Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48902 Brassica carinata HOM05D007211 ORTHO05D009060 7.2e-53 210.3 106 100.0
BcaB04g20701 Brassica carinata HOM05D002228 ORTHO05D002347 1.8e-40 169.1 106 84.9
BcaC09g48905 Brassica carinata HOM05D007211 ORTHO05D009060 2.0e-34 149.1 106 79.2
BcaC09g48904 Brassica carinata HOM05D007211 ORTHO05D009060 2.2e-25 119.0 107 64.5
A01p35210 Brassica napus HOM05D007211 ORTHO05D009060 2.2e-25 119.0 107 64.5
BraA01t03602Z Brassica rapa HOM05D007211 ORTHO05D009060 2.2e-25 119.0 107 64.5
BcaC09g48910 Brassica carinata HOM05D002228 ORTHO05D002347 4.9e-25 117.9 107 63.6
C01p44630 Brassica napus HOM05D007211 ORTHO05D009060 4.9e-25 117.9 107 63.6
BolC1t04431H Brassica oleracea HOM05D007211 ORTHO05D009060 4.9e-25 117.9 107 63.6
Sp3g17560 Schrenkiella parvula HOM05D007211 ORTHO05D009060 6.4e-25 117.5 111 64.0
A05p30110 Brassica napus HOM05D002228 ORTHO05D002347 8.3e-25 117.1 107 62.6
C05p45540 Brassica napus HOM05D007211 ORTHO05D009060 8.3e-25 117.1 107 62.6
BraA05t21851Z Brassica rapa HOM05D002228 ORTHO05D002347 8.3e-25 117.1 107 62.6
BcaC05g28470 Brassica carinata HOM05D007211 ORTHO05D009060 1.4e-24 116.3 107 61.7
BcaC09g48907 Brassica carinata HOM05D007211 ORTHO05D009060 1.4e-24 116.3 58 100.0
BolC5t33279H Brassica oleracea HOM05D007211 ORTHO05D009060 1.4e-24 116.3 107 61.7
CARHR094930 Cardamine hirsuta HOM05D007211 ORTHO05D009060 2.4e-24 115.5 111 63.1
BcaB06g26010 Brassica carinata HOM05D007211 ORTHO05D009060 5.4e-24 114.4 107 61.7
Carub.0003s1931 Capsella rubella HOM05D007211 ORTHO05D009060 9.2e-24 113.6 111 62.2
AL3G32910 Arabidopsis lyrata HOM05D007211 ORTHO05D009060 2.7e-23 112.1 111 61.3
Aa31LG8G6260 Aethionema arabicum HOM05D007211 ORTHO05D009060 1.3e-22 109.8 111 60.4
AT3G19508 Arabidopsis thaliana HOM05D007211 ORTHO05D009060 1.3e-22 109.8 111 59.5
Manes.10G075811 Manihot esculenta HOM05D007211 ORTHO05D009060 9.8e-18 93.6 105 49.5
Manes.10G076037 Manihot esculenta HOM05D007211 ORTHO05D009060 9.8e-18 93.6 105 49.5
GSVIVG01037902001 Vitis vinifera HOM05D007211 ORTHO05D009060 9.8e-18 93.6 105 49.5
Cpa.g.sc106.108 Carica papaya HOM05D007211 ORTHO05D009060 1.3e-17 93.2 108 47.2
MELO3C019551.2 Cucumis melo HOM05D007211 ORTHO05D009060 3.7e-17 91.7 108 49.1
ClCG05G010330 Citrullus lanatus HOM05D007211 ORTHO05D009060 1.1e-16 90.1 108 47.2
Migut.B00396 Erythranthe guttata HOM05D007211 ORTHO05D009060 1.1e-16 90.1 105 48.6
Potri.001G299200 Populus trichocarpa HOM05D007211 ORTHO05D009060 1.1e-16 90.1 105 48.6
CSS0010427 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 1.4e-16 89.7 108 49.1
CSS0021869 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 1.4e-16 89.7 108 49.1
Oeu013758.1 Olea europaea HOM05D007211 ORTHO05D009060 1.4e-16 89.7 108 49.1
QL11p032854 Quercus lobata HOM05D007211 ORTHO05D009060 1.4e-16 89.7 109 47.7
vmacro01995 Vaccinium macrocarpon HOM05D007211 ORTHO05D009060 1.4e-16 89.7 108 49.1
Haze_10197 Corylus avellana HOM05D007211 ORTHO05D009060 1.9e-16 89.4 109 46.8
CsaV3_3G018160 Cucumis sativus L. HOM05D007211 ORTHO05D009060 1.9e-16 89.4 106 48.1
Rhsim11G0158600 Rhododendron simsii HOM05D007211 ORTHO05D009060 1.9e-16 89.4 105 48.6
