HOM05D006342 ORTHO05D008155 9.3e-111 404.4 305 68.9
Gohir.D02G198600 Gossypium hirsutum HOM05D006342 ORTHO05D008155 9.3e-111 404.4 305 68.9
Glyma.08G070600 Glycine max HOM05D006342 ORTHO05D008155 1.6e-110 403.7 305 69.2
RhsimUnG0187900 Rhododendron simsii HOM05D006342 ORTHO05D008155 1.6e-110 403.7 332 65.1
Rhsim11G0137800 Rhododendron simsii HOM05D006342 ORTHO05D008155 2.1e-110 403.3 332 64.5
ECA234G3624 Erigeron canadensis HOM05D006342 ORTHO05D008155 2.7e-110 402.9 311 65.6
Lsat_1_v5_gn_5_108680 Lactuca sativa HOM05D006342 ORTHO05D008155 2.7e-110 402.9 341 63.3
SpUN0430_0010 Schrenkiella parvula HOM05D006342 ORTHO05D008155 2.7e-110 402.9 230 91.3
Actinidia24004 Actinidia chinensis HOM05D006342 ORTHO05D008155 3.5e-110 402.5 332 66.6
THA.LOC104799883 Tarenaya hassleriana HOM05D006342 ORTHO05D008155 6.0e-110 401.7 359 63.5
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 1.0e-109 401.0 301 68.8
Eucgr.G00932 Eucalyptus grandis HOM05D006342 ORTHO05D008155 1.3e-109 400.6 390 55.9
PGR042G1699 Punica granatum HOM05D006342 ORTHO05D008155 1.3e-109 400.6 306 67.3
Nitab4.5_0003959g0010 Nicotiana tabacum HOM05D006342 ORTHO05D008155 2.3e-109 399.8 322 67.4
Psat7g100320 Pisum sativum HOM05D006342 ORTHO05D008155 3.0e-109 399.4 305 67.5
Glyma.13G042800 Glycine max HOM05D006342 ORTHO05D008155 3.9e-109 399.1 305 68.2
Cc02_g21250 Coffea canephora HOM05D006342 ORTHO05D008155 5.1e-109 398.7 317 65.6
Duzib052G0010 Durio zibethinus HOM05D006342 ORTHO05D008155 5.1e-109 398.7 332 63.6
Hma1.2p1_0522F.1_g171800 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 5.1e-109 398.7 321 65.4
FvH4_6g33511 Fragaria vesca HOM05D006342 ORTHO05D008155 6.6e-109 398.3 318 65.1
MELO3C018621.2 Cucumis melo HOM05D006342 ORTHO05D008155 1.1e-108 397.5 330 63.9
AUR62010160 Chenopodium quinoa HOM05D006342 ORTHO05D008155 1.5e-108 397.1 306 66.3
CsaV3_7G006740 Cucumis sativus L. HOM05D006342 ORTHO05D008155 1.5e-108 397.1 319 65.2
Dinv24174 Davidia involucrata HOM05D006342 ORTHO05D008155 1.5e-108 397.1 297 69.4
FAN02G0548 Fragaria x ananassa HOM05D006342 ORTHO05D008155 1.5e-108 397.1 306 67.0
Oeu042410.2 Olea europaea HOM05D006342 ORTHO05D008155 1.5e-108 397.1 327 63.3
AUR62013159 Chenopodium quinoa HOM05D006342 ORTHO05D008155 4.3e-108 395.6 306 66.0
HanXRQChr10g0303621 Helianthus annuus HOM05D006342 ORTHO05D008155 5.6e-108 395.2 310 65.5
CANSAT21G1086 Cannabis sativa HOM05D006342 ORTHO05D008155 1.6e-107 393.7 306 69.6
Lj9A350G66 Lonicera japonica HOM05D006342 ORTHO05D008155 1.6e-107 393.7 311 67.5
EL10Ac9g21517 Beta vulgaris HOM05D006342 ORTHO05D008155 6.2e-107 391.7 320 64.1
