Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49099 Brassica carinata HOM05D010757 ORTHO05D009635 9.6e-133 476.9 246 100.0
C01p42560 Brassica napus HOM05D010757 ORTHO05D009635 3.3e-48 196.1 100 100.0
BolC1t04209H Brassica oleracea HOM05D010757 ORTHO05D009635 3.3e-48 196.1 100 100.0
BraA01t03447Z Brassica rapa HOM05D010757 ORTHO05D009635 1.2e-47 194.1 100 99.0
BraA01t03448Z Brassica rapa HOM05D010757 ORTHO05D009635 1.2e-47 194.1 100 99.0
A01p33300 Brassica napus HOM05D010757 ORTHO05D009635 4.0e-46 189.1 100 97.0
BcaB04g20576 Brassica carinata HOM05D010757 ORTHO05D009635 3.9e-41 172.6 101 91.1
Thhalv10022045m.g Eutrema salsugineum HOM05D010757 ORTHO05D009635 6.6e-33 145.2 102 77.5
AL3G35800 Arabidopsis lyrata HOM05D010757 ORTHO05D009635 1.2e-31 141.0 102 75.5
AT3G21680 Arabidopsis thaliana HOM05D010757 ORTHO05D009635 2.1e-31 140.2 104 76.0
Sp3g19690 Schrenkiella parvula HOM05D010757 ORTHO05D009635 1.4e-30 137.5 100 74.0
C03p51830 Brassica napus HOM05D010757 ORTHO05D009635 4.0e-30 136.0 99 71.7
Carub.0003s2173 Capsella rubella HOM05D010757 ORTHO05D009635 4.4e-29 132.5 104 70.2
CARHR097620 Cardamine hirsuta HOM05D010757 ORTHO05D009635 1.3e-28 131.0 107 70.1
C02p12660 Brassica napus HOM05D016552 ORTHO05D017542 3.6e-23 112.8 65 89.2
BolC2t07363H Brassica oleracea HOM05D016552 ORTHO05D017542 1.2e-18 97.8 147 47.6
A03p42380 Brassica napus HOM05D010757 ORTHO05D009635 2.1e-18 97.1 71 70.4
BraA03t13390Z Brassica rapa HOM05D010757 ORTHO05D009635 2.1e-18 97.1 71 70.4
C01p42570 Brassica napus HOM05D016552 ORTHO05D017542 6.0e-18 95.5 122 52.5
BcaB04g19178 Brassica carinata HOM05D010757 ORTHO05D009635 2.3e-17 93.6 118 50.0
Sp7g13570 Schrenkiella parvula HOM05D010757 ORTHO05D009635 5.1e-17 92.4 102 58.8
BcaC01g03493 Brassica carinata HOM05D010757 ORTHO05D009635 9.6e-16 88.2 66 72.7
Thhalv10026860m.g Eutrema salsugineum HOM05D010757 ORTHO05D009635 5.8e-13 79.0 102 51.0
AL4G35730 Arabidopsis lyrata HOM05D004253 ORTHO05D005013 6.0e-10 68.9 47 72.3
A05p07590 Brassica napus HOM05D004253 ORTHO05D005013 1.3e-09 67.8 38 81.6
BraA05t19726Z Brassica rapa HOM05D004253 ORTHO05D005013 1.3e-09 67.8 38 81.6
Thhalv10016525m.g Eutrema salsugineum HOM05D004253 ORTHO05D005013 1.3e-09 67.8 38 81.6
Sp4g20780 Schrenkiella parvula HOM05D004253 ORTHO05D005013 1.3e-09 67.8 38 81.6
THA.LOC104806636 Tarenaya hassleriana HOM05D004253 ORTHO05D005013 1.3e-09 67.8 105 39.0
AT2G38460 Arabidopsis thaliana HOM05D004253 ORTHO05D005013 1.8e-09 67.4 38 81.6
CARHR133140 Cardamine hirsuta HOM05D004253 ORTHO05D005013 1.8e-09 67.4 38 81.6
