Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 0.0e+00 1083.9 545 100.0
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 0.0e+00 1080.9 545 99.6
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 2.6e-311 1071.2 545 98.9
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 3.7e-302 1040.8 548 96.5
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 3.1e-285 984.6 548 90.5
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 1.7e-283 978.8 549 91.6
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 2.8e-278 961.4 548 88.5
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 8.3e-278 959.9 511 96.1
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 9.5e-274 946.4 552 87.3
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 5.2e-272 940.6 552 86.4
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 4.9e-270 934.1 550 85.8
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 6.4e-262 907.1 552 83.9
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 6.4e-254 880.6 552 83.3
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 5.6e-242 840.9 547 78.4
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 1.5e-226 789.6 551 73.9
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 1.2e-223 780.0 552 72.3
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 1.5e-223 779.6 552 72.5
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 2.0e-223 779.2 549 72.5
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 7.6e-223 777.3 550 71.6
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 1.3e-222 776.5 553 71.8
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 8.4e-222 773.9 552 71.7
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 5.5e-221 771.2 549 72.3
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 7.1e-221 770.8 550 72.2
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 2.1e-220 769.2 562 70.1
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 4.6e-220 768.1 557 70.6
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 6.0e-220 767.7 562 69.9
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 1.8e-219 766.1 541 72.8
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 5.1e-219 764.6 510 74.7
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 8.7e-219 763.8 402 91.8
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 8.7e-219 763.8 556 70.7
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 1.5e-218 763.1 513 75.6
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 1.9e-218 762.7 510 74.9
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 2.5e-218 762.3 514 74.5
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 4.3e-218 761.5 510 74.5
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.8e-217 758.8 510 74.3
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.7e-217 758.4 515 74.0
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 8.2e-217 757.3 510 74.1
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 4.9e-214 748.0 550 69.8
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 1.1e-213 746.9 555 69.4
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 1.4e-213 746.5 555 69.2
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 5.5e-213 744.6 538 70.4
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 1.2e-212 743.4 543 69.8
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 2.1e-212 742.7 555 68.8
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 2.7e-212 742.3 557 69.1
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 2.7e-212 742.3 561 68.3
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 6.0e-212 741.1 556 69.1
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 7.9e-212 740.7 556 69.1
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 5.1e-211 738.0 481 75.9
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 6.7e-211 737.6 487 75.2
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 1.5e-210 736.5 506 72.5
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 1.9e-210 736.1 541 69.7
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 2.5e-210 735.7 516 71.7
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 9.7e-210 733.8 553 68.9
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 1.1e-208 730.3 487 74.1
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 1.8e-208 729.6 550 69.5
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 1.5e-207 726.5 555 67.2
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 2.0e-207 726.1 550 68.5
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 2.6e-207 725.7 525 69.3
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 3.4e-207 725.3 516 70.9
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 4.5e-207 724.9 548 67.2
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 4.5e-207 724.9 548 67.3
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 8.5e-206 720.7 516 69.8
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 1.1e-205 720.3 560 67.3
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 5.5e-205 718.0 550 67.6
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 7.2e-205 717.6 561 65.8
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 9.3e-205 717.2 550 67.8
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 1.2e-204 716.8 549 67.6
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 1.6e-204 716.5 539 68.5
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 1.6e-204 716.5 548 66.4
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 1.6e-204 716.5 519 69.7
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 2.1e-204 716.1 527 69.1
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 2.1e-204 716.1 535 68.2
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 7.9e-204 714.1 522 69.0
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 1.3e-203 713.4 550 67.6
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 3.9e-203 711.8 535 67.7
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.5e-202 709.1 545 67.0
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 6.3e-201 704.5 551 65.5
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 1.1e-200 703.7 513 70.4
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 1.4e-200 703.4 516 68.8
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.8e-200 703.0 534 68.2
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 2.4e-200 702.6 550 65.6
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 4.1e-200 701.8 513 70.4
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 4.1e-200 701.8 513 68.8
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 5.3e-200 701.4 545 66.6
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 9.1e-200 700.7 523 68.3
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 1.2e-199 700.3 548 66.1
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 2.0e-199 699.5 547 66.0
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 2.6e-199 699.1 527 67.7
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 5.0e-198 694.9 552 65.0
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 3.2e-197 692.2 515 69.7
