Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49286 Brassica carinata HOM05D004230 ORTHO05D007976 7.9e-197 690.3 350 100.0
BcaB05g23135 Brassica carinata HOM05D004230 ORTHO05D007976 3.5e-136 488.8 334 76.3
BraA06t24715Z Brassica rapa HOM05D004230 ORTHO05D007976 1.1e-116 424.1 350 69.7
BcaC09g52278 Brassica carinata HOM05D004230 ORTHO05D007976 3.4e-115 419.1 350 68.9
BolC1t02226H Brassica oleracea HOM05D004230 ORTHO05D007976 3.4e-115 419.1 350 68.9
BolC4t28062H Brassica oleracea HOM05D004230 ORTHO05D007976 1.9e-113 413.3 350 68.9
C01p40550 Brassica napus HOM05D004230 ORTHO05D007976 4.6e-112 408.7 350 67.4
BcaC05g28343 Brassica carinata HOM05D004230 ORTHO05D007976 2.3e-108 396.4 309 66.7
BcaC08g43996 Brassica carinata HOM05D004230 ORTHO05D007976 2.0e-107 393.3 311 66.2
BcaC02g09042 Brassica carinata HOM05D004230 ORTHO05D007976 9.9e-107 391.0 302 66.9
BolC3t17847H Brassica oleracea HOM05D004230 ORTHO05D007976 2.9e-106 389.4 310 66.1
BolC2t08696H Brassica oleracea HOM05D004230 ORTHO05D007976 9.2e-105 384.4 302 66.9
BcaC03g15070 Brassica carinata HOM05D004230 ORTHO05D007976 3.5e-104 382.5 302 66.6
C01p22970 Brassica napus HOM05D004230 ORTHO05D007976 1.5e-99 367.1 200 96.0
C01p22920 Brassica napus HOM05D004230 ORTHO05D007976 5.8e-99 365.2 221 87.3
BcaC07g36911 Brassica carinata HOM05D004230 ORTHO05D007976 1.7e-98 363.6 313 61.3
C04p52580 Brassica napus HOM05D004230 ORTHO05D007976 1.5e-94 350.5 189 96.8
BcaB01g00472 Brassica carinata HOM05D004230 ORTHO05D007976 1.2e-93 347.4 301 61.8
C07p50550 Brassica napus HOM05D004230 ORTHO05D007976 2.1e-93 346.7 309 60.5
C07p48530 Brassica napus HOM05D004230 ORTHO05D007976 1.5e-86 323.9 303 58.4
BolC7t45361H Brassica oleracea HOM05D004230 ORTHO05D007976 2.5e-86 323.2 304 58.6
BcaC03g16826 Brassica carinata HOM05D004230 ORTHO05D007976 9.6e-86 321.2 374 51.3
BraA01t02220Z Brassica rapa HOM05D004230 ORTHO05D007976 2.5e-78 296.6 301 55.1
BcaB07g32504 Brassica carinata HOM05D004230 ORTHO05D007976 2.1e-77 293.5 381 45.9
C05p44100 Brassica napus HOM05D004230 ORTHO05D007976 8.4e-74 281.6 309 52.4
C01p36620 Brassica napus HOM05D004230 ORTHO05D007976 1.1e-73 281.2 268 57.8
C06p14020 Brassica napus HOM05D004230 ORTHO05D007976 1.4e-73 280.8 310 52.6
BcaC05g25838 Brassica carinata HOM05D004230 ORTHO05D007976 1.6e-69 267.3 268 54.9
A06p45730 Brassica napus HOM05D004230 ORTHO05D007976 3.1e-68 263.1 323 48.0
BcaB05g22709 Brassica carinata HOM05D004230 ORTHO05D007976 3.4e-67 259.6 319 48.6
BraA03t13046Z Brassica rapa HOM05D004230 ORTHO05D007976 4.5e-67 259.2 300 49.0
Carub.0007s3043 Capsella rubella HOM05D004230 ORTHO05D007976 1.3e-66 257.7 224 62.9
C08p29240 Brassica napus HOM05D004230 ORTHO05D027608 2.9e-66 256.5 246 58.1
Sp3g24280 Schrenkiella parvula HOM05D004230 ORTHO05D007976 1.1e-65 254.6 316 50.9
AL8G19300 Arabidopsis lyrata HOM05D004230 ORTHO05D000037 1.2e-64 251.1 202 65.8
BraA09t39059Z Brassica rapa HOM05D004230 ORTHO05D007976 4.6e-64 249.2 313 48.9
C07p53510 Brassica napus HOM05D004230 ORTHO05D027608 1.3e-63 247.7 246 56.1
BraA06t26555Z Brassica rapa HOM05D004230 ORTHO05D007976 1.3e-63 247.7 288 49.3
C01p22890 Brassica napus HOM05D004230 ORTHO05D007976 6.7e-63 245.4 123 97.6
Sp4g02630 Schrenkiella parvula HOM05D004230 ORTHO05D007976 6.7e-63 245.4 285 49.1
BcaC09g49449 Brassica carinata HOM05D004230 ORTHO05D007976 1.1e-62 244.6 267 53.2
AT3G32904 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 4.3e-62 242.7 291 48.1
