Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48907 Brassica carinata HOM05D007211 ORTHO05D009060 3.1e-86 322.0 190 100.0
BcaC09g48908 Brassica carinata HOM05D002228 ORTHO05D002347 3.0e-33 146.0 139 70.5
BcaC09g48905 Brassica carinata HOM05D007211 ORTHO05D009060 3.2e-27 125.9 63 100.0
BcaB04g20701 Brassica carinata HOM05D002228 ORTHO05D002347 4.2e-27 125.6 136 64.7
BcaC09g48902 Brassica carinata HOM05D007211 ORTHO05D009060 3.3e-24 115.9 58 100.0
C01p44620 Brassica napus HOM05D002228 ORTHO05D002347 2.9e-20 102.8 141 58.9
BcaC09g48910 Brassica carinata HOM05D002228 ORTHO05D002347 5.0e-20 102.1 141 58.9
BolC1t04430H Brassica oleracea HOM05D002228 ORTHO05D002347 5.0e-20 102.1 141 58.9
A01p35200 Brassica napus HOM05D002228 ORTHO05D002347 1.1e-19 100.9 139 59.7
BraA01t03601Z Brassica rapa HOM05D002228 ORTHO05D002347 1.1e-19 100.9 139 59.7
Carub.0003s1932 Capsella rubella HOM05D002228 ORTHO05D002347 1.9e-19 100.1 146 47.9
BcaC09g48904 Brassica carinata HOM05D007211 ORTHO05D009060 4.6e-18 95.5 46 100.0
A01p35210 Brassica napus HOM05D007211 ORTHO05D009060 4.6e-18 95.5 46 100.0
BraA01t03602Z Brassica rapa HOM05D007211 ORTHO05D009060 4.6e-18 95.5 46 100.0
BcaB06g26010 Brassica carinata HOM05D007211 ORTHO05D009060 1.0e-17 94.4 46 97.8
BcaC05g28470 Brassica carinata HOM05D007211 ORTHO05D009060 1.0e-17 94.4 46 97.8
A05p30110 Brassica napus HOM05D002228 ORTHO05D002347 1.0e-17 94.4 46 97.8
C01p44630 Brassica napus HOM05D007211 ORTHO05D009060 1.0e-17 94.4 46 97.8
C05p45540 Brassica napus HOM05D007211 ORTHO05D009060 1.0e-17 94.4 46 97.8
BolC1t04431H Brassica oleracea HOM05D007211 ORTHO05D009060 1.0e-17 94.4 46 97.8
BolC5t33279H Brassica oleracea HOM05D007211 ORTHO05D009060 1.0e-17 94.4 46 97.8
BraA05t21851Z Brassica rapa HOM05D002228 ORTHO05D002347 1.0e-17 94.4 46 97.8
Thhalv10022305m.g Eutrema salsugineum HOM05D002228 ORTHO05D002347 1.4e-17 94.0 153 50.3
Sp3g17560 Schrenkiella parvula HOM05D007211 ORTHO05D009060 3.0e-17 92.8 45 100.0
AL3G32910 Arabidopsis lyrata HOM05D007211 ORTHO05D009060 1.5e-16 90.5 54 87.0
CARHR094930 Cardamine hirsuta HOM05D007211 ORTHO05D009060 1.5e-16 90.5 54 87.0
AL3G32920 Arabidopsis lyrata HOM05D002228 ORTHO05D002347 3.3e-16 89.4 160 46.2
AT3G19508 Arabidopsis thaliana HOM05D007211 ORTHO05D009060 7.4e-16 88.2 54 83.3
Carub.0003s1931 Capsella rubella HOM05D007211 ORTHO05D009060 7.4e-16 88.2 54 85.2
Aa31LG8G6260 Aethionema arabicum HOM05D007211 ORTHO05D009060 8.2e-15 84.7 54 81.5
Manes.10G075811 Manihot esculenta HOM05D007211 ORTHO05D009060 1.5e-13 80.5 51 74.5
Manes.10G076037 Manihot esculenta HOM05D007211 ORTHO05D009060 1.5e-13 80.5 51 74.5
