Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48971 Brassica carinata HOM05D001606 ORTHO05D002266 4.5e-39 164.1 80 100.0
AL3G33930 Arabidopsis lyrata HOM05D001606 ORTHO05D002266 4.8e-17 90.9 85 68.2
AT3G20230 Arabidopsis thaliana HOM05D001606 ORTHO05D002266 4.8e-17 90.9 85 68.2
A05p28750 Brassica napus HOM05D001606 ORTHO05D002266 4.8e-17 90.9 85 68.2
C05p44160 Brassica napus HOM05D001606 ORTHO05D002266 4.8e-17 90.9 85 68.2
BolC5t33138H Brassica oleracea HOM05D001606 ORTHO05D002266 4.8e-17 90.9 85 68.2
BraA05t21752Z Brassica rapa HOM05D001606 ORTHO05D002266 4.8e-17 90.9 85 68.2
Carub.0003s2016 Capsella rubella HOM05D001606 ORTHO05D002266 1.1e-16 89.7 85 67.1
Sp3g18250 Schrenkiella parvula HOM05D001606 ORTHO05D002266 1.1e-16 89.7 85 67.1
Thhalv10021597m.g Eutrema salsugineum HOM05D001606 ORTHO05D002266 2.4e-16 88.6 85 67.1
Aa31LG8G7030 Aethionema arabicum HOM05D001606 ORTHO05D002266 3.8e-14 81.3 85 62.4
Duzib268G0624 Durio zibethinus HOM05D001606 ORTHO05D002266 5.0e-14 80.9 85 58.8
RcHm_v2.0_Chr7g0228601 Rosa chinensis HOM05D001606 ORTHO05D002266 2.5e-13 78.6 85 57.6
COL.COLO4_27895 Corchorus olitorius HOM05D001606 ORTHO05D002266 3.2e-13 78.2 85 56.5
FvH4_5g32310 Fragaria vesca HOM05D001606 ORTHO05D002266 3.2e-13 78.2 85 57.6
FAN04G1265 Fragaria x ananassa HOM05D001606 ORTHO05D002266 3.2e-13 78.2 85 57.6
FAN08G1364 Fragaria x ananassa HOM05D001606 ORTHO05D002266 3.2e-13 78.2 85 57.6
FAN18G1582 Fragaria x ananassa HOM05D001606 ORTHO05D002266 3.2e-13 78.2 85 57.6
Cpa.g.sc66.18 Carica papaya HOM05D001606 ORTHO05D002266 4.2e-13 77.8 85 56.5
FAN13G1630 Fragaria x ananassa HOM05D001606 ORTHO05D002266 4.2e-13 77.8 85 56.5
Gohir.A03G104100 Gossypium hirsutum HOM05D001606 ORTHO05D002266 4.2e-13 77.8 85 57.6
Gorai.005G145200 Gossypium raimondii HOM05D001606 ORTHO05D002266 4.2e-13 77.8 85 57.6
Sed0025058 Sechium edule HOM05D001606 ORTHO05D002266 4.2e-13 77.8 85 56.5
Prupe.1G551700 Prunus persica HOM05D001606 ORTHO05D002266 5.5e-13 77.4 85 56.5
TWI59G0728 Tripterygium wilfordii HOM05D001606 ORTHO05D002266 5.5e-13 77.4 85 57.6
EL10Ac1g00711 Beta vulgaris HOM05D001606 ORTHO05D002266 9.4e-13 76.6 85 52.9
ClCG11G008640 Citrullus lanatus HOM05D001606 ORTHO05D002266 9.4e-13 76.6 85 56.5
MD15G1410900 Malus domestica HOM05D001606 ORTHO05D002266 9.4e-13 76.6 85 56.5
Gohir.D02G129400 Gossypium hirsutum HOM05D001606 ORTHO05D002266 1.2e-12 76.3 85 56.5
Phvul.011G002800 Phaseolus vulgaris HOM05D001606 ORTHO05D002266 1.2e-12 76.3 85 57.6
