Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48838 Brassica carinata HOM05D003680 ORTHO05D004264 4.8e-64 247.7 124 100.0
A02p02610 Brassica napus HOM05D003680 ORTHO05D004264 1.1e-25 120.2 64 96.9
BraA02t05229Z Brassica rapa HOM05D003680 ORTHO05D004264 1.1e-25 120.2 64 96.9
C02p07090 Brassica napus HOM05D003680 ORTHO05D004264 4.8e-24 114.8 64 93.8
BolC2t06642H Brassica oleracea HOM05D003680 ORTHO05D004264 4.8e-24 114.8 64 93.8
BcaNung03147 Brassica carinata HOM05D003680 ORTHO05D004264 5.9e-22 107.8 57 100.0
AL6G25290 Arabidopsis lyrata HOM05D003680 ORTHO05D004264 1.3e-21 106.7 64 84.4
AT5G14540 Arabidopsis thaliana HOM05D003680 ORTHO05D004264 2.9e-21 105.5 64 82.8
Carub.0006s1272 Capsella rubella HOM05D003680 ORTHO05D004264 1.1e-20 103.6 64 81.2
CARHR198770 Cardamine hirsuta HOM05D003680 ORTHO05D004264 2.5e-20 102.4 64 82.8
Thhalv10020517m.g Eutrema salsugineum HOM05D003680 ORTHO05D004264 4.0e-18 95.1 73 68.5
THA.LOC104822398 Tarenaya hassleriana HOM05D003680 ORTHO05D004264 6.8e-18 94.4 74 68.9
Sp3g00490 Schrenkiella parvula HOM05D003680 ORTHO05D004264 1.2e-17 93.6 73 69.9
Aa31LG11G15310 Aethionema arabicum HOM05D003680 ORTHO05D004264 1.5e-17 93.2 63 76.2
Atru.chr6.2363 Acer truncatum HOM05D003680 ORTHO05D004264 2.4e-15 85.9 80 61.2
CANSAT64G1511 Cannabis sativa HOM05D003680 ORTHO05D004264 2.4e-15 85.9 81 69.1
AT3G01560 Arabidopsis thaliana HOM05D003680 ORTHO05D004264 3.1e-15 85.5 74 68.9
Aa31LG5G10720 Aethionema arabicum HOM05D003680 ORTHO05D004264 2.7e-14 82.4 66 72.7
Oeu054618.2 Olea europaea HOM05D003680 ORTHO05D004264 1.0e-13 80.5 73 58.9
arahy.Tifrunner.gnm1.ann1.WP4DQS Arachis hypogaea HOM05D003680 ORTHO05D004264 2.2e-13 79.3 69 63.8
arahy.Tifrunner.gnm1.ann1.YJRC23 Arachis hypogaea HOM05D003680 ORTHO05D004264 2.2e-13 79.3 69 63.8
Dinv33451 Davidia involucrata HOM05D003680 ORTHO05D004264 3.8e-13 78.6 77 61.0
Manes.15G166200 Manihot esculenta HOM05D003680 ORTHO05D004264 5.0e-13 78.2 69 62.3
GSVIVG01032424001 Vitis vinifera HOM05D003680 ORTHO05D004264 5.0e-13 78.2 75 60.0
AL3G10590 Arabidopsis lyrata HOM05D003680 ORTHO05D004264 8.5e-13 77.4 64 67.2
Glyma.05G004000 Glycine max HOM05D003680 ORTHO05D004264 8.5e-13 77.4 62 62.9
TAR622G0154 Trochodendron aralioides HOM05D003680 ORTHO05D004264 8.5e-13 77.4 88 58.0
CiPaw.04G027800 Carya illinoinensis HOM05D003680 ORTHO05D004264 1.5e-12 76.6 78 56.4
Cc07_g01830 Coffea canephora HOM05D003680 ORTHO05D004264 1.5e-12 76.6 63 60.3