BolC5t33278H Brassica oleracea HOM05D002228 ORTHO05D002347 2.6e-13 79.7 155 45.8
CARHR094940 Cardamine hirsuta HOM05D002228 ORTHO05D002347 4.5e-13 79.0 144 45.1
GSVIVG01037902001 Vitis vinifera HOM05D007211 ORTHO05D009060 4.5e-13 79.0 59 66.1
Cpa.g.sc106.108 Carica papaya HOM05D007211 ORTHO05D009060 7.7e-13 78.2 72 58.3
MELO3C019551.2 Cucumis melo HOM05D007211 ORTHO05D009060 1.0e-12 77.8 51 72.5
QL11p032854 Quercus lobata HOM05D007211 ORTHO05D009060 1.0e-12 77.8 54 72.2
ClCG05G010330 Citrullus lanatus HOM05D007211 ORTHO05D009060 1.3e-12 77.4 51 70.6
Potri.001G299200 Populus trichocarpa HOM05D007211 ORTHO05D009060 1.3e-12 77.4 72 58.3
CANSAT25G1462 Cannabis sativa HOM05D007211 ORTHO05D009060 1.7e-12 77.0 51 68.6
CANSAT25G3598 Cannabis sativa HOM05D007211 ORTHO05D009060 1.7e-12 77.0 51 68.6
Rhsim11G0158600 Rhododendron simsii HOM05D007211 ORTHO05D009060 1.7e-12 77.0 71 59.2
Haze_10197 Corylus avellana HOM05D007211 ORTHO05D009060 2.9e-12 76.3 54 70.4
CsaV3_3G018160 Cucumis sativus L. HOM05D007211 ORTHO05D009060 3.8e-12 75.9 51 70.6
BcaC05g28469 Brassica carinata HOM05D002228 ORTHO05D002347 5.0e-12 75.5 152 45.4
C05p45530 Brassica napus HOM05D002228 ORTHO05D002347 5.0e-12 75.5 152 45.4
CiPaw.06G168700 Carya illinoinensis HOM05D007211 ORTHO05D009060 5.0e-12 75.5 44 79.5
Lsat_1_v5_gn_9_112060 Lactuca sativa HOM05D007211 ORTHO05D009060 5.0e-12 75.5 51 66.7
Rhsim11G0157000 Rhododendron simsii HOM05D007211 ORTHO05D009060 5.0e-12 75.5 59 64.4
Sabra16G0187800 Salix brachista HOM05D007211 ORTHO05D009060 6.5e-12 75.1 90 48.9
Migut.B00396 Erythranthe guttata HOM05D007211 ORTHO05D009060 8.5e-12 74.7 51 68.6
Oeu029529.1 Olea europaea HOM05D007211 ORTHO05D009060 8.5e-12 74.7 77 57.1
CSS0010427 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 1.1e-11 74.3 59 62.7
CSS0021869 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 1.1e-11 74.3 59 62.7
Nn1g04662 Nelumbo nucifera HOM05D007211 ORTHO05D009060 1.1e-11 74.3 51 66.7
Sed0014592 Sechium edule HOM05D007211 ORTHO05D009060 1.1e-11 74.3 51 64.7
HanXRQChr03g0068751 Helianthus annuus HOM05D007211 ORTHO05D009060 1.4e-11 73.9 51 66.7
DCAR_029091 Daucus carota HOM05D007211 ORTHO05D009060 1.9e-11 73.6 54 68.5
Hma1.2p1_1518F.1_g288450 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 1.9e-11 73.6 59 62.7
PSO541G5220 Papaver somniferum HOM05D007211 ORTHO05D009060 1.9e-11 73.6 54 68.5
Hund00155 Selenicereus undatus HOM05D000364 ORTHO05D009060 1.9e-11 73.6 51 64.7
Thecc.02G110400 Theobroma cacao HOM05D007211 ORTHO05D009060 1.9e-11 73.6 51 66.7
Atru.chr5.2471 Acer truncatum HOM05D007211 ORTHO05D009060 2.5e-11 73.2 80 51.2