Thecc.02G332200 Theobroma cacao HOM05D001606 ORTHO05D002266 1.2e-12 76.3 85 55.3
Glyma.08G238300 Glycine max HOM05D001606 ORTHO05D002266 2.1e-12 75.5 85 57.6
Ciclev10002753m.g Citrus clementina HOM05D001606 ORTHO05D002266 3.6e-12 74.7 85 55.3
Gohir.D03G140701 Gossypium hirsutum HOM05D001606 ORTHO05D002266 3.6e-12 74.7 85 55.3
Sabra19G0091900 Salix brachista HOM05D001606 ORTHO05D002266 3.6e-12 74.7 85 55.3
THA.LOC104799802 Tarenaya hassleriana HOM05D001606 ORTHO05D002266 3.6e-12 74.7 85 56.5
VMungo1127G1943 Vigna mungo HOM05D001606 ORTHO05D002266 3.6e-12 74.7 85 56.5
Glyma.12G000800 Glycine max HOM05D001606 ORTHO05D002266 4.7e-12 74.3 85 56.5
Gorai.003G147600 Gossypium raimondii HOM05D001606 ORTHO05D002266 4.7e-12 74.3 85 55.3
Lalb_Chr01g0000041 Lupinus albus HOM05D001606 ORTHO05D002266 4.7e-12 74.3 85 54.1
PGR042G3729 Punica granatum HOM05D001606 ORTHO05D002266 4.7e-12 74.3 84 54.8
TPR.G34146 Trifolium pratense HOM05D001606 ORTHO05D002266 4.7e-12 74.3 85 55.3
CiPaw.14G015800 Carya illinoinensis HOM05D001606 ORTHO05D002266 6.1e-12 73.9 85 54.1
vmacro21092 Vaccinium macrocarpon HOM05D001606 ORTHO05D002266 6.1e-12 73.9 85 52.9
Hund28481 Selenicereus undatus HOM05D001606 ORTHO05D002266 8.0e-12 73.6 85 51.8
Atru.chr13.2405 Acer truncatum HOM05D001606 ORTHO05D002266 1.0e-11 73.2 85 51.8
COL.COLO4_19323 Corchorus olitorius HOM05D001606 ORTHO05D002266 1.0e-11 73.2 85 51.8
Nn1g00638 Nelumbo nucifera HOM05D001606 ORTHO05D002266 1.0e-11 73.2 85 52.9
Os02g0689700 Oryza sativa ssp. japonica HOM05D001606 ORTHO05D002266 1.0e-11 73.2 85 51.8
Manes.02G195100 Manihot esculenta HOM05D001606 ORTHO05D002266 1.4e-11 72.8 85 52.9
Medtr4g032660 Medicago truncatula HOM05D001606 ORTHO05D002266 1.4e-11 72.8 85 54.1
Oeu002895.2 Olea europaea HOM05D001606 ORTHO05D002266 1.4e-11 72.8 85 52.9
Dinv44006 Davidia involucrata HOM05D001606 ORTHO05D002266 1.8e-11 72.4 85 52.9
Eucgr.F02580 Eucalyptus grandis HOM05D001606 ORTHO05D002266 1.8e-11 72.4 85 51.8
Psat7g226560 Pisum sativum HOM05D001606 ORTHO05D002266 1.8e-11 72.4 85 52.9
Potri.019G081000 Populus trichocarpa HOM05D001606 ORTHO05D002266 1.8e-11 72.4 85 55.3
Solyc01g088470.3 Solanum lycopersicum HOM05D001606 ORTHO05D002266 1.8e-11 72.4 85 52.9
Sopen01g035330 Solanum pennellii HOM05D001606 ORTHO05D002266 1.8e-11 72.4 85 52.9
PGSC0003DMG400001680 Solanum tuberosum HOM05D001606 ORTHO05D002266 1.8e-11 72.4 85 52.9
SGA_v2.0_scaffold95G28729 Striga asiatica HOM05D001606 ORTHO05D002266 1.8e-11 72.4 85 52.9
