Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48848 Brassica carinata HOM05D023491 ORTHO05D021841 1.1e-45 186.8 135 100.0
A03p65740 Brassica napus HOM05D002901 ORTHO05D021841 1.3e-27 126.7 134 56.7
BraA03t15625Z Brassica rapa HOM05D002901 ORTHO05D021841 1.3e-27 126.7 134 56.7
C09p33990 Brassica napus HOM05D023491 ORTHO05D027551 2.9e-14 82.4 116 56.0
BolC1t04501H Brassica oleracea HOM05D023491 ORTHO05D021841 1.9e-13 79.7 43 90.7
Thhalv10001406m.g Eutrema salsugineum HOM05D002901 ORTHO05D003183 1.0e-11 73.9 40 87.5
BcaC09g50603 Brassica carinata HOM05D002901 ORTHO05D021841 3.0e-11 72.4 38 94.7
AL4G42900 Arabidopsis lyrata HOM05D002901 ORTHO05D003183 5.1e-11 71.6 40 85.0
AT2G44020 Arabidopsis thaliana HOM05D002901 ORTHO05D003183 5.1e-11 71.6 40 85.0
BcaB02g08924 Brassica carinata HOM05D002901 ORTHO05D003183 5.1e-11 71.6 40 85.0
BcaC02g12344 Brassica carinata HOM05D002901 ORTHO05D003183 5.1e-11 71.6 40 85.0
A05p04170 Brassica napus HOM05D002901 ORTHO05D003183 5.1e-11 71.6 40 85.0
C04p04940 Brassica napus HOM05D002901 ORTHO05D003183 5.1e-11 71.6 40 85.0
BolC4t22125H Brassica oleracea HOM05D002901 ORTHO05D003183 5.1e-11 71.6 40 85.0
BraA05t19403Z Brassica rapa HOM05D002901 ORTHO05D003183 5.1e-11 71.6 40 85.0
CARHR139180 Cardamine hirsuta HOM05D002901 ORTHO05D003183 5.1e-11 71.6 40 85.0
Sp4g26110 Schrenkiella parvula HOM05D002901 ORTHO05D003183 5.1e-11 71.6 40 85.0
Aa31LG1G25700 Aethionema arabicum HOM05D002901 ORTHO05D003183 6.7e-11 71.2 40 82.5
Carub.0004s2658 Capsella rubella HOM05D002901 ORTHO05D003183 6.7e-11 71.2 40 82.5
TPR.G34335 Trifolium pratense HOM05D002901 ORTHO05D003183 4.3e-10 68.6 162 53.7
Lj4g0013449 Lotus japonicus HOM05D002901 ORTHO05D003183 5.6e-10 68.2 40 82.5
THA.LOC104804390 Tarenaya hassleriana HOM05D002901 ORTHO05D003183 5.6e-10 68.2 40 80.0
unitig_37.g11912 Utricularia gibba HOM05D002901 ORTHO05D003183 5.6e-10 68.2 161 51.6
BcaC04g21239 Brassica carinata HOM05D023491 ORTHO05D027551 9.6e-10 67.4 82 50.0
Prupe.8G049300 Prunus persica HOM05D002901 ORTHO05D003183 2.1e-09 66.2 40 75.0
Atru.chr13.1879 Acer truncatum HOM05D002901 ORTHO05D003183 2.8e-09 65.9 40 75.0
arahy.Tifrunner.gnm1.ann1.HA7VEA Arachis hypogaea HOM05D001631 ORTHO05D003183 2.8e-09 65.9 40 77.5
arahy.Tifrunner.gnm1.ann1.IVXM4E Arachis hypogaea HOM05D002901 ORTHO05D003183 2.8e-09 65.9 40 77.5
Gohir.A02G108506 Gossypium hirsutum HOM05D002901 ORTHO05D003183 2.8e-09 65.9 40 65.0
Gohir.A02G108507 Gossypium hirsutum HOM05D002901 ORTHO05D003183 2.8e-09 65.9 40 65.0
Gohir.D03G069704 Gossypium hirsutum HOM05D002901 ORTHO05D003183 2.8e-09 65.9 40 65.0
