Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49094 Brassica carinata HOM05D001921 ORTHO05D001784 4.5e-71 271.2 139 100.0
C01p42590 Brassica napus HOM05D001921 ORTHO05D001784 2.9e-70 268.5 139 99.3
BolC1t04216H Brassica oleracea HOM05D001921 ORTHO05D001784 2.9e-70 268.5 139 99.3
A01p33350 Brassica napus HOM05D001921 ORTHO05D001784 3.2e-69 265.0 139 98.6
BraA01t03453Z Brassica rapa HOM05D001921 ORTHO05D001784 3.2e-69 265.0 139 98.6
BcaB04g20578 Brassica carinata HOM05D001921 ORTHO05D001784 4.1e-64 248.1 139 92.1
Sp3g19600 Schrenkiella parvula HOM05D001921 ORTHO05D001784 1.2e-55 219.9 142 83.8
AL3G35680 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 9.5e-53 210.3 139 80.6
AT3G21570 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 6.1e-52 207.6 139 79.1
CARHR097520 Cardamine hirsuta HOM05D001921 ORTHO05D001784 3.4e-50 201.8 143 77.6
Carub.0003s2161 Capsella rubella HOM05D001921 ORTHO05D001784 1.4e-48 196.4 141 76.6
Aa31LG8G8240 Aethionema arabicum HOM05D001921 ORTHO05D001784 2.2e-41 172.6 151 68.2
THA.LOC104820224 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 3.1e-27 125.6 159 55.3
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 8.4e-17 90.9 180 40.6
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 5.4e-16 88.2 210 35.7
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 9.3e-16 87.4 206 37.9
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 1.2e-15 87.0 203 35.0
Sed0022941 Sechium edule HOM05D001921 ORTHO05D001784 1.2e-15 87.0 171 39.2
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 1.6e-15 86.7 203 35.0
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 1.6e-15 86.7 206 37.9
Lalb_Chr12g0196391 Lupinus albus HOM05D001921 ORTHO05D001784 1.6e-15 86.7 151 38.4
Atru.chr4.2710 Acer truncatum HOM05D001921 ORTHO05D001784 2.7e-15 85.9 190 40.5
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 4.6e-15 85.1 180 37.8
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.3e-14 83.6 204 37.3
CiPaw.01G156200 Carya illinoinensis HOM05D001921 ORTHO05D001784 5.1e-14 81.6 204 35.8
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 5.1e-14 81.6 200 36.0
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 5.1e-14 81.6 181 38.7
Nitab4.5_0003070g0060 Nicotiana tabacum HOM05D001921 ORTHO05D001784 5.1e-14 81.6 181 36.5
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 8.7e-14 80.9 209 34.9
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.1e-13 80.5 207 34.8
Nitab4.5_0000059g0260 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.5e-13 80.1 186 35.5
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 1.9e-13 79.7 196 32.7
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 1.9e-13 79.7 204 36.3
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 3.3e-13 79.0 188 35.6
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 3.3e-13 79.0 188 35.6
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 3.3e-13 79.0 176 40.3
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 3.3e-13 79.0 199 35.2
PGR004G0777 Punica granatum HOM05D001921 ORTHO05D001784 4.3e-13 78.6 194 35.6
Glyma.17G021000 Glycine max HOM05D001921 ORTHO05D001784 7.3e-13 77.8 177 36.7
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 1.3e-12 77.0 195 32.3
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 2.1e-12 76.3 204 34.8
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 2.1e-12 76.3 188 36.7
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.8e-12 75.9 180 36.7
Glyma.07G253400 Glycine max HOM05D001921 ORTHO05D001784 2.8e-12 75.9 165 37.0
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 2.8e-12 75.9 211 33.2
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 3.6e-12 75.5 200 36.5
PGR031G1199 Punica granatum HOM05D001921 ORTHO05D001784 3.6e-12 75.5 187 35.3
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 3.6e-12 75.5 201 36.3
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 4.8e-12 75.1 200 35.0
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 4.8e-12 75.1 200 35.0
Lalb_Chr15g0087151 Lupinus albus HOM05D001921 ORTHO05D001784 4.8e-12 75.1 188 34.6
CAN.G889.1 Capsicum annuum HOM05D001921 ORTHO05D001784 6.2e-12 74.7 213 31.0
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 6.2e-12 74.7 181 36.5
Nitab4.5_0009936g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 8.1e-12 74.3 169 39.6
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 8.1e-12 74.3 213 32.9
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 1.1e-11 73.9 185 37.3
Eucgr.H03650 Eucalyptus grandis HOM05D001921 ORTHO05D001784 1.4e-11 73.6 161 39.8
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.4e-11 73.6 184 37.0
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.4e-11 73.6 200 34.5
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 2.4e-11 72.8 204 35.8