arahy.Tifrunner.gnm1.ann1.U7PRNJ Arachis hypogaea HOM05D006342 ORTHO05D008155 1.8e-106 390.2 311 66.2
DCAR_003711 Daucus carota HOM05D006342 ORTHO05D008155 2.4e-106 389.8 306 64.7
Sabra17G0037900 Salix brachista HOM05D006342 ORTHO05D008155 1.5e-105 387.1 316 65.8
Sabra17G0042600 Salix brachista HOM05D006342 ORTHO05D008155 1.3e-104 384.0 316 65.2
Sc15g0003050 Simmondsia chinensis HOM05D006342 ORTHO05D008155 1.3e-104 384.0 319 63.3
COL.COLO4_32304 Corchorus olitorius HOM05D006342 ORTHO05D008155 8.4e-104 381.3 295 67.1
PSO447G0017 Papaver somniferum HOM05D006342 ORTHO05D008155 1.9e-103 380.2 314 64.0
CiPaw.05G033400 Carya illinoinensis HOM05D006342 ORTHO05D008155 7.1e-103 378.3 321 61.7
SalBow5G5605 Salvia bowleyana HOM05D006342 ORTHO05D008155 9.3e-103 377.9 318 63.8
SGA_v2.0_scaffold83G26327 Striga asiatica HOM05D006342 ORTHO05D008155 9.3e-103 377.9 302 66.2
Migut.B00584 Erythranthe guttata HOM05D006342 ORTHO05D008155 1.2e-102 377.5 377 56.0
MSTRG.16600 Avicennia marina HOM05D006342 ORTHO05D008155 4.6e-102 375.6 388 53.6
MD10G1052500 Malus domestica HOM05D006342 ORTHO05D008155 1.8e-101 373.6 306 63.4
Cpa.g.sc42.26 Carica papaya HOM05D006342 ORTHO05D008155 3.0e-101 372.9 280 68.9
Solyc01g105460.4 Solanum lycopersicum HOM05D006342 ORTHO05D008155 4.3e-100 369.0 291 68.0
ClCG09G015650 Citrullus lanatus HOM05D006342 ORTHO05D008155 9.0e-98 361.3 319 60.8
arahy.Tifrunner.gnm1.ann1.XZGJ82 Arachis hypogaea HOM05D006342 ORTHO05D008155 4.5e-97 359.0 305 63.6
unitig_0.g609 Utricularia gibba HOM05D006342 ORTHO05D008190 4.5e-97 359.0 301 61.8
Os03g0190100 Oryza sativa ssp. japonica HOM05D006342 ORTHO05D008155 6.5e-96 355.1 305 62.0
Migut.B01155 Erythranthe guttata HOM05D006342 ORTHO05D008155 6.0e-94 348.6 329 55.6
Pp3c15_22700 Physcomitrium patens HOM05D006342 ORTHO05D008155 6.0e-94 348.6 386 50.8
MBI05_g05612_MAGBIO Magnolia biondii HOM05D006342 ORTHO05D008155 1.0e-93 347.8 288 64.2
MSTRG.20291 Avicennia marina HOM05D006342 ORTHO05D008155 8.7e-93 344.7 314 56.4
Zm00001eb006830 Zea mays HOM05D006342 ORTHO05D008155 4.8e-91 339.0 307 59.9
Hund06370 Selenicereus undatus HOM05D006342 ORTHO05D008155 1.0e-88 331.3 290 59.7
vmacro01839 Vaccinium macrocarpon HOM05D006342 ORTHO05D008155 1.0e-88 331.3 380 53.9
HPP92_019303 Vanilla planifolia HOM05D006342 ORTHO05D008155 1.0e-88 331.3 340 55.0
Mapoly0112s0045 Marchantia polymorpha HOM05D006342 ORTHO05D008155 9.3e-87 324.7 305 56.7
FAN09G1871 Fragaria x ananassa HOM05D006342 ORTHO05D003187 7.9e-86 321.6 306 57.2
SMO364G0259 Selaginella moellendorffii HOM05D006342 ORTHO05D008155 1.1e-82 311.2 286 57.0