Dinv35099 Davidia involucrata HOM05D003680 ORTHO05D004264 1.5e-12 76.6 55 70.9
Duzib147G1439 Durio zibethinus HOM05D003680 ORTHO05D004264 1.9e-12 76.3 68 63.2
PGR083G1310 Punica granatum HOM05D003680 ORTHO05D004264 1.9e-12 76.3 63 61.9
Lj2g0009789 Lotus japonicus HOM05D003680 ORTHO05D004264 2.5e-12 75.9 68 61.8
Manes.15G166300 Manihot esculenta HOM05D003680 ORTHO05D004264 3.2e-12 75.5 71 60.6
Peaxi162Scf00129g01425 Petunia axillaris HOM05D003680 ORTHO05D004264 3.2e-12 75.5 68 63.2
Aqoxy3G01124 Aquilegia oxysepala HOM05D003680 ORTHO05D004264 5.5e-12 74.7 69 60.9
Gohir.D04G056700 Gossypium hirsutum HOM05D003680 ORTHO05D004264 5.5e-12 74.7 78 60.3
Gorai.012G063600 Gossypium raimondii HOM05D003680 ORTHO05D004264 5.5e-12 74.7 78 60.3
Solyc02g086520.3 Solanum lycopersicum HOM05D003680 ORTHO05D004264 5.5e-12 74.7 63 58.7
Sopen02g031250 Solanum pennellii HOM05D003680 ORTHO05D004264 5.5e-12 74.7 63 58.7
PGSC0003DMG400012598 Solanum tuberosum HOM05D003680 ORTHO05D004264 5.5e-12 74.7 75 56.0
Haze_14726 Corylus avellana HOM05D003680 ORTHO05D004264 7.2e-12 74.3 77 61.0
Eucgr.J02234 Eucalyptus grandis HOM05D003680 ORTHO05D004264 7.2e-12 74.3 69 60.9
Oeu057059.1 Olea europaea HOM05D003680 ORTHO05D004264 7.2e-12 74.3 76 55.3
CSS0037811 Camellia sinensis var. sinensis HOM05D003680 ORTHO05D004264 9.4e-12 73.9 55 65.5
CSS0042153 Camellia sinensis var. sinensis HOM05D003680 ORTHO05D004264 9.4e-12 73.9 55 65.5
Hund02282 Selenicereus undatus HOM05D003680 ORTHO05D004264 1.2e-11 73.6 79 53.2
Cpa.g.sc108.54 Carica papaya HOM05D003680 ORTHO05D004264 2.1e-11 72.8 105 44.8
Gohir.A05G357400 Gossypium hirsutum HOM05D003680 ORTHO05D004264 3.6e-11 72.0 78 57.7
CDE07G1653 Ceratophyllum demersum HOM05D003680 ORTHO05D004264 4.7e-11 71.6 55 61.8
VMungo0464G0243 Vigna mungo HOM05D003680 ORTHO05D004264 4.7e-11 71.6 63 61.9
Ca_04157_v3 Cicer arietinum L. HOM05D003680 ORTHO05D004264 6.1e-11 71.2 62 59.7
Ciclev10014743m.g Citrus clementina HOM05D003680 ORTHO05D004264 6.1e-11 71.2 55 67.3
Glyma.19G004100 Glycine max HOM05D003680 ORTHO05D004264 6.1e-11 71.2 62 56.5
Nitab4.5_0002682g0050 Nicotiana tabacum HOM05D003680 ORTHO05D004264 6.1e-11 71.2 68 57.4
Psat5g253560 Pisum sativum HOM05D003680 ORTHO05D004264 6.1e-11 71.2 62 59.7
PGSC0003DMG400028065 Solanum tuberosum HOM05D003680 ORTHO05D004264 6.1e-11 71.2 55 61.8
AUR62043212 Chenopodium quinoa HOM05D003680 ORTHO05D004264 8.0e-11 70.9 71 54.9