BcaB02g09172 Brassica carinata HOM05D004253 ORTHO05D005013 3.9e-09 66.2 38 78.9
Aa31sc114G20 Aethionema arabicum HOM05D004253 ORTHO05D005013 5.1e-09 65.9 38 76.3
BcaC02g11997 Brassica carinata HOM05D004253 ORTHO05D005013 5.1e-09 65.9 38 78.9
C04p09070 Brassica napus HOM05D004253 ORTHO05D005013 5.1e-09 65.9 38 78.9
BolC4t22497H Brassica oleracea HOM05D004253 ORTHO05D005013 5.1e-09 65.9 38 78.9
Lj6C60G7 Lonicera japonica HOM05D001098 ORTHO05D003515 5.1e-09 65.9 34 91.2
GSVIVG01030252001 Vitis vinifera HOM05D004253 ORTHO05D005013 6.7e-09 65.5 115 36.5
BolC1t04210H Brassica oleracea HOM05D016552 ORTHO05D017542 8.7e-09 65.1 34 100.0
Carub.0004s2043 Capsella rubella HOM05D004253 ORTHO05D005013 1.1e-08 64.7 36 83.3
GSVIVG01030250001 Vitis vinifera HOM05D004253 ORTHO05D005013 1.1e-08 64.7 38 73.7
A03p01250 Brassica napus HOM05D004253 ORTHO05D005013 3.3e-08 63.2 97 40.2
Ca_27544_v3 Cicer arietinum L. HOM05D004253 ORTHO05D005013 3.3e-08 63.2 90 40.0
BraA03t09505Z Brassica rapa HOM05D004253 ORTHO05D005013 4.3e-08 62.8 104 41.3
ClCG04G006590 Citrullus lanatus HOM05D004253 ORTHO05D005013 4.3e-08 62.8 38 71.1
Eucgr.A00635 Eucalyptus grandis HOM05D004253 ORTHO05D005013 4.3e-08 62.8 38 73.7
Ciclev10011564m.g Citrus clementina HOM05D004253 ORTHO05D005013 5.6e-08 62.4 38 71.1
MELO3C026034.2 Cucumis melo HOM05D004253 ORTHO05D005013 5.6e-08 62.4 38 68.4
CsaV3_4G026660 Cucumis sativus L. HOM05D004253 ORTHO05D005013 5.6e-08 62.4 38 68.4
Dinv25280 Davidia involucrata HOM05D004253 ORTHO05D005013 5.6e-08 62.4 111 35.1
Phvul.010G062200 Phaseolus vulgaris HOM05D004253 ORTHO05D005013 5.6e-08 62.4 91 42.9
Sed0018512 Sechium edule HOM05D004253 ORTHO05D005013 5.6e-08 62.4 38 68.4
ATR0594G059 Amborella trichopoda HOM05D004253 ORTHO05D005013 7.4e-08 62.0 89 39.3
Aqoxy4G02184 Aquilegia oxysepala HOM05D004253 ORTHO05D005013 7.4e-08 62.0 38 71.1
AT5G03570 Arabidopsis thaliana HOM05D004253 ORTHO05D005013 7.4e-08 62.0 38 73.7
BcaB01g05801 Brassica carinata HOM05D004253 ORTHO05D005013 7.4e-08 62.0 97 40.2
BolC3t12713H Brassica oleracea HOM05D004253 ORTHO05D005013 7.4e-08 62.0 97 40.2
CSS0016892 Camellia sinensis var. sinensis HOM05D004253 ORTHO05D005013 7.4e-08 62.0 36 72.2
CARHR209750 Cardamine hirsuta HOM05D004253 ORTHO05D005013 7.4e-08 62.0 75 46.7
Thhalv10013299m.g Eutrema salsugineum HOM05D004253 ORTHO05D005013 7.4e-08 62.0 112 40.2
Glyma.01G128300 Glycine max HOM05D004253 ORTHO05D005013 7.4e-08 62.0 96 38.5
Hma1.2p1_0501F.1_g167250 Hydrangea macrophylla HOM05D004253 ORTHO05D005013 7.4e-08 62.0 36 72.2