BcaB06g27526 Brassica carinata HOM05D004230 ORTHO05D007976 4.3e-62 242.7 350 44.6
A09p35300 Brassica napus HOM05D004230 ORTHO05D007976 1.1e-60 238.0 309 47.6
BcaC01g03708 Brassica carinata HOM05D004230 ORTHO05D007976 6.9e-60 235.3 268 52.2
BcaC05g28003 Brassica carinata HOM05D004230 ORTHO05D007976 1.2e-59 234.6 359 43.2
BolC8t50322H Brassica oleracea HOM05D004230 ORTHO05D007976 2.0e-59 233.8 301 46.8
AT3G30520 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 2.6e-59 233.4 277 48.0
Carub.0007s3042 Capsella rubella HOM05D004230 ORTHO05D007976 2.2e-58 230.3 215 60.0
BcaB06g26529 Brassica carinata HOM05D004230 ORTHO05D007976 1.9e-57 227.3 203 62.6
BcaB07g32180 Brassica carinata HOM05D004230 ORTHO05D007976 2.5e-57 226.9 241 53.5
BcaC07g39750 Brassica carinata HOM05D004230 ORTHO05D027608 7.9e-56 221.9 220 56.4
BolC8t50525H Brassica oleracea HOM05D004230 ORTHO05D027608 7.9e-56 221.9 220 56.4
BolC5t30511H Brassica oleracea HOM05D004230 ORTHO05D007976 6.7e-55 218.8 187 64.2
BolC3t20706H Brassica oleracea HOM05D004230 ORTHO05D007976 4.3e-54 216.1 259 47.5
BolC3t20713H Brassica oleracea HOM05D004230 ORTHO05D007976 1.1e-52 211.5 197 58.4
C05p40190 Brassica napus HOM05D004230 ORTHO05D007976 1.8e-52 210.7 268 46.3
A06p33140 Brassica napus HOM05D004230 ORTHO05D007976 2.9e-50 203.4 162 64.8
BolC5t32761H Brassica oleracea HOM05D004230 ORTHO05D007976 5.0e-50 202.6 260 45.4
AT1G43720 Arabidopsis thaliana HOM05D004230 ORTHO05D018474 4.7e-48 196.1 257 45.1
AT1G35820 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 3.0e-47 193.4 310 41.0
AL5G20550 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 5.1e-47 192.6 364 37.1
SpUn0171_0010 Schrenkiella parvula HOM05D004230 ORTHO05D007976 1.1e-46 191.4 170 61.2
BcaB04g18000 Brassica carinata HOM05D004230 ORTHO05D007976 1.5e-46 191.0 209 54.1
A06p20520 Brassica napus HOM05D004230 ORTHO05D007976 1.3e-45 188.0 350 39.7
BolC6t36485H Brassica oleracea HOM05D004230 ORTHO05D007976 1.4e-44 184.5 305 41.6
A03p38990 Brassica napus HOM05D004230 ORTHO05D007976 7.0e-44 182.2 299 40.8
AL5G11160 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 1.2e-43 181.4 127 66.1
Sp1g33580 Schrenkiella parvula HOM05D004230 ORTHO05D007976 3.5e-43 179.9 318 39.6
Carub.0007s3044 Capsella rubella HOM05D004230 ORTHO05D007976 4.2e-41 172.9 273 42.1
A03p63250 Brassica napus HOM05D004230 ORTHO05D007976 7.2e-41 172.2 167 56.9
BraA03t15403Z Brassica rapa HOM05D004230 ORTHO05D007976 7.2e-41 172.2 167 56.9
BraA06t25864Z Brassica rapa HOM05D004230 ORTHO05D018474 9.4e-41 171.8 234 44.0
C08p01070 Brassica napus HOM05D004230 ORTHO05D007976 2.7e-40 170.2 130 63.8
A06p33150 Brassica napus HOM05D004230 ORTHO05D007976 6.1e-40 169.1 116 73.3
AT3G42870 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 8.0e-40 168.7 312 39.7
BolC1t03622H Brassica oleracea HOM05D004230 ORTHO05D007976 7.4e-38 162.2 167 55.7
BolC3t17228H Brassica oleracea HOM05D004230 ORTHO05D007976 1.3e-37 161.4 105 70.5
C03p27690 Brassica napus HOM05D004230 ORTHO05D007976 9.1e-36 155.2 109 63.3
Carub.0007s3045 Capsella rubella HOM05D004230 ORTHO05D007976 2.0e-35 154.1 163 56.4
C05p46300 Brassica napus HOM05D004230 ORTHO05D007976 3.8e-34 149.8 109 61.5
Carub.0012s0003 Capsella rubella HOM05D004230 ORTHO05D007976 5.5e-33 146.0 187 49.7
BcaC02g08615 Brassica carinata HOM05D004230 ORTHO05D007976 2.1e-32 144.1 184 51.6
