Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 0.0e+00 2019.6 1022 100.0
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1869.4 1103 88.8
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 0.0e+00 1866.7 1103 88.8
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 0.0e+00 1798.5 1104 85.9
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1787.7 1104 85.4
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 0.0e+00 1613.6 1118 77.1
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 0.0e+00 1611.7 1117 76.5
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 0.0e+00 1595.9 1115 75.6
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 0.0e+00 1582.4 1115 75.2
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 0.0e+00 1577.4 1118 75.1
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 0.0e+00 1473.0 1107 70.9
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 0.0e+00 1457.6 1040 74.7
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 0.0e+00 1308.5 1119 64.0
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 1.3e-305 1053.1 1125 53.1
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 5.9e-301 1037.7 1122 51.3
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 1.4e-299 1033.1 1125 51.6
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 1.9e-299 1032.7 1138 51.8
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 2.3e-297 1025.8 1125 51.0
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 3.3e-296 1021.9 1125 50.3
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 4.3e-296 1021.5 1130 51.4
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 2.6e-293 1012.3 1117 50.6
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 8.5e-292 1007.3 1113 51.6
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 7.2e-291 1004.2 1139 50.5
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 1.4e-289 1000.0 1127 50.5
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 6.7e-289 997.7 1114 51.1
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 1.8e-286 989.6 1125 49.8
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 3.1e-286 988.8 1129 49.5
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 7.7e-285 984.2 1120 50.4
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 7.7e-285 984.2 1121 49.9
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 1.0e-284 983.8 1121 49.4
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 5.0e-284 981.5 1130 49.8
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 4.2e-283 978.4 1118 50.3
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 1.2e-282 976.9 1133 49.8
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 2.7e-282 975.7 1120 49.9
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 2.7e-282 975.7 1121 50.3
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 3.6e-282 975.3 1121 49.9
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 6.7e-281 971.1 1132 49.9
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 6.7e-281 971.1 1121 50.0
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 1.1e-280 970.3 1123 49.5
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 1.1e-280 970.3 1141 48.5
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 7.4e-280 967.6 1121 49.9
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 9.7e-280 967.2 1121 49.8
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 6.3e-279 964.5 1136 48.2
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 8.2e-279 964.1 1133 47.7
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 2.4e-278 962.6 1134 49.3
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 2.5e-275 952.6 1131 49.2
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 3.2e-275 952.2 1122 49.2
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 1.6e-274 949.9 1138 46.4
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 4.7e-274 948.3 1135 47.8
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 3.7e-271 938.7 1143 47.2
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 6.3e-271 937.9 1110 47.6
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 1.4e-270 936.8 1115 49.2
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 9.1e-270 934.1 1137 45.8
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 2.7e-269 932.6 1117 48.4
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 1.3e-268 930.2 1170 47.2
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 5.5e-267 924.9 1113 48.5
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 8.0e-266 921.0 1129 46.5
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 4.0e-265 918.7 1118 49.0
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 6.8e-265 917.9 1132 46.9
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 4.4e-264 915.2 1130 46.8
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 5.7e-264 914.8 1120 47.5
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 4.8e-263 911.8 1123 47.6
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 5.4e-262 908.3 1149 45.8
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 3.3e-259 899.0 1141 46.2
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 3.3e-259 899.0 1138 46.0
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 9.5e-259 897.5 1143 46.1
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 1.6e-258 896.7 1146 46.8
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 1.5e-256 890.2 1049 47.9
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 3.4e-256 889.0 1149 45.3
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 2.2e-255 886.3 1126 46.3
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 2.8e-255 885.9 1134 45.9
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 4.1e-254 882.1 1121 46.4
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 1.0e-252 877.5 1130 45.1
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 4.3e-251 872.1 1139 44.6
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 9.5e-251 870.9 1108 46.9
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 8.0e-250 867.8 1012 48.0
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 8.0e-250 867.8 1131 44.3
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 1.0e-249 867.5 1074 47.3
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 1.5e-248 863.6 1136 45.1
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 2.5e-243 846.3 1145 43.6
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 5.8e-240 835.1 1131 43.3
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 1.6e-237 827.0 1130 43.6
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 1.6e-237 827.0 1019 46.6
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 2.5e-235 819.7 1109 43.8
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 4.3e-235 818.9 1148 43.8
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 2.9e-231 806.2 1147 43.0
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-230 804.3 1140 42.6
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 2.6e-224 783.1 1172 42.0
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 3.9e-220 769.2 1123 42.4
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 5.1e-220 768.8 1105 42.3
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 2.6e-200 703.4 900 46.2
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 6.0e-197 692.2 1121 40.3
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 2.6e-184 650.2 774 47.5
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 2.5e-174 617.1 1111 36.5
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 3.9e-172 609.8 645 52.4
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 8.0e-165 585.5 656 49.5
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 2.0e-163 580.9 1204 33.7
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 8.5e-159 565.5 1147 35.5
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 4.2e-158 563.1 1221 33.3
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 2.3e-156 557.4 596 52.5
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 5.9e-152 542.7 641 47.9
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 1.4e-145 521.5 649 47.3
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 9.2e-145 518.8 658 45.4
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 2.8e-133 480.7 638 43.6
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 5.8e-131 473.0 564 49.8
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.7e-127 461.5 716 41.6
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 1.4e-124 451.8 560 47.9
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 1.5e-118 431.8 511 46.6
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 1.8e-116 424.9 469 51.4
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 1.3e-111 408.7 469 50.1
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 6.6e-103 379.8 447 49.4
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 5.5e-65 253.8 507 35.1
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-57 229.6 521 32.6
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 3.2e-57 228.0 700 32.7
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 1.3e-53 216.1 1584 22.3
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 8.2e-53 213.4 375 40.0
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 6.5e-50 203.8 462 30.3
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 2.6e-46 191.8 243 45.3
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 3.5e-43 181.4 527 28.7
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 6.5e-42 177.2 530 27.5
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 8.3e-37 160.2 206 42.2
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-35 156.0 463 27.2
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-33 149.1 635 25.4
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-33 149.1 635 25.4
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 2.5e-33 148.7 347 33.1
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 9.8e-30 136.7 164 41.5
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-28 133.3 175 41.1
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 1.4e-28 132.9 189 44.4
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 9.2e-28 130.2 207 41.5
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-27 129.4 150 46.7
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 5.9e-27 127.5 148 45.9
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 2.0e-22 112.5 91 54.9
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-19 103.2 120 45.8
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 8.6e-18 97.1 126 40.5
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 2.9e-13 82.0 51 68.6
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 2.9e-13 82.0 83 49.4
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 3.2e-12 78.6 58 60.3
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 7.0e-12 77.4 58 55.2
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 5.6e-09 67.8 130 37.7
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 1.2e-08 66.6 143 31.5
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 2.3e-07 62.4 173 27.2
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 2.3e-07 62.4 173 27.2
SHI47080 Sapria himalayana HOM05D004911 ORTHO05D005930 4.0e-07 61.6 80 38.8
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 3.4e-06 58.5 87 34.5


User provided reference genes

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