QL02p075129 Quercus lobata HOM05D003680 ORTHO05D004264 8.0e-11 70.9 69 58.0
Lsat_1_v5_gn_0_32160 Lactuca sativa HOM05D003680 ORTHO05D004264 1.0e-10 70.5 48 70.8
Lalb_Chr06g0175821 Lupinus albus HOM05D003680 ORTHO05D004264 1.0e-10 70.5 78 55.1
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.0e-10 70.5 60 55.0
Zm00001eb122990 Zea mays HOM05D003680 ORTHO05D004264 1.0e-10 70.5 81 51.9
ECA246G0141 Erigeron canadensis HOM05D003680 ORTHO05D004264 1.4e-10 70.1 51 66.7
Psat1g055600 Pisum sativum HOM05D003680 ORTHO05D004264 1.4e-10 70.1 74 55.4
Carub.0003s0051 Capsella rubella HOM05D003680 ORTHO05D004264 1.8e-10 69.7 123 42.3
Actinidia06002 Actinidia chinensis HOM05D003680 ORTHO05D004264 2.3e-10 69.3 77 51.9
ATR1158G006 Amborella trichopoda HOM05D003680 ORTHO05D004264 3.0e-10 68.9 77 54.5
HanXRQChr17g0548551 Helianthus annuus HOM05D003680 ORTHO05D004264 3.0e-10 68.9 79 50.6
Thecc.04G015600 Theobroma cacao HOM05D003680 ORTHO05D004264 3.0e-10 68.9 93 49.5
Cfa007382 Carpinus fangiana HOM05D003680 ORTHO05D004264 4.0e-10 68.6 77 57.1
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 4.0e-10 68.6 63 60.3
Medtr6g004930 Medicago truncatula HOM05D003680 ORTHO05D004264 4.0e-10 68.6 82 48.8
TPR.G14068 Trifolium pratense HOM05D003680 ORTHO05D004264 4.0e-10 68.6 77 54.5
Actinidia36107 Actinidia chinensis HOM05D003680 ORTHO05D004264 5.2e-10 68.2 77 51.9
Sc03g0007570 Simmondsia chinensis HOM05D003680 ORTHO05D004264 5.2e-10 68.2 80 48.8
Migut.H00085 Erythranthe guttata HOM05D003680 ORTHO05D004264 8.8e-10 67.4 60 55.0
Lj7A598G52 Lonicera japonica HOM05D003680 ORTHO05D004264 8.8e-10 67.4 76 51.3
Potri.001G348500 Populus trichocarpa HOM05D003680 ORTHO05D004264 8.8e-10 67.4 78 55.1
FAN05G0183 Fragaria x ananassa HOM05D003680 ORTHO05D004264 1.2e-09 67.0 49 73.5
TWI36G0939 Tripterygium wilfordii HOM05D003680 ORTHO05D004264 1.2e-09 67.0 61 60.7
Prupe.1G550900 Prunus persica HOM05D003680 ORTHO05D004264 1.5e-09 66.6 71 56.3
MBI10_g00728_MAGBIO Magnolia biondii HOM05D003680 ORTHO05D004264 2.0e-09 66.2 77 50.6
MBI10_g00729_MAGBIO Magnolia biondii HOM05D003680 ORTHO05D004264 2.0e-09 66.2 77 51.9
Phvul.004G007500 Phaseolus vulgaris HOM05D003680 ORTHO05D004264 2.0e-09 66.2 62 54.8
unitig_62.g23356 Utricularia gibba HOM05D001993 ORTHO05D004040 2.0e-09 66.2 79 48.1
FvH4_4g26262 Fragaria vesca HOM05D003680 ORTHO05D004264 2.6e-09 65.9 79 57.0
FAN12G0372 Fragaria x ananassa HOM05D003680 ORTHO05D004264 2.6e-09 65.9 79 57.0