Ca_19710_v3 Cicer arietinum L. HOM05D001606 ORTHO05D002266 2.3e-11 72.0 85 51.8
Haze_02918 Corylus avellana HOM05D001606 ORTHO05D002266 2.3e-11 72.0 85 51.8
Potri.013G108700 Populus trichocarpa HOM05D001606 ORTHO05D002266 2.3e-11 72.0 85 54.1
Sabra13G0094000 Salix brachista HOM05D001606 ORTHO05D002266 2.3e-11 72.0 85 54.1
GSVIVG01026787001 Vitis vinifera HOM05D001606 ORTHO05D002266 2.3e-11 72.0 85 54.1
Dinv43579 Davidia involucrata HOM05D001606 ORTHO05D002266 3.0e-11 71.6 85 52.9
Lj3g0019554 Lotus japonicus HOM05D001606 ORTHO05D002266 3.0e-11 71.6 85 50.6
ATR0057G074 Amborella trichopoda HOM05D001606 ORTHO05D002266 4.0e-11 71.2 85 51.8
CAN.G756.4 Capsicum annuum HOM05D001606 ORTHO05D002266 4.0e-11 71.2 85 52.9
AUR62013792 Chenopodium quinoa HOM05D001606 ORTHO05D002266 4.0e-11 71.2 85 50.6
AUR62023363 Chenopodium quinoa HOM05D001606 ORTHO05D002266 4.0e-11 71.2 85 50.6
Hma1.2p1_1440F.1_g283560 Hydrangea macrophylla HOM05D001606 ORTHO05D002266 4.0e-11 71.2 85 50.6
Rhsim01G0144700 Rhododendron simsii HOM05D001606 ORTHO05D002266 4.0e-11 71.2 85 51.8
SalBow5G3716 Salvia bowleyana HOM05D001606 ORTHO05D002266 4.0e-11 71.2 85 54.1
Actinidia05796 Actinidia chinensis HOM05D001606 ORTHO05D002266 5.2e-11 70.9 85 51.8
Aqoxy3G02525 Aquilegia oxysepala HOM05D001606 ORTHO05D002266 5.2e-11 70.9 85 54.1
Cfa022164 Carpinus fangiana HOM05D001606 ORTHO05D002266 5.2e-11 70.9 85 51.8
Peaxi162Scf00745g00320 Petunia axillaris HOM05D001606 ORTHO05D002266 5.2e-11 70.9 85 51.8
arahy.Tifrunner.gnm1.ann1.WYVN3V Arachis hypogaea HOM05D001606 ORTHO05D002266 6.7e-11 70.5 85 50.6
Lj9P548T42 Lonicera japonica HOM05D001606 ORTHO05D002266 6.7e-11 70.5 85 51.8
CSS0049918 Camellia sinensis var. sinensis HOM05D001606 ORTHO05D002266 8.8e-11 70.1 85 50.6
Sabra19G0091800 Salix brachista HOM05D001606 ORTHO05D002266 8.8e-11 70.1 85 52.9
TAR636G0807 Trochodendron aralioides HOM05D001606 ORTHO05D002266 8.8e-11 70.1 85 50.6
Thecc.10G001800 Theobroma cacao HOM05D001606 ORTHO05D002266 1.1e-10 69.7 85 51.8
HPP92_025676 Vanilla planifolia HOM05D001606 ORTHO05D002266 1.1e-10 69.7 85 50.6
Zm00001eb251090 Zea mays HOM05D001606 ORTHO05D002266 1.1e-10 69.7 85 49.4
arahy.Tifrunner.gnm1.ann1.93XEYI Arachis hypogaea HOM05D001606 ORTHO05D002266 1.5e-10 69.3 85 49.4
CDE02G2147 Ceratophyllum demersum HOM05D001606 ORTHO05D002266 1.5e-10 69.3 85 49.4
CDE11G1208 Ceratophyllum demersum HOM05D001606 ORTHO05D002266 1.5e-10 69.3 85 49.4
DCAR_029532 Daucus carota HOM05D001606 ORTHO05D002266 1.5e-10 69.3 85 50.6