Ciclev10029710m.g Citrus clementina HOM05D007211 ORTHO05D009060 2.5e-11 73.2 77 54.5
Oeu013758.1 Olea europaea HOM05D007211 ORTHO05D009060 2.5e-11 73.2 59 62.7
vmacro01995 Vaccinium macrocarpon HOM05D007211 ORTHO05D009060 2.5e-11 73.2 59 62.7
EL10Ac9g22259 Beta vulgaris HOM05D007211 ORTHO05D009060 3.2e-11 72.8 59 61.0
Sc14g0001880 Simmondsia chinensis HOM05D007211 ORTHO05D009060 3.2e-11 72.8 59 59.3
Actinidia34396 Actinidia chinensis HOM05D007211 ORTHO05D009060 4.2e-11 72.4 54 66.7
BcaB06g26011 Brassica carinata HOM05D002228 ORTHO05D002347 4.2e-11 72.4 113 49.6
Eucgr.I01095 Eucalyptus grandis HOM05D007211 ORTHO05D009060 4.2e-11 72.4 51 64.7
TAR376G0209 Trochodendron aralioides HOM05D007211 ORTHO05D009060 4.2e-11 72.4 51 64.7
unitig_0.g876 Utricularia gibba HOM05D007211 ORTHO05D009060 4.2e-11 72.4 65 56.9
Cc02_g19360 Coffea canephora HOM05D007211 ORTHO05D009060 5.5e-11 72.0 55 61.8
Duzib248G0207 Durio zibethinus HOM05D007211 ORTHO05D009060 5.5e-11 72.0 51 64.7
Prupe.8G136900 Prunus persica HOM05D007211 ORTHO05D009060 5.5e-11 72.0 51 64.7
Aqoxy6G02839 Aquilegia oxysepala HOM05D007211 ORTHO05D009060 7.2e-11 71.6 51 62.7
Potri.009G094200 Populus trichocarpa HOM05D007211 ORTHO05D009060 7.2e-11 71.6 45 73.3
Sabra09G0072500 Salix brachista HOM05D007211 ORTHO05D009060 7.2e-11 71.6 45 73.3
AUR62039062 Chenopodium quinoa HOM05D007211 ORTHO05D009060 9.4e-11 71.2 59 59.3
PGR142G3039 Punica granatum HOM05D007211 ORTHO05D009060 9.4e-11 71.2 44 75.0
TWI31G1006 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 9.4e-11 71.2 51 64.7
RcHm_v2.0_Chr6g0254661 Rosa chinensis HOM05D007211 ORTHO05D009060 1.2e-10 70.9 44 75.0
RcHm_v2.0_Chr6g0254711 Rosa chinensis HOM05D007211 ORTHO05D009060 1.2e-10 70.9 51 64.7
TWI79G1551 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 1.2e-10 70.9 51 62.7
Gohir.A13G044300 Gossypium hirsutum HOM05D007211 ORTHO05D009060 1.6e-10 70.5 51 62.7
Gohir.D13G043400 Gossypium hirsutum HOM05D007211 ORTHO05D009060 1.6e-10 70.5 51 62.7
Gorai.013G048100 Gossypium raimondii HOM05D007211 ORTHO05D009060 1.6e-10 70.5 70 52.9
MD00G1109400 Malus domestica HOM05D007211 ORTHO05D009060 1.6e-10 70.5 80 47.5
MD04G1005100 Malus domestica HOM05D007211 ORTHO05D009060 1.6e-10 70.5 80 47.5
AUR62010326 Chenopodium quinoa HOM05D007211 ORTHO05D009060 2.1e-10 70.1 51 62.7
Nitab4.5_0001480g0150 Nicotiana tabacum HOM05D007211 ORTHO05D009060 2.1e-10 70.1 54 64.8
Ca_24347_v3 Cicer arietinum L. HOM05D007211 ORTHO05D009060 2.7e-10 69.7 59 59.3
COL.COLO4_32576 Corchorus olitorius HOM05D007211 ORTHO05D009060 2.7e-10 69.7 51 62.7