Medtr4g013240 Medicago truncatula HOM05D004253 ORTHO05D005013 7.4e-08 62.0 90 41.1
CAN.G955.1 Capsicum annuum HOM05D004253 ORTHO05D005013 9.6e-08 61.6 36 69.4
Peaxi162Scf00264g00861 Petunia axillaris HOM05D004253 ORTHO05D005013 9.6e-08 61.6 36 69.4
Solyc10g076280.3 Solanum lycopersicum HOM05D004253 ORTHO05D005013 9.6e-08 61.6 36 69.4
Sopen10g027900 Solanum pennellii HOM05D004253 ORTHO05D005013 9.6e-08 61.6 36 69.4
PGSC0003DMG400011865 Solanum tuberosum HOM05D004253 ORTHO05D005013 9.6e-08 61.6 36 69.4
arahy.Tifrunner.gnm1.ann1.ASGW3G Arachis hypogaea HOM05D004253 ORTHO05D005013 1.3e-07 61.2 36 72.2
arahy.Tifrunner.gnm1.ann1.E0KVE0 Arachis hypogaea HOM05D004253 ORTHO05D005013 1.3e-07 61.2 36 72.2
BcaB01g05813 Brassica carinata HOM05D004253 ORTHO05D005013 1.3e-07 61.2 75 46.7
C03p01610 Brassica napus HOM05D004253 ORTHO05D005013 1.3e-07 61.2 75 46.7
Migut.J00086 Erythranthe guttata HOM05D004253 ORTHO05D005013 1.3e-07 61.2 36 72.2
Nitab4.5_0000355g0170 Nicotiana tabacum HOM05D004253 ORTHO05D005013 1.3e-07 61.2 36 69.4
Sp6g39180 Schrenkiella parvula HOM05D004253 ORTHO05D005013 1.3e-07 61.2 38 71.1
Hund19850 Selenicereus undatus HOM05D004253 ORTHO05D005013 1.3e-07 61.2 36 72.2
TWI53G0484 Tripterygium wilfordii HOM05D004253 ORTHO05D005013 1.3e-07 61.2 41 61.0
VMungo0331G0982 Vigna mungo HOM05D004253 ORTHO05D005013 1.3e-07 61.2 38 63.2
Atru.chr8.2352 Acer truncatum HOM05D004253 ORTHO05D005013 1.6e-07 60.8 38 65.8
Lsat_1_v5_gn_9_37021 Lactuca sativa HOM05D004253 ORTHO05D005013 1.6e-07 60.8 87 37.9
Lj3g0025170 Lotus japonicus HOM05D004253 ORTHO05D005013 1.6e-07 60.8 93 40.9
Lj3g0027471 Lotus japonicus HOM05D004253 ORTHO05D005013 1.6e-07 60.8 38 65.8
SalBow5G5570 Salvia bowleyana HOM05D004253 ORTHO05D005013 1.6e-07 60.8 36 69.4
Thecc.05G005300 Theobroma cacao HOM05D004253 ORTHO05D005013 1.6e-07 60.8 38 65.8
Lalb_Chr13g0291391 Lupinus albus HOM05D004253 ORTHO05D005013 2.1e-07 60.5 38 65.8
MD12G1181400 Malus domestica HOM05D004253 ORTHO05D005013 2.1e-07 60.5 38 65.8
Potri.016G128600 Populus trichocarpa HOM05D004253 ORTHO05D005013 2.1e-07 60.5 38 65.8
CSS0015068 Camellia sinensis var. sinensis HOM05D004253 ORTHO05D005013 2.8e-07 60.1 36 66.7
Medtr4g013245 Medicago truncatula HOM05D004253 ORTHO05D005013 2.8e-07 60.1 90 40.0
Oeu026968.1 Olea europaea HOM05D004253 ORTHO05D005013 2.8e-07 60.1 120 39.2
Phvul.010G062300 Phaseolus vulgaris HOM05D004253 ORTHO05D005013 2.8e-07 60.1 36 66.7
TPR.G5208 Trifolium pratense HOM05D004253 ORTHO05D005013 2.8e-07 60.1 89 40.4
VMungo0331G0711 Vigna mungo HOM05D004253 ORTHO05D005013 2.8e-07 60.1 91 39.6