Gorai.003G090600 Gossypium raimondii HOM05D002901 ORTHO05D003183 2.8e-09 65.9 40 65.0
Medtr1g115415 Medicago truncatula HOM05D002901 ORTHO05D003183 2.8e-09 65.9 40 77.5
Cpa.g.sc151.12 Carica papaya HOM05D002901 ORTHO05D003183 3.7e-09 65.5 37 78.4
Phvul.002G321600 Phaseolus vulgaris HOM05D002901 ORTHO05D003183 3.7e-09 65.5 40 75.0
Glyma.05G239200 Glycine max HOM05D002901 ORTHO05D003183 4.8e-09 65.1 40 75.0
Glyma.08G046300 Glycine max HOM05D002901 ORTHO05D003183 4.8e-09 65.1 40 75.0
Lalb_Chr05g0222181 Lupinus albus HOM05D002901 ORTHO05D003183 6.2e-09 64.7 40 75.0
TWI79G0180 Tripterygium wilfordii HOM05D002901 ORTHO05D003183 6.2e-09 64.7 40 75.0
Aqoxy1G00295 Aquilegia oxysepala HOM05D002901 ORTHO05D003183 8.2e-09 64.3 40 70.0
ECA234G1179 Erigeron canadensis HOM05D000093 ORTHO05D001309 8.2e-09 64.3 40 72.5
Eucgr.F02687 Eucalyptus grandis HOM05D002901 ORTHO05D003183 8.2e-09 64.3 40 72.5
Psat7g007760 Pisum sativum HOM05D002901 ORTHO05D003183 8.2e-09 64.3 40 72.5
VMungo0251G0115 Vigna mungo HOM05D002901 ORTHO05D003183 8.2e-09 64.3 40 72.5
CANSAT25G1264 Cannabis sativa HOM05D002901 ORTHO05D003183 1.1e-08 63.9 40 67.5
Lsat_1_v5_gn_4_41901 Lactuca sativa HOM05D002901 ORTHO05D003183 1.1e-08 63.9 40 70.0
Sc08g0007760 Simmondsia chinensis HOM05D002901 ORTHO05D003183 1.1e-08 63.9 43 69.8
TAR376G0603 Trochodendron aralioides HOM05D002901 ORTHO05D003183 1.1e-08 63.9 40 67.5
CSS0006169 Camellia sinensis var. sinensis HOM05D002901 ORTHO05D003183 1.4e-08 63.5 40 67.5
Migut.N01700 Erythranthe guttata HOM05D002901 ORTHO05D003183 1.4e-08 63.5 40 70.0
FvH4_1g27270 Fragaria vesca HOM05D002901 ORTHO05D003183 1.4e-08 63.5 39 71.8
FvH4_1g27350 Fragaria vesca HOM05D002901 ORTHO05D003183 1.4e-08 63.5 39 71.8
FAN19G2769 Fragaria x ananassa HOM05D002901 ORTHO05D003183 1.4e-08 63.5 39 71.8
FAN19G2893 Fragaria x ananassa HOM05D002901 ORTHO05D003183 1.4e-08 63.5 39 71.8
FAN23G2662 Fragaria x ananassa HOM05D002901 ORTHO05D003183 1.4e-08 63.5 39 71.8
FAN26G1081 Fragaria x ananassa HOM05D002901 ORTHO05D003183 1.4e-08 63.5 39 71.8
MD07G1031000 Malus domestica HOM05D002901 ORTHO05D003183 1.4e-08 63.5 40 75.0
Rhsim04G0038200 Rhododendron simsii HOM05D002901 ORTHO05D003183 1.4e-08 63.5 40 67.5
Rhsim06G0087300 Rhododendron simsii HOM05D002901 ORTHO05D003183 1.4e-08 63.5 40 67.5
SGA_v2.0_scaffold95G28735 Striga asiatica HOM05D002901 ORTHO05D003183 1.4e-08 63.5 40 70.0
Lalb_Chr16g0387491 Lupinus albus HOM05D002901 ORTHO05D003183 1.8e-08 63.2 40 72.5
Oeu037405.1 Olea europaea HOM05D002901 ORTHO05D003183 1.8e-08 63.2 40 67.5
RcHm_v2.0_Chr3g0488701 Rosa chinensis HOM05D002901 ORTHO05D003183 1.8e-08 63.2 39 71.8