Nitab4.5_0008210g0060 Nicotiana tabacum HOM05D001606 ORTHO05D002266 1.5e-10 69.3 85 49.4
QL04p025810 Quercus lobata HOM05D001606 ORTHO05D002266 1.5e-10 69.3 85 50.6
arahy.Tifrunner.gnm1.ann1.TXGY4M Arachis hypogaea HOM05D001606 ORTHO05D002266 2.0e-10 68.9 85 48.2
Cc02_g25780 Coffea canephora HOM05D001606 ORTHO05D002266 2.0e-10 68.9 85 50.6
CSS0023606 Camellia sinensis var. sinensis HOM05D001606 ORTHO05D002266 2.6e-10 68.6 85 48.2
unitig_26.g8866 Utricularia gibba HOM05D001606 ORTHO05D002266 2.6e-10 68.6 85 52.9
CANSAT25G0786 Cannabis sativa HOM05D001606 ORTHO05D002266 3.3e-10 68.2 85 49.4
CANSAT25G0989 Cannabis sativa HOM05D001606 ORTHO05D002266 3.3e-10 68.2 85 49.4
Prupe.2G113900 Prunus persica HOM05D001606 ORTHO05D002266 5.7e-10 67.4 85 50.6
HanXRQChr11g0344071 Helianthus annuus HOM05D001606 ORTHO05D002266 7.5e-10 67.0 85 49.4
BcaB06g26095 Brassica carinata HOM05D001606 ORTHO05D002266 1.3e-09 66.2 68 63.2
ECA248G0398 Erigeron canadensis HOM05D001606 ORTHO05D002266 1.3e-09 66.2 85 49.4
MSTRG.20655 Avicennia marina HOM05D001606 ORTHO05D002266 1.7e-09 65.9 85 50.6
PSO063G7249 Papaver somniferum HOM05D001606 ORTHO05D002266 1.7e-09 65.9 85 48.2
PSO782G2452 Papaver somniferum HOM05D001606 ORTHO05D002266 1.7e-09 65.9 85 48.2
Migut.B01475 Erythranthe guttata HOM05D001606 ORTHO05D002266 2.2e-09 65.5 85 49.4
MD07G1087000 Malus domestica HOM05D001606 ORTHO05D002266 2.8e-09 65.1 85 47.1
Sc26g0001810 Simmondsia chinensis HOM05D001606 ORTHO05D002266 2.8e-09 65.1 83 48.2
Lsat_1_v5_gn_0_4920 Lactuca sativa HOM05D001606 ORTHO05D002266 4.8e-09 64.3 85 45.9
Sed0018739 Sechium edule HOM05D001606 ORTHO05D002266 4.8e-09 64.3 85 48.2
RcHm_v2.0_Chr1g0343581 Rosa chinensis HOM05D001606 ORTHO05D002266 1.4e-08 62.8 85 45.9
BcaC05g27884 Brassica carinata HOM05D001606 ORTHO05D021844 2.4e-08 62.0 80 53.8
MELO3C006255.2 Cucumis melo HOM05D001606 ORTHO05D002266 1.2e-07 59.7 84 46.4
CsaV3_3G010320 Cucumis sativus L. HOM05D001606 ORTHO05D002266 1.2e-07 59.7 84 46.4
FAN03G2882 Fragaria x ananassa HOM05D001606 ORTHO05D002266 2.7e-07 58.5 85 43.5
FAN10G0932 Fragaria x ananassa HOM05D001606 ORTHO05D002266 2.7e-07 58.5 85 43.5
FAN10G2446 Fragaria x ananassa HOM05D001606 ORTHO05D002266 2.7e-07 58.5 85 43.5
FvH4_7g08610 Fragaria vesca HOM05D001606 ORTHO05D002266 3.5e-07 58.2 85 43.5
SMO137G0133 Selaginella moellendorffii HOM05D001606 ORTHO05D002266 2.2e-06 55.5 83 42.2


User provided reference genes

Program Settings