TWI31G1006 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 1.9e-16 89.4 108 48.1
Duzib248G0207 Durio zibethinus HOM05D007211 ORTHO05D009060 3.2e-16 88.6 107 45.8
Gohir.A13G044300 Gossypium hirsutum HOM05D007211 ORTHO05D009060 3.2e-16 88.6 106 46.2
Lsat_1_v5_gn_9_112060 Lactuca sativa HOM05D007211 ORTHO05D009060 3.2e-16 88.6 105 45.7
Hma1.2p1_1518F.1_g288450 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 4.1e-16 88.2 108 48.1
Hund00155 Selenicereus undatus HOM05D000364 ORTHO05D009060 4.1e-16 88.2 105 44.8
Sc14g0001880 Simmondsia chinensis HOM05D007211 ORTHO05D009060 5.4e-16 87.8 105 45.7
Actinidia34396 Actinidia chinensis HOM05D007211 ORTHO05D009060 9.2e-16 87.0 108 47.2
CANSAT25G1462 Cannabis sativa HOM05D007211 ORTHO05D009060 9.2e-16 87.0 108 42.6
CANSAT25G3598 Cannabis sativa HOM05D007211 ORTHO05D009060 9.2e-16 87.0 108 42.6
Oeu029529.1 Olea europaea HOM05D007211 ORTHO05D009060 9.2e-16 87.0 108 49.1
PSO541G5220 Papaver somniferum HOM05D007211 ORTHO05D009060 9.2e-16 87.0 108 47.2
Rhsim11G0157000 Rhododendron simsii HOM05D007211 ORTHO05D009060 9.2e-16 87.0 105 47.6
TWI79G1551 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 9.2e-16 87.0 105 45.7
CiPaw.06G168700 Carya illinoinensis HOM05D007211 ORTHO05D009060 1.2e-15 86.7 105 45.7
COL.COLO4_32576 Corchorus olitorius HOM05D007211 ORTHO05D009060 1.2e-15 86.7 106 44.3
EL10Ac9g22259 Beta vulgaris HOM05D007211 ORTHO05D009060 1.6e-15 86.3 105 44.8
Thecc.02G110400 Theobroma cacao HOM05D007211 ORTHO05D009060 1.6e-15 86.3 105 45.7
Atru.chr5.2471 Acer truncatum HOM05D007211 ORTHO05D009060 2.1e-15 85.9 105 44.8
HanXRQChr03g0068751 Helianthus annuus HOM05D007211 ORTHO05D009060 2.1e-15 85.9 105 44.8
Nn1g04662 Nelumbo nucifera HOM05D007211 ORTHO05D009060 2.1e-15 85.9 105 44.8
Potri.009G094200 Populus trichocarpa HOM05D007211 ORTHO05D009060 2.1e-15 85.9 105 46.7
Sabra09G0072500 Salix brachista HOM05D007211 ORTHO05D009060 2.1e-15 85.9 105 46.7
RcHm_v2.0_Chr6g0254661 Rosa chinensis HOM05D007211 ORTHO05D009060 2.7e-15 85.5 103 49.5
ECA240G2095 Erigeron canadensis HOM05D007211 ORTHO05D009060 3.5e-15 85.1 103 46.6
Gohir.D13G043400 Gossypium hirsutum HOM05D007211 ORTHO05D009060 3.5e-15 85.1 105 44.8
Psat4g228560 Pisum sativum HOM05D007211 ORTHO05D009060 3.5e-15 85.1 105 46.7
RcHm_v2.0_Chr6g0254711 Rosa chinensis HOM05D007211 ORTHO05D009060 3.5e-15 85.1 103 49.5
Sed0014592 Sechium edule HOM05D007211 ORTHO05D009060 4.6e-15 84.7 105 43.8
unitig_0.g876 Utricularia gibba HOM05D007211 ORTHO05D009060 4.6e-15 84.7 105 47.6
DCAR_029091 Daucus carota HOM05D007211 ORTHO05D009060 6.0e-15 84.3 108 46.3
Gorai.013G048100 Gossypium raimondii HOM05D007211 ORTHO05D009060 6.0e-15 84.3 105 44.8
MD00G1109400 Malus domestica HOM05D007211 ORTHO05D009060 6.0e-15 84.3 108 43.5
MD04G1005100 Malus domestica HOM05D007211 ORTHO05D009060 6.0e-15 84.3 108 43.5
PGR142G3039 Punica granatum HOM05D007211 ORTHO05D009060 6.0e-15 84.3 108 44.4
Sabra16G0187800 Salix brachista HOM05D007211 ORTHO05D009060 6.0e-15 84.3 127 44.9
Cc02_g19360 Coffea canephora HOM05D007211 ORTHO05D009060 7.8e-15 84.0 105 43.8