CSS0013111 Camellia sinensis var. sinensis HOM05D002901 ORTHO05D003183 2.4e-08 62.8 40 67.5
CAN.G492.42 Capsicum annuum HOM05D002901 ORTHO05D003183 2.4e-08 62.8 40 67.5
Cfa018219 Carpinus fangiana HOM05D002901 ORTHO05D003183 2.4e-08 62.8 40 67.5
CiPaw.16G005800 Carya illinoinensis HOM05D002901 ORTHO05D003183 2.4e-08 62.8 40 67.5
Cc05_g00150 Coffea canephora HOM05D002901 ORTHO05D003183 2.4e-08 62.8 40 65.0
MBI02_g13010_MAGBIO Magnolia biondii HOM05D002901 ORTHO05D003183 2.4e-08 62.8 40 67.5
Peaxi162Scf00476g00615 Petunia axillaris HOM05D002901 ORTHO05D003183 2.4e-08 62.8 40 67.5
QL07p030484 Quercus lobata HOM05D002901 ORTHO05D003183 2.4e-08 62.8 40 67.5
QL07p031555 Quercus lobata HOM05D002901 ORTHO05D003183 2.4e-08 62.8 40 67.5
Solyc11g017050.1 Solanum lycopersicum HOM05D002901 ORTHO05D003183 2.4e-08 62.8 40 67.5
Sopen11g009040 Solanum pennellii HOM05D002901 ORTHO05D003183 2.4e-08 62.8 40 67.5
PGSC0003DMG400009215 Solanum tuberosum HOM05D002901 ORTHO05D003183 2.4e-08 62.8 40 67.5
COL.COLO4_13997 Corchorus olitorius HOM05D002901 ORTHO05D003183 3.1e-08 62.4 40 67.5
Nitab4.5_0004159g0060 Nicotiana tabacum HOM05D002901 ORTHO05D003183 3.1e-08 62.4 40 65.0
Nitab4.5_0006035g0020 Nicotiana tabacum HOM05D002901 ORTHO05D003183 3.1e-08 62.4 40 65.0
PGR042G2939 Punica granatum HOM05D002901 ORTHO05D003183 3.1e-08 62.4 40 70.0
Actinidia15630 Actinidia chinensis HOM05D002901 ORTHO05D003183 4.0e-08 62.0 40 65.0
Actinidia26527 Actinidia chinensis HOM05D002901 ORTHO05D003183 4.0e-08 62.0 40 65.0
ATR0564G477 Amborella trichopoda HOM05D002901 ORTHO05D003183 4.0e-08 62.0 40 70.0
Haze_17884 Corylus avellana HOM05D002901 ORTHO05D003183 4.0e-08 62.0 40 67.5
MELO3C026620.2 Cucumis melo HOM05D002901 ORTHO05D003183 4.0e-08 62.0 44 63.6
GSVIVG01015207001 Vitis vinifera HOM05D002901 ORTHO05D003183 4.0e-08 62.0 40 65.0
Dinv13070 Davidia involucrata HOM05D002901 ORTHO05D003183 5.3e-08 61.6 40 65.0
ECA248G1159 Erigeron canadensis HOM05D002901 ORTHO05D003183 5.3e-08 61.6 40 67.5
HanXRQChr09g0245761 Helianthus annuus HOM05D002901 ORTHO05D003183 5.3e-08 61.6 40 67.5
Manes.02G188300 Manihot esculenta HOM05D002901 ORTHO05D003183 5.3e-08 61.6 40 65.0
Sabra13G0098800 Salix brachista HOM05D002901 ORTHO05D003183 5.3e-08 61.6 39 69.2
Thecc.01G124400 Theobroma cacao HOM05D002901 ORTHO05D003183 5.3e-08 61.6 40 65.0
Ca_17273_v3 Cicer arietinum L. HOM05D002901 ORTHO05D003183 6.9e-08 61.2 37 78.4
Dinv44719 Davidia involucrata HOM05D002901 ORTHO05D003183 6.9e-08 61.2 40 62.5
FAN28G2937 Fragaria x ananassa HOM05D002901 ORTHO05D003183 6.9e-08 61.2 39 69.2
Medtr8g105560 Medicago truncatula HOM05D002901 ORTHO05D003183 6.9e-08 61.2 162 51.9