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.7e-196 689.1 570 63.0
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 4.7e-196 688.3 544 66.0
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 6.1e-196 688.0 556 64.4
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.8e-195 686.4 470 70.9
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 3.9e-195 685.3 520 66.7
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 4.4e-194 681.8 567 62.6
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 4.8e-193 678.3 564 63.1
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 1.8e-192 676.4 408 78.2
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 3.1e-192 675.6 562 63.3
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 5.3e-192 674.9 563 64.1
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 2.0e-191 672.9 537 63.9
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 3.4e-191 672.2 532 65.2
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 7.7e-191 671.0 559 62.8
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 7.7e-191 671.0 516 65.5
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 7.7e-191 671.0 516 65.5
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 1.3e-190 670.2 535 65.4
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 3.8e-190 668.7 564 62.2
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 3.8e-190 668.7 532 65.4
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 4.2e-189 665.2 559 62.4
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 7.2e-189 664.5 640 57.5
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.1e-188 662.9 522 66.7
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 1.0e-187 660.6 564 61.7
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 5.2e-187 658.3 537 64.1
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 2.0e-186 656.4 487 68.4
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 3.3e-186 655.6 462 70.3
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 4.4e-186 655.2 511 67.3
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 1.7e-185 653.3 549 64.7
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 4.1e-184 648.7 559 61.7
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 2.5e-181 639.4 533 62.7
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 3.4e-170 602.4 553 58.6
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 4.4e-170 602.1 559 56.7
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 6.5e-166 588.2 565 56.1
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 3.6e-164 582.4 493 61.5
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 4.3e-157 558.9 518 56.8
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 1.4e-155 553.9 556 55.6
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 1.7e-153 547.0 536 57.5
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 8.0e-148 528.1 560 53.0
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 7.5e-146 521.5 496 57.9
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 6.0e-143 511.9 535 54.2
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 4.7e-140 502.3 557 50.4
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 1.8e-131 473.8 428 60.3
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 6.8e-131 471.9 549 48.6
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 5.8e-130 468.8 375 65.3
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 4.2e-128 462.6 434 59.0
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 7.1e-128 461.8 375 65.6
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 9.2e-128 461.5 555 49.4
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.6e-127 460.7 352 67.6
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.2e-124 451.1 491 52.3
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.9e-105 386.7 398 56.5
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.6e-98 363.6 306 57.8
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 7.1e-96 355.5 547 41.7
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 3.1e-91 340.1 628 38.9
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 2.6e-69 267.3 321 51.7
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 2.5e-64 250.8 298 49.7
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 1.2e-58 231.9 461 34.1
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 2.9e-57 227.3 163 73.6
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 8.3e-52 209.1 238 51.7
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 2.4e-51 207.6 465 32.9
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 1.4e-46 191.8 438 32.4
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 5.7e-45 186.4 91 93.4
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 2.2e-44 184.5 118 79.7
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 6.3e-44 183.0 368 37.5
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 3.3e-40 170.6 96 80.2
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 7.3e-40 169.5 109 79.8
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 7.5e-37 159.5 405 30.1
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 2.0e-34 151.4 164 49.4
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 1.4e-30 138.7 157 47.8
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 3.5e-26 124.0 162 53.1
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 3.9e-25 120.6 149 55.0
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 2.2e-20 104.8 79 62.0
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 2.3e-17 94.7 157 38.9
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.2e-13 82.4 40 90.0
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 8.4e-12 76.3 48 68.8
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.9e-11 75.1 40 80.0
VMungo1215G0985 Vigna mungo HOM05D000464 ORTHO05D006292 7.8e-10 69.7 356 19.1
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 1.0e-09 69.3 98 45.9
MD09G1146400 Malus domestica HOM05D001610 ORTHO05D001585 3.3e-08 64.3 334 21.3
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 5.6e-08 63.5 33 75.8
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 7.3e-08 63.2 32 81.2
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 1.3e-07 62.4 241 26.6
BcaB04g21125 Brassica carinata HOM05D058416 ORTHO05D095930 2.1e-07 61.6 57 64.9
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 2.8e-07 61.2 233 24.0
BcaB02g10557 Brassica carinata HOM05D058416 ORTHO05D005017 2.8e-07 61.2 70 58.6
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 4.8e-07 60.5 241 26.1
Gorai.006G008900 Gossypium raimondii HOM05D001610 ORTHO05D001585 4.8e-07 60.5 338 22.5
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 1.4e-06 58.9 241 24.1
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 1.4e-06 58.9 241 24.1
GSVIVG01001162001 Vitis vinifera HOM05D002943 ORTHO05D002685 1.8e-06 58.5 77 39.0
BolC2t11036H Brassica oleracea HOM05D000992 ORTHO05D001928 2.4e-06 58.2 241 24.9
BcaB07g30396 Brassica carinata HOM05D000992 ORTHO05D001928 6.9e-06 56.6 241 24.9


User provided reference genes

Program Settings