Eucgr.I01095 Eucalyptus grandis HOM05D007211 ORTHO05D009060 7.8e-15 84.0 105 43.8
FAN15G0614 Fragaria x ananassa HOM05D000062 ORTHO05D000043 7.8e-15 84.0 105 48.6
Prupe.8G136900 Prunus persica HOM05D007211 ORTHO05D009060 7.8e-15 84.0 105 44.8
Ca_24347_v3 Cicer arietinum L. HOM05D007211 ORTHO05D009060 1.0e-14 83.6 105 46.7
TPR.G21608 Trifolium pratense HOM05D007211 ORTHO05D009060 1.0e-14 83.6 105 46.7
Aqoxy6G02839 Aquilegia oxysepala HOM05D007211 ORTHO05D009060 1.3e-14 83.2 108 43.5
Ciclev10029710m.g Citrus clementina HOM05D007211 ORTHO05D009060 1.3e-14 83.2 105 43.8
FvH4_2g04840 Fragaria vesca HOM05D007211 ORTHO05D009060 1.3e-14 83.2 106 48.1
TAR376G0209 Trochodendron aralioides HOM05D007211 ORTHO05D009060 1.3e-14 83.2 105 43.8
FAN24G1282 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.7e-14 82.8 103 48.5
Medtr5g004970 Medicago truncatula HOM05D007211 ORTHO05D009060 3.0e-14 82.0 105 45.7
Nitab4.5_0001480g0150 Nicotiana tabacum HOM05D007211 ORTHO05D009060 3.0e-14 82.0 105 43.8
AUR62039062 Chenopodium quinoa HOM05D007211 ORTHO05D009060 3.9e-14 81.6 105 42.9
PGSC0003DMG400025763 Solanum tuberosum HOM05D007211 ORTHO05D009060 8.6e-14 80.5 108 42.6
AUR62010326 Chenopodium quinoa HOM05D007211 ORTHO05D009060 1.5e-13 79.7 105 41.9
FAN27G1079 Fragaria x ananassa HOM05D007211 ORTHO05D009060 1.9e-13 79.3 103 47.6
Sopen01g049710 Solanum pennellii HOM05D007211 ORTHO05D009060 1.9e-13 79.3 108 41.7
arahy.Tifrunner.gnm1.ann1.0PG00T Arachis hypogaea HOM05D007211 ORTHO05D009060 4.3e-13 78.2 105 41.9
arahy.Tifrunner.gnm1.ann1.YF4EPK Arachis hypogaea HOM05D007211 ORTHO05D009060 4.3e-13 78.2 105 41.9
Lj1g0022136 Lotus japonicus HOM05D007211 ORTHO05D009060 4.3e-13 78.2 105 42.9
arahy.Tifrunner.gnm1.ann1.UEWU3Q Arachis hypogaea HOM05D007211 ORTHO05D009060 7.3e-13 77.4 105 41.9
Lalb_Chr09g0319591 Lupinus albus HOM05D007211 ORTHO05D009060 6.2e-12 74.3 105 44.8
Phvul.002G053100 Phaseolus vulgaris HOM05D007211 ORTHO05D009060 6.2e-12 74.3 103 46.6
Glyma.01G243800 Glycine max HOM05D007211 ORTHO05D009060 8.1e-12 73.9 105 44.8
Nitab4.5_0004326g0030 Nicotiana tabacum HOM05D007211 ORTHO05D009060 8.1e-12 73.9 71 53.5
CAN.G606.15 Capsicum annuum HOM05D007211 ORTHO05D009060 1.8e-11 72.8 65 55.4
MD05G1023600 Malus domestica HOM05D007211 ORTHO05D009060 3.1e-11 72.0 105 38.1
MBI16_g16358_MAGBIO Magnolia biondii HOM05D007211 ORTHO05D009060 2.0e-10 69.3 45 71.1
CDE07G1397 Ceratophyllum demersum HOM05D007211 ORTHO05D009060 5.8e-10 67.8 69 56.5
MD10G1099000 Malus domestica HOM05D007211 ORTHO05D009060 5.8e-10 67.8 67 47.8
Os01g0342800 Oryza sativa ssp. japonica HOM05D007211 ORTHO05D009060 7.6e-10 67.4 65 53.8
Cfa004601 Carpinus fangiana HOM05D007211 ORTHO05D009060 2.2e-09 65.9 107 37.4
Zm00001eb307960 Zea mays HOM05D007211 ORTHO05D009060 2.9e-09 65.5 60 53.3
Duzib248G0756 Durio zibethinus HOM05D007211 ORTHO05D009060 1.2e-07 60.1 40 72.5
AagrBONN_evm.TU.Sc2ySwM_362.2090 Anthoceros agrestis HOM05D007211 ORTHO05D009060 1.6e-07 59.7 64 46.9
AagrBONN_evm.TU.Sc2ySwM_362.1547 Anthoceros agrestis HOM05D007211 ORTHO05D009060 4.6e-07 58.2 64 46.9


User provided reference genes

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