Duzib093G0769 Durio zibethinus HOM05D004253 ORTHO05D005013 3.7e-07 59.7 38 65.8
Nitab4.5_0012987g0010 Nicotiana tabacum HOM05D004253 ORTHO05D005013 3.7e-07 59.7 36 69.4
Thecc.05G005200 Theobroma cacao HOM05D004253 ORTHO05D005013 3.7e-07 59.7 38 63.2
Actinidia29061 Actinidia chinensis HOM05D004253 ORTHO05D005013 4.8e-07 59.3 38 65.8
Aa31LG1G21620 Aethionema arabicum HOM05D004253 ORTHO05D005013 4.8e-07 59.3 38 65.8
AL6G13070 Arabidopsis lyrata HOM05D004253 ORTHO05D005013 4.8e-07 59.3 145 34.5
ECA247G0592 Erigeron canadensis HOM05D004253 ORTHO05D005013 4.8e-07 59.3 38 65.8
Eucgr.A00632 Eucalyptus grandis HOM05D004253 ORTHO05D005013 4.8e-07 59.3 102 35.3
Glyma.03G042400 Glycine max HOM05D004253 ORTHO05D005013 4.8e-07 59.3 38 63.2
QL07p033645 Quercus lobata HOM05D004253 ORTHO05D005013 4.8e-07 59.3 38 57.9
RcHm_v2.0_Chr6g0247161 Rosa chinensis HOM05D004253 ORTHO05D005013 4.8e-07 59.3 36 72.2
CiPaw.09G216400 Carya illinoinensis HOM05D004253 ORTHO05D005013 6.2e-07 58.9 38 60.5
Eucgr.A00629 Eucalyptus grandis HOM05D004253 ORTHO05D005013 6.2e-07 58.9 38 60.5
Eucgr.A00634 Eucalyptus grandis HOM05D004253 ORTHO05D005013 6.2e-07 58.9 38 63.2
MSTRG.18966 Avicennia marina HOM05D004253 ORTHO05D005013 8.1e-07 58.5 90 40.0
CiPaw.09G216200 Carya illinoinensis HOM05D004253 ORTHO05D005013 8.1e-07 58.5 38 60.5
DCAR_023991 Daucus carota HOM05D004253 ORTHO05D005013 8.1e-07 58.5 36 63.9
DCAR_027528 Daucus carota HOM05D001098 ORTHO05D003515 8.1e-07 58.5 49 65.3
MBI15_g03641_MAGBIO Magnolia biondii HOM05D004253 ORTHO05D005013 8.1e-07 58.5 38 63.2
Rhsim05G0226800 Rhododendron simsii HOM05D004253 ORTHO05D005013 8.1e-07 58.5 34 67.6
Sed0023395 Sechium edule HOM05D004253 ORTHO05D005013 8.1e-07 58.5 38 63.2
Gohir.A01G170500 Gossypium hirsutum HOM05D004253 ORTHO05D005013 1.1e-06 58.2 38 60.5
Gohir.D01G161500 Gossypium hirsutum HOM05D004253 ORTHO05D005013 1.1e-06 58.2 38 60.5
Gorai.002G200200 Gossypium raimondii HOM05D004253 ORTHO05D005013 1.1e-06 58.2 38 60.5
RcHm_v2.0_Chr3g0461441 Rosa chinensis HOM05D004253 ORTHO05D005013 1.1e-06 58.2 38 63.2
RcHm_v2.0_Chr3g0461451 Rosa chinensis HOM05D004253 ORTHO05D005013 1.1e-06 58.2 38 63.2
Sc02g0000650 Simmondsia chinensis HOM05D004253 ORTHO05D005013 1.1e-06 58.2 36 66.7
Carub.0006s0241 Capsella rubella HOM05D004253 ORTHO05D005013 1.4e-06 57.8 133 36.8
COL.COLO4_14437 Corchorus olitorius HOM05D004253 ORTHO05D005013 1.4e-06 57.8 38 65.8
TAR633G0963 Trochodendron aralioides HOM05D004253 ORTHO05D005013 1.4e-06 57.8 36 66.7
vmacro20334 Vaccinium macrocarpon HOM05D004253 ORTHO05D005013 1.4e-06 57.8 38 60.5
