Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 1.0e-188 663.3 340 100.0
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 3.1e-174 615.1 340 93.5
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 2.6e-173 612.1 340 93.2
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 2.6e-173 612.1 340 93.2
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 3.5e-173 611.7 340 93.5
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 9.1e-158 560.5 346 87.9
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 1.0e-156 557.0 343 85.7
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 9.8e-152 540.4 343 83.1
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 3.3e-147 525.4 342 81.0
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 2.3e-145 519.2 342 80.1
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 4.1e-142 508.4 342 80.1
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 6.6e-132 474.6 345 77.1
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 1.9e-123 446.4 345 71.6
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 2.5e-107 392.9 351 63.2
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 5.3e-97 358.6 352 59.4
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 6.9e-97 358.2 351 60.1
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 1.1e-94 350.9 350 56.6
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 1.8e-92 343.6 351 57.8
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 3.9e-92 342.4 347 57.3
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 5.1e-92 342.0 347 57.3
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 7.4e-91 338.2 285 63.5
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 7.4e-91 338.2 354 56.8
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 9.6e-91 337.8 350 58.3
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 9.6e-91 337.8 343 58.0
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 6.2e-90 335.1 340 58.5
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 3.1e-89 332.8 351 54.1
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 3.1e-89 332.8 351 54.1
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 9.0e-89 331.3 350 55.4
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 1.2e-88 330.9 349 55.9
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 2.0e-88 330.1 349 55.3
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 2.0e-88 330.1 282 62.8
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 4.5e-88 328.9 340 58.2
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 5.8e-88 328.6 346 55.5
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 1.0e-87 327.8 348 55.5
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 1.0e-87 327.8 350 55.1
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 2.2e-87 326.6 276 65.2
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 2.2e-87 326.6 350 55.4
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 2.2e-87 326.6 347 55.6
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 2.9e-87 326.2 345 55.9
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 2.9e-87 326.2 347 55.0
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 2.9e-87 326.2 349 55.3
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 3.8e-87 325.9 349 55.9
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 4.9e-87 325.5 345 55.9
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 8.4e-87 324.7 339 59.0
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 8.4e-87 324.7 345 55.4
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 1.1e-86 324.3 343 55.7
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 4.2e-86 322.4 287 62.7
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 4.2e-86 322.4 343 54.8
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 5.5e-86 322.0 343 56.6
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 2.7e-85 319.7 343 55.4
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 3.5e-85 319.3 350 53.7
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 3.5e-85 319.3 349 55.0
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 1.3e-84 317.4 348 55.5
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 6.7e-84 315.1 282 62.1
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 8.7e-84 314.7 352 54.0
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 2.5e-83 313.2 348 54.6
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 2.5e-83 313.2 351 52.4
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 2.5e-83 313.2 351 53.8
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 4.3e-83 312.4 343 53.1
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 5.7e-83 312.0 284 59.9
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 7.4e-83 311.6 354 52.5
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 2.1e-82 310.1 279 60.2
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 5.3e-81 305.4 346 52.9
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 1.2e-80 304.3 350 52.3
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 1.2e-80 304.3 344 52.0
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 1.5e-80 303.9 346 52.9
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 2.6e-80 303.1 328 52.4
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 2.6e-80 303.1 340 55.3
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 4.5e-80 302.4 354 53.4
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 5.8e-80 302.0 350 53.7
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 1.0e-79 301.2 350 52.9
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 2.2e-79 300.1 350 53.4
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 6.5e-79 298.5 344 53.5
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 1.1e-78 297.7 359 49.6
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 4.2e-78 295.8 349 51.0
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 5.5e-78 295.4 348 50.9
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 2.1e-77 293.5 344 52.6
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 3.0e-76 289.7 345 52.5
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 3.9e-76 289.3 359 48.5
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 3.9e-76 289.3 347 49.9
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 1.6e-74 283.9 351 50.4
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 2.8e-74 283.1 279 53.0
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 1.4e-73 280.8 325 52.6
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 2.6e-72 276.6 320 51.2
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 3.8e-71 272.7 288 53.8
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 3.6e-69 266.2 282 55.0
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 1.5e-67 260.8 129 100.0
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 1.3e-63 247.7 282 52.8
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 1.2e-61 241.1 325 46.2
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 2.7e-61 240.0 256 58.2
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 8.2e-58 228.4 280 45.4
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 1.4e-57 227.6 280 46.8
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 1.5e-56 224.2 209 58.9
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 1.3e-55 221.1 234 60.3
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 4.0e-44 183.0 135 67.4
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 1.6e-40 171.0 187 51.9
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 3.5e-40 169.9 271 36.5
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 4.0e-36 156.4 102 75.5
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 3.7e-34 149.8 220 48.2
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 2.4e-33 147.1 123 61.8
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 7.8e-24 115.5 280 33.6
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 1.9e-22 110.9 117 53.0
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 2.5e-22 110.5 297 33.3
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 2.9e-18 97.1 260 29.6
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 1.0e-15 88.6 106 51.9
MCO11G003 Micromonas commoda HOM05D007317 ORTHO05D009299 6.6e-15 85.9 285 27.4
Cre08.g369000 Chlamydomonas reinhardtii HOM05D007317 ORTHO05D009299 6.0e-08 62.8 346 25.1


User provided reference genes

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