MSTRG.14895 Avicennia marina HOM05D002901 ORTHO05D003183 9.0e-08 60.8 40 65.0
Ciclev10000930m.g Citrus clementina HOM05D002901 ORTHO05D003183 9.0e-08 60.8 40 72.5
MD02G1295200 Malus domestica HOM05D000002 ORTHO05D000001 9.0e-08 60.8 41 68.3
C01p45250 Brassica napus HOM05D023491 ORTHO05D021841 1.2e-07 60.5 30 96.7
CDE01G0187 Ceratophyllum demersum HOM05D002901 ORTHO05D003183 1.2e-07 60.5 39 61.5
Duzib147G0362 Durio zibethinus HOM05D002901 ORTHO05D003183 1.2e-07 60.5 40 65.0
Peaxi162Scf00901g00035 Petunia axillaris HOM05D002901 ORTHO05D003183 1.2e-07 60.5 40 62.5
CDE12G0394 Ceratophyllum demersum HOM05D002901 ORTHO05D003183 1.5e-07 60.1 40 65.0
AUR62022324 Chenopodium quinoa HOM05D002901 ORTHO05D003183 1.5e-07 60.1 39 66.7
AUR62034384 Chenopodium quinoa HOM05D002901 ORTHO05D003183 1.5e-07 60.1 39 66.7
CsaV3_3G043110 Cucumis sativus L. HOM05D002901 ORTHO05D003183 1.5e-07 60.1 40 67.5
Nn3g16735 Nelumbo nucifera HOM05D002901 ORTHO05D003183 1.5e-07 60.1 40 65.0
Sabra19G0101000 Salix brachista HOM05D002901 ORTHO05D003183 1.5e-07 60.1 40 65.0
ClCG10G013530 Citrullus lanatus HOM05D002901 ORTHO05D003183 2.0e-07 59.7 40 65.0
FAN28G2975 Fragaria x ananassa HOM05D002901 ORTHO05D003183 2.0e-07 59.7 39 69.2
Lj9P646T34 Lonicera japonica HOM05D002901 ORTHO05D003183 2.0e-07 59.7 40 60.0
PSO447G0109 Papaver somniferum HOM05D002901 ORTHO05D003183 2.0e-07 59.7 42 64.3
Potri.013G116700 Populus trichocarpa HOM05D002901 ORTHO05D003183 2.0e-07 59.7 39 66.7
Sabra19G0097500 Salix brachista HOM05D002901 ORTHO05D003183 2.0e-07 59.7 40 62.5
Hma1.2p1_0276F.1_g111320 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 3.4e-07 58.9 40 65.0
Sed0026481 Sechium edule HOM05D002901 ORTHO05D003183 3.4e-07 58.9 40 62.5
DCAR_029545 Daucus carota HOM05D002901 ORTHO05D003183 4.5e-07 58.5 40 65.0
SalBow4G1505 Salvia bowleyana HOM05D002901 ORTHO05D003183 4.5e-07 58.5 38 63.2
SHI09181 Sapria himalayana HOM05D002901 ORTHO05D003183 4.5e-07 58.5 39 61.5
Ah.05g168480 Amaranthus hybridus HOM05D002901 ORTHO05D003183 5.8e-07 58.2 40 62.5
Nitab4.5_0006577g0010 Nicotiana tabacum HOM05D002901 ORTHO05D003183 1.0e-06 57.4 43 58.1
Os02g0783100 Oryza sativa ssp. japonica HOM05D002901 ORTHO05D003183 1.0e-06 57.4 39 56.4
EL10Ac2g03279 Beta vulgaris HOM05D002901 ORTHO05D003183 1.7e-06 56.6 34 70.6
Nitab4.5_0000166g0070 Nicotiana tabacum HOM05D002901 ORTHO05D003183 1.7e-06 56.6 40 60.0
HPP92_020942 Vanilla planifolia HOM05D002901 ORTHO05D003183 1.7e-06 56.6 37 67.6
Zm00001eb192920 Zea mays HOM05D002901 ORTHO05D003183 1.7e-06 56.6 39 59.0


User provided reference genes

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