BolC5t33360H Brassica oleracea HOM05D004230 ORTHO05D007976 4.7e-32 142.9 130 53.1
Carub.0007s3014 Capsella rubella HOM05D004230 ORTHO05D007976 3.0e-31 140.2 344 32.6
C08p27070 Brassica napus HOM05D004230 ORTHO05D007976 4.0e-31 139.8 78 83.3
BcaC02g08607 Brassica carinata HOM05D004230 ORTHO05D018474 6.8e-31 139.0 195 44.1
BcaC06g34422 Brassica carinata HOM05D004230 ORTHO05D007976 7.5e-30 135.6 349 33.2
C02p00010 Brassica napus HOM05D004230 ORTHO05D007976 7.5e-30 135.6 137 51.1
BolC2t12231H Brassica oleracea HOM05D004230 ORTHO05D018474 7.5e-30 135.6 150 46.7
Sp5g19020 Schrenkiella parvula HOM05D004230 ORTHO05D007976 4.8e-29 132.9 175 49.1
BraA05t21003Z Brassica rapa HOM05D004230 ORTHO05D041249 1.4e-28 131.3 159 47.2
CARHR145800 Cardamine hirsuta HOM05D004230 ORTHO05D007976 2.0e-27 127.5 237 36.7
AL7G46530 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 4.5e-27 126.3 97 62.9
Sp2g07590 Schrenkiella parvula HOM05D004230 ORTHO05D007976 4.5e-27 126.3 135 57.8
Carub.0005s0823 Capsella rubella HOM05D004230 ORTHO05D007976 1.1e-25 121.7 277 33.9
BolC3t18593H Brassica oleracea HOM05D004230 ORTHO05D018474 4.2e-25 119.8 179 40.2
BcaC01g02567 Brassica carinata HOM05D004230 ORTHO05D018474 3.6e-24 116.7 179 39.7
BraA06t26245Z Brassica rapa HOM05D004230 ORTHO05D007976 4.7e-24 116.3 63 84.1
C01p41050 Brassica napus HOM05D004230 ORTHO05D024011 2.6e-22 110.5 107 55.1
BolC1t04060H Brassica oleracea HOM05D004230 ORTHO05D024011 2.6e-22 110.5 107 55.1
BolC4t26781H Brassica oleracea HOM05D004230 ORTHO05D018474 3.4e-22 110.2 170 41.8
AL7G44480 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 6.3e-21 105.9 159 42.1
BcaC09g49346 Brassica carinata HOM05D004230 ORTHO05D024011 1.6e-19 101.3 126 47.6
A09p29770 Brassica napus HOM05D004230 ORTHO05D007976 2.1e-16 90.9 156 40.4
AL1G50740 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 3.0e-15 87.0 83 54.2
AL3G43870 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 8.9e-15 85.5 79 45.6
BraA10t43214Z Brassica rapa HOM05D004230 ORTHO05D007976 1.5e-14 84.7 70 58.6
AL6G45690 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 1.3e-13 81.6 79 44.3
C08p27080 Brassica napus HOM05D004230 ORTHO05D042725 1.7e-10 71.2 47 61.7
BraA06t26246Z Brassica rapa HOM05D004230 ORTHO05D042725 2.9e-10 70.5 47 59.6
BolC2t08058H Brassica oleracea HOM05D004230 ORTHO05D007976 5.0e-10 69.7 57 59.6
A01p32030 Brassica napus HOM05D004230 ORTHO05D024011 1.1e-09 68.6 62 54.8
C07p15900 Brassica napus HOM05D004230 ORTHO05D007976 1.1e-09 68.6 57 57.9
BolC7t42083H Brassica oleracea HOM05D004230 ORTHO05D007976 3.3e-09 67.0 57 57.9
Sp3g29180 Schrenkiella parvula HOM05D004230 ORTHO05D007976 1.6e-08 64.7 137 32.1
A04p10960 Brassica napus HOM05D037366 ORTHO05D042224 6.1e-08 62.8 51 56.9
BraA04t16761Z Brassica rapa HOM05D037366 ORTHO05D042224 6.1e-08 62.8 51 56.9
BolC8t46909H Brassica oleracea HOM05D004230 ORTHO05D007976 8.0e-08 62.4 55 63.6
BcaC09g49284 Brassica carinata HOM05D004230 ORTHO05D007976 6.8e-07 59.3 39 71.8
A05p20980 Brassica napus HOM05D004230 ORTHO05D041249 6.8e-07 59.3 159 32.1
AL8G23470 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 2.0e-06 57.8 39 69.2
BcaC09g49285 Brassica carinata HOM05D004230 ORTHO05D032226 2.0e-06 57.8 67 46.3
BcaB05g22915 Brassica carinata HOM05D003348 ORTHO05D010016 3.4e-06 57.0 46 58.7
BraA06t27442Z Brassica rapa HOM05D004230 ORTHO05D007976 7.5e-06 55.8 69 47.8


User provided reference genes

Program Settings