Medtr5g004970 Medicago truncatula HOM05D007211 ORTHO05D009060 2.7e-10 69.7 59 59.3
Psat4g228560 Pisum sativum HOM05D007211 ORTHO05D009060 2.7e-10 69.7 59 59.3
TPR.G21608 Trifolium pratense HOM05D007211 ORTHO05D009060 2.7e-10 69.7 59 59.3
ECA240G2095 Erigeron canadensis HOM05D007211 ORTHO05D009060 3.6e-10 69.3 51 58.8
MBI16_g16358_MAGBIO Magnolia biondii HOM05D007211 ORTHO05D009060 3.6e-10 69.3 45 71.1
Nitab4.5_0004326g0030 Nicotiana tabacum HOM05D007211 ORTHO05D009060 3.6e-10 69.3 54 64.8
Sp3g17570 Schrenkiella parvula HOM05D002228 ORTHO05D002347 4.7e-10 68.9 128 44.5
Phvul.002G053100 Phaseolus vulgaris HOM05D007211 ORTHO05D009060 7.9e-10 68.2 44 75.0
CAN.G606.15 Capsicum annuum HOM05D007211 ORTHO05D009060 1.0e-09 67.8 54 63.0
FvH4_2g04840 Fragaria vesca HOM05D007211 ORTHO05D009060 1.0e-09 67.8 51 60.8
FAN15G0614 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.0e-09 67.8 51 60.8
FAN24G1282 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.0e-09 67.8 51 60.8
arahy.Tifrunner.gnm1.ann1.0PG00T Arachis hypogaea HOM05D007211 ORTHO05D009060 2.3e-09 66.6 55 58.2
arahy.Tifrunner.gnm1.ann1.YF4EPK Arachis hypogaea HOM05D007211 ORTHO05D009060 2.3e-09 66.6 55 58.2
arahy.Tifrunner.gnm1.ann1.UEWU3Q Arachis hypogaea HOM05D007211 ORTHO05D009060 3.0e-09 66.2 51 60.8
Sopen01g049710 Solanum pennellii HOM05D007211 ORTHO05D009060 3.0e-09 66.2 54 61.1
PGSC0003DMG400025763 Solanum tuberosum HOM05D007211 ORTHO05D009060 3.0e-09 66.2 54 61.1
Lj1g0022136 Lotus japonicus HOM05D007211 ORTHO05D009060 5.1e-09 65.5 55 56.4
Lalb_Chr09g0319591 Lupinus albus HOM05D007211 ORTHO05D009060 5.1e-09 65.5 43 74.4
Glyma.01G243800 Glycine max HOM05D007211 ORTHO05D009060 8.8e-09 64.7 40 75.0
FAN27G1079 Fragaria x ananassa HOM05D007211 ORTHO05D009060 1.1e-08 64.3 51 58.8
MD05G1023600 Malus domestica HOM05D007211 ORTHO05D009060 1.5e-08 63.9 51 54.9
MD10G1099000 Malus domestica HOM05D007211 ORTHO05D009060 2.6e-08 63.2 51 54.9
Os01g0342800 Oryza sativa ssp. japonica HOM05D007211 ORTHO05D009060 2.6e-08 63.2 40 72.5
Aa31LG8G6270 Aethionema arabicum HOM05D002228 ORTHO05D002347 3.3e-08 62.8 57 61.4
CDE07G1397 Ceratophyllum demersum HOM05D007211 ORTHO05D009060 7.4e-08 61.6 54 63.0
AT3G19510 Arabidopsis thaliana HOM05D002228 ORTHO05D002347 1.7e-07 60.5 143 37.1
Duzib248G0756 Durio zibethinus HOM05D007211 ORTHO05D009060 2.2e-07 60.1 40 72.5
Zm00001eb307960 Zea mays HOM05D007211 ORTHO05D009060 2.2e-07 60.1 36 75.0
AagrBONN_evm.TU.Sc2ySwM_362.2090 Anthoceros agrestis HOM05D007211 ORTHO05D009060 7.0e-06 55.1 39 64.1


User provided reference genes

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