Migut.B01157 Erythranthe guttata HOM05D006342 ORTHO05D008155 1.5e-81 307.4 318 52.2
PSO210G1371 Papaver somniferum HOM05D006342 ORTHO05D008155 6.5e-80 302.0 251 64.1
Phvul.002G210750 Phaseolus vulgaris HOM05D006342 ORTHO05D008155 1.9e-79 300.4 215 72.1
Oeu000253.3 Olea europaea HOM05D006342 ORTHO05D008155 2.1e-78 297.0 317 53.6
Sed0004067 Sechium edule HOM05D006342 ORTHO05D008155 6.3e-75 285.4 224 66.1
QL11p022738 Quercus lobata HOM05D006342 ORTHO05D008155 1.5e-68 264.2 231 64.1
Ah.01g010100 Amaranthus hybridus HOM05D006342 ORTHO05D008155 4.8e-67 259.2 209 62.2
Hma1.2p1_0522F.1_g171810 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 2.0e-65 253.8 194 67.0
AagrBONN_evm.TU.Sc2ySwM_228.424 Anthoceros agrestis HOM05D006342 ORTHO05D008155 3.5e-65 253.1 332 45.5
AagrBONN_evm.TU.Sc2ySwM_117.3744 Anthoceros agrestis HOM05D006342 ORTHO05D008155 8.5e-64 248.4 311 48.6
FAN14G1047 Fragaria x ananassa HOM05D000343 ORTHO05D003187 5.5e-63 245.7 306 47.1
Haze_10585 Corylus avellana HOM05D006342 ORTHO05D008155 2.1e-62 243.8 280 50.0
CBR_g45392 Chara braunii HOM05D006342 ORTHO05D008155 4.8e-59 232.6 275 48.4
PRCOL_00002739 Prasinoderma coloniale HOM05D006342 ORTHO05D008155 1.7e-56 224.2 302 45.0
SEGI_15165 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 2.4e-50 203.8 174 59.2
Cre04.g219787 Chlamydomonas reinhardtii HOM05D006342 ORTHO05D008155 6.1e-46 189.1 349 39.5
ATR0918G004 Amborella trichopoda HOM05D006342 ORTHO05D008155 2.7e-41 173.7 278 42.1
Aqoxy5G01924 Aquilegia oxysepala HOM05D006342 ORTHO05D008155 1.2e-36 158.3 126 62.7
CARHR052370 Cardamine hirsuta HOM05D006342 ORTHO05D008155 1.1e-34 151.8 91 85.7
Glyma.10G123801 Glycine max HOM05D006342 ORTHO05D008155 4.7e-30 136.3 107 66.4
Glyma.16G064700 Glycine max HOM05D006342 ORTHO05D008155 4.7e-30 136.3 107 66.4
ATR0782G112 Amborella trichopoda HOM05D006342 ORTHO05D008155 3.3e-23 113.6 93 60.2
SEGI_15059 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 1.1e-21 108.6 107 55.1
arahy.Tifrunner.gnm1.ann1.6J847D Arachis hypogaea HOM05D006342 ORTHO05D008155 7.1e-18 95.9 96 54.2
arahy.Tifrunner.gnm1.ann1.RT43SE Arachis hypogaea HOM05D006342 ORTHO05D008155 7.1e-18 95.9 96 54.2
arahy.Tifrunner.gnm1.ann1.2FS2S8 Arachis hypogaea HOM05D006342 ORTHO05D008155 9.2e-18 95.5 96 54.2
CSS0034348 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 1.1e-13 82.0 93 54.8
TAR376G0398 Trochodendron aralioides HOM05D000064 ORTHO05D001307 1.8e-13 81.3 55 65.5
arahy.Tifrunner.gnm1.ann1.P2KY5D Arachis hypogaea HOM05D006342 ORTHO05D008155 1.2e-06 58.5 79 44.3


User provided reference genes

Program Settings