Phvul.003G098700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 2.4e-11 72.8 175 34.9
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 3.1e-11 72.4 180 37.2
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.1e-11 72.4 180 37.2
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.1e-11 72.4 180 37.2
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 4.0e-11 72.0 191 34.0
PGSC0003DMG400030765 Solanum tuberosum HOM05D001921 ORTHO05D001784 4.0e-11 72.0 187 33.2
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 5.3e-11 71.6 213 32.9
Lalb_Chr18g0055871 Lupinus albus HOM05D001921 ORTHO05D001784 6.9e-11 71.2 182 34.6
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 6.9e-11 71.2 214 32.7
Nitab4.5_0002295g0070 Nicotiana tabacum HOM05D001921 ORTHO05D001784 9.0e-11 70.9 169 37.3
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 9.0e-11 70.9 181 32.6
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 1.2e-10 70.5 226 34.1
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 1.5e-10 70.1 214 32.7
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 3.4e-10 68.9 216 31.9
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 3.4e-10 68.9 184 37.0
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 3.4e-10 68.9 214 34.1
Peaxi162Scf00769g00001 Petunia axillaris HOM05D001921 ORTHO05D001784 3.4e-10 68.9 160 36.9
DCAR_030578 Daucus carota HOM05D001921 ORTHO05D001784 4.4e-10 68.6 177 33.9
TPR.G18029 Trifolium pratense HOM05D001921 ORTHO05D001784 4.4e-10 68.6 209 30.6
MBI19_g25275_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 5.8e-10 68.2 151 35.1
Psat4g028640 Pisum sativum HOM05D001921 ORTHO05D001784 5.8e-10 68.2 152 38.2
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 9.9e-10 67.4 198 35.4
FAN07G0769 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.3e-09 67.0 181 34.3
Lj4g0019196 Lotus japonicus HOM05D001921 ORTHO05D001784 1.3e-09 67.0 177 33.9
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 1.7e-09 66.6 204 31.9
Sc15g0003760 Simmondsia chinensis HOM05D001921 ORTHO05D001784 1.7e-09 66.6 141 39.0
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.2e-09 66.2 204 33.3
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.2e-09 66.2 204 33.3
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 2.2e-09 66.2 186 33.3
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.8e-09 65.5 204 33.3
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 3.8e-09 65.5 205 34.1
Aqoxy5G00575 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 6.4e-09 64.7 162 34.6
TPR.G28126 Trifolium pratense HOM05D001921 ORTHO05D001784 1.1e-08 63.9 162 35.8
Solyc06g054470.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 1.4e-08 63.5 187 31.6
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 1.9e-08 63.2 206 32.5
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.4e-08 62.8 52 67.3
Medtr4g118490 Medicago truncatula HOM05D001921 ORTHO05D001784 3.2e-08 62.4 137 36.5
VMungo1215G1281 Vigna mungo HOM05D001921 ORTHO05D001784 3.2e-08 62.4 161 34.2
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 4.2e-08 62.0 225 33.8
Sopen06g019540 Solanum pennellii HOM05D001921 ORTHO05D001784 7.1e-08 61.2 187 31.0
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 9.3e-08 60.8 194 32.0
DCAR_027127 Daucus carota HOM05D001921 ORTHO05D001784 9.3e-08 60.8 149 39.6
SGA_v2.0_scaffold57G20294 Striga asiatica HOM05D001921 ORTHO05D001784 9.3e-08 60.8 207 33.3
Oeu037657.1 Olea europaea HOM05D001921 ORTHO05D001784 1.2e-07 60.5 208 28.8
Cfa017851 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.6e-07 60.1 54 63.0
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.6e-07 60.1 191 31.4
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 2.1e-07 59.7 186 33.3
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 2.1e-07 59.7 216 31.9
HPP92_025281 Vanilla planifolia HOM05D001921 ORTHO05D001784 2.7e-07 59.3 171 35.1
Peaxi162Scf00095g00034 Petunia axillaris HOM05D001921 ORTHO05D001784 4.6e-07 58.5 177 30.5
MD03G1009700 Malus domestica HOM05D001921 ORTHO05D001784 7.9e-07 57.8 80 52.5
Os01g0384800 Oryza sativa ssp. japonica HOM05D001921 ORTHO05D001784 7.9e-07 57.8 142 40.8
CAN.G256.2 Capsicum annuum HOM05D001921 ORTHO05D001784 1.0e-06 57.4 198 31.8
Cc03_g02690 Coffea canephora HOM05D001921 ORTHO05D001784 1.0e-06 57.4 98 39.8
SGA_v2.0_scaffold89G27578 Striga asiatica HOM05D001921 ORTHO05D001784 1.0e-06 57.4 184 33.2
Ca_21561_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 1.3e-06 57.0 166 33.1
CDE11G0807 Ceratophyllum demersum HOM05D001921 ORTHO05D001784 1.7e-06 56.6 179 31.3
Cfa010136 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.3e-06 56.2 54 63.0
MSTRG.3970 Avicennia marina HOM05D001921 ORTHO05D001784 6.6e-06 54.7 59 50.8


User provided reference genes

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