Cc00_g33920 Coffea canephora HOM05D004253 ORTHO05D005013 1.8e-06 57.4 36 66.7
Cc06_g00690 Coffea canephora HOM05D004253 ORTHO05D005013 1.8e-06 57.4 36 66.7
COL.COLO4_17446 Corchorus olitorius HOM05D004253 ORTHO05D005013 1.8e-06 57.4 34 67.6
FAN02G2747 Fragaria x ananassa HOM05D004253 ORTHO05D005013 1.8e-06 57.4 38 63.2
FAN05G1507 Fragaria x ananassa HOM05D004253 ORTHO05D005013 1.8e-06 57.4 38 63.2
FAN05G3841 Fragaria x ananassa HOM05D004253 ORTHO05D005013 1.8e-06 57.4 38 63.2
FAN09G3783 Fragaria x ananassa HOM05D004253 ORTHO05D005013 1.8e-06 57.4 38 63.2
PSO349G0244 Papaver somniferum HOM05D004253 ORTHO05D005013 1.8e-06 57.4 38 65.8
Potri.016G128500 Populus trichocarpa HOM05D004253 ORTHO05D005013 2.4e-06 57.0 38 60.5
SMO115G0243 Selaginella moellendorffii HOM05D004253 ORTHO05D005013 2.4e-06 57.0 69 46.4
FvH4_6g10490 Fragaria vesca HOM05D004253 ORTHO05D005013 3.1e-06 56.6 38 63.2
HanXRQChr15g0463391 Helianthus annuus HOM05D004253 ORTHO05D005013 3.1e-06 56.6 88 35.2
Manes.09G113100 Manihot esculenta HOM05D004253 ORTHO05D005013 3.1e-06 56.6 38 57.9
Nn2g13286 Nelumbo nucifera HOM05D004253 ORTHO05D005013 3.1e-06 56.6 38 63.2
Psat7g249920 Pisum sativum HOM05D004253 ORTHO05D005013 3.1e-06 56.6 153 30.1
MSTRG.18968 Avicennia marina HOM05D004253 ORTHO05D005013 4.0e-06 56.2 89 38.2
EL10Ac7g17016 Beta vulgaris HOM05D004253 ORTHO05D005013 4.0e-06 56.2 95 36.8
Duzib093G0299 Durio zibethinus HOM05D001098 ORTHO05D003515 4.0e-06 56.2 49 65.3
Os06g0560000 Oryza sativa ssp. japonica HOM05D004253 ORTHO05D005013 4.0e-06 56.2 36 63.9
PGR031G1936 Punica granatum HOM05D004253 ORTHO05D005013 4.0e-06 56.2 38 60.5
EL10Ac7g16784 Beta vulgaris HOM05D004253 ORTHO05D005013 5.3e-06 55.8 36 63.9
EL10As8g23831 Beta vulgaris HOM05D004253 ORTHO05D005013 5.3e-06 55.8 36 63.9
Nn5g27904 Nelumbo nucifera HOM05D004253 ORTHO05D005013 5.3e-06 55.8 38 57.9
Prupe.6G286200 Prunus persica HOM05D004253 ORTHO05D005013 5.3e-06 55.8 38 60.5
BcaC03g14026 Brassica carinata HOM05D016552 ORTHO05D017542 6.9e-06 55.5 34 79.4
SalBow3G4600 Salvia bowleyana HOM05D001098 ORTHO05D003515 6.9e-06 55.5 54 57.4
Lj3g0011406 Lotus japonicus HOM05D004253 ORTHO05D005013 9.0e-06 55.1 38 60.5
Nitab4.5_0001003g0120 Nicotiana tabacum HOM05D001098 ORTHO05D003515 9.0e-06 55.1 49 63.3
HPP92_012007 Vanilla planifolia HOM05D004253 ORTHO05D005013 9.0e-06 55.1 38 55.3
HPP92_012012 Vanilla planifolia HOM05D004253 ORTHO05D005013 9.0e-06 55.1 38 55.3


User provided reference genes

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