Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 5.7e-65 250.8 126 100.0
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 5.7e-65 250.8 126 100.0
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 5.7e-65 250.8 126 100.0
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 4.7e-43 177.9 98 91.8
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 4.7e-43 177.9 98 91.8
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 4.7e-43 177.9 98 91.8
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 1.1e-42 176.8 95 92.6
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 1.1e-42 176.8 95 92.6
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 1.1e-42 176.8 95 92.6
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 1.4e-42 176.4 98 89.8
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 1.4e-42 176.4 98 89.8
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 1.4e-42 176.4 98 89.8
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 4.0e-42 174.9 95 91.6
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 4.0e-42 174.9 95 91.6
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 2.0e-41 172.6 95 90.5
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 2.6e-41 172.2 98 87.8
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 4.4e-41 171.4 95 89.5
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 5.8e-41 171.0 98 86.7
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 1.3e-40 169.9 98 85.7
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 1.3e-40 169.9 98 85.7
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 1.1e-39 166.8 98 84.7
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 1.4e-39 166.4 96 83.3
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 3.6e-35 151.8 94 79.8
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 8.1e-35 150.6 102 73.5
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 1.5e-33 146.4 98 77.6
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 3.4e-33 145.2 98 72.4
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 5.8e-33 144.4 102 68.6
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 1.7e-32 142.9 95 78.9
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 3.7e-32 141.7 98 69.4
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 4.9e-32 141.4 106 65.1
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 8.4e-32 140.6 104 66.3
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 1.1e-31 140.2 94 75.5
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 1.4e-31 139.8 94 73.4
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 1.9e-31 139.4 106 64.2
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 2.4e-31 139.0 98 71.4
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 2.4e-31 139.0 98 70.4
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 2.4e-31 139.0 99 69.7
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 2.4e-31 139.0 113 63.7
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 2.4e-31 139.0 113 63.7
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 3.2e-31 138.7 112 63.4
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 3.2e-31 138.7 104 65.4
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 4.1e-31 138.3 99 71.7
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 7.1e-31 137.5 102 65.7
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 7.1e-31 137.5 118 62.7
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 7.1e-31 137.5 98 67.3
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 1.2e-30 136.7 99 69.7
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 1.2e-30 136.7 98 67.3
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 1.2e-30 136.7 98 67.3
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 1.6e-30 136.3 99 69.7
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 1.6e-30 136.3 129 59.7
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 1.6e-30 136.3 114 64.0
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 1.6e-30 136.3 99 72.7
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 1.6e-30 136.3 93 71.0
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 1.6e-30 136.3 97 66.0
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 2.1e-30 136.0 112 60.7
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 2.1e-30 136.0 98 68.4
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 2.1e-30 136.0 99 67.7
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 2.7e-30 135.6 105 66.7
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 3.5e-30 135.2 94 69.1
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 3.5e-30 135.2 129 57.4
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 3.5e-30 135.2 98 66.3
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 3.5e-30 135.2 109 65.1
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 3.5e-30 135.2 98 68.4
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 4.6e-30 134.8 129 57.4
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 4.6e-30 134.8 98 67.3
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 4.6e-30 134.8 98 67.3
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 4.6e-30 134.8 98 67.3
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 6.0e-30 134.4 98 67.3
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 7.8e-30 134.0 123 60.2
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 1.0e-29 133.7 114 59.6
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 1.0e-29 133.7 99 71.7
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 1.0e-29 133.7 93 69.9
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 1.3e-29 133.3 94 68.1
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 1.3e-29 133.3 129 56.6
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 1.3e-29 133.3 94 68.1
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 1.3e-29 133.3 94 70.2
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 1.7e-29 132.9 114 61.4
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.7e-29 132.9 114 61.4
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.7e-29 132.9 114 61.4
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 3.9e-29 131.7 99 66.7
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 6.6e-29 131.0 99 65.7
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 8.6e-29 130.6 100 64.0
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 1.1e-28 130.2 114 56.1
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.1e-28 130.2 114 60.5
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.1e-28 130.2 114 60.5
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.1e-28 130.2 114 60.5
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 1.5e-28 129.8 107 62.6
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 1.9e-28 129.4 98 64.3
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 2.5e-28 129.0 99 65.7
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 4.3e-28 128.3 106 61.3
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 4.3e-28 128.3 98 63.3
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 2.8e-27 125.6 99 65.7
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 2.8e-27 125.6 99 65.7
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 2.0e-25 119.4 94 61.7
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 2.0e-25 119.4 137 51.1
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 3.4e-25 118.6 144 47.2
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 4.4e-25 118.2 94 60.6
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 5.8e-25 117.9 93 61.3
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 5.8e-25 117.9 93 61.3
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 7.6e-25 117.5 84 66.7
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 7.6e-25 117.5 105 56.2
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 3.8e-24 115.2 95 57.9
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 8.4e-24 114.0 95 60.0
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 1.1e-23 113.6 88 62.5
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 1.4e-23 113.2 145 46.9
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 3.2e-23 112.1 147 44.2
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 7.1e-23 110.9 96 55.2
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 6.0e-22 107.8 107 51.4
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 8.7e-21 104.0 107 49.5
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 3.3e-20 102.1 92 56.5
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 9.6e-20 100.5 92 55.4
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.2e-19 97.8 81 58.0
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 6.2e-19 97.8 107 48.6
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 8.1e-19 97.4 100 49.0
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 8.1e-19 97.4 62 69.4
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 8.1e-19 97.4 71 76.1
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 6.4e-16 87.8 82 43.9
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 6.6e-13 77.8 61 57.4
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 6.6e-13 77.8 61 57.4
A05p27070 Brassica napus HOM05D005829 ORTHO05D007246 8.7e-13 77.4 66 63.6
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 8.7e-13 77.4 61 65.6
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 8.7e-13 77.4 61 65.6
BolC2t09172H Brassica oleracea HOM05D000194 ORTHO05D007246 1.5e-12 76.6 73 67.1
BcaC03g15457 Brassica carinata HOM05D000194 ORTHO05D000069 3.3e-12 75.5 61 77.0
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 9.0e-10 67.4 40 70.0
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 8.4e-08 60.8 74 44.6
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 1.9e-07 59.7 35 71.4
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 3.2e-07 58.9 58 55.2
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 7.1e-07 57.8 108 36.1
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 6.0e-06 54.7 39 61.5


User provided reference genes

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