FAN12G1559 Fragaria x ananassa HOM05D003680 ORTHO05D004264 2.6e-09 65.9 79 57.0
Nitab4.5_0006802g0060 Nicotiana tabacum HOM05D003680 ORTHO05D004264 2.6e-09 65.9 77 48.1
Zm00001eb336590 Zea mays HOM05D003680 ORTHO05D004264 2.6e-09 65.9 76 50.0
FAN02G4059 Fragaria x ananassa HOM05D003680 ORTHO05D004264 4.4e-09 65.1 79 55.7
Potri.012G083200 Populus trichocarpa HOM05D003680 ORTHO05D004264 4.4e-09 65.1 62 56.5
Solyc12g035240.2 Solanum lycopersicum HOM05D003680 ORTHO05D004264 4.4e-09 65.1 66 54.5
Os01g0169900 Oryza sativa ssp. japonica HOM05D003680 ORTHO05D004264 7.5e-09 64.3 88 46.6
RcHm_v2.0_Chr2g0132111 Rosa chinensis HOM05D003680 ORTHO05D004264 7.5e-09 64.3 49 71.4
Sabra16G0228100 Salix brachista HOM05D003680 ORTHO05D004264 7.5e-09 64.3 78 53.8
Nitab4.5_0000419g0090 Nicotiana tabacum HOM05D003680 ORTHO05D004264 1.3e-08 63.5 73 46.6
Potri.T125008 Populus trichocarpa HOM05D003680 ORTHO05D004264 1.3e-08 63.5 51 62.7
Manes.06G108400 Manihot esculenta HOM05D003680 ORTHO05D004264 1.7e-08 63.2 58 55.2
Actinidia33092 Actinidia chinensis HOM05D003680 ORTHO05D004264 2.2e-08 62.8 58 56.9
CSS0025347 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 2.2e-08 62.8 54 59.3
CSS0032677 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 2.2e-08 62.8 54 59.3
PSO017G2107 Papaver somniferum HOM05D003680 ORTHO05D004264 2.2e-08 62.8 83 47.0
MSTRG.3150 Avicennia marina HOM05D003680 ORTHO05D004264 2.8e-08 62.4 61 54.1
FvH4_5g05870 Fragaria vesca HOM05D003680 ORTHO05D004264 2.8e-08 62.4 61 52.5
FAN04G1021 Fragaria x ananassa HOM05D003680 ORTHO05D004264 2.8e-08 62.4 66 53.0
FAN13G0261 Fragaria x ananassa HOM05D003680 ORTHO05D004264 2.8e-08 62.4 61 52.5
Gohir.A11G066900 Gossypium hirsutum HOM05D003680 ORTHO05D004264 2.8e-08 62.4 93 46.2
Gohir.D11G070800 Gossypium hirsutum HOM05D003680 ORTHO05D004264 2.8e-08 62.4 93 46.2
Gorai.007G076000 Gossypium raimondii HOM05D003680 ORTHO05D004264 2.8e-08 62.4 93 46.2
unitig_52.g17660 Utricularia gibba HOM05D003680 ORTHO05D004264 2.8e-08 62.4 60 50.0
MSTRG.3151 Avicennia marina HOM05D003680 ORTHO05D004264 3.7e-08 62.0 80 46.2
EL10Ac4g08567 Beta vulgaris HOM05D003680 ORTHO05D004264 3.7e-08 62.0 65 53.8
PSO478G2404 Papaver somniferum HOM05D003680 ORTHO05D004264 3.7e-08 62.0 83 47.0
DCAR_021716 Daucus carota HOM05D003680 ORTHO05D004264 4.9e-08 61.6 97 47.4
MD09G1028500 Malus domestica HOM05D003680 ORTHO05D004264 4.9e-08 61.6 129 40.3
Oeu006814.2 Olea europaea HOM05D003680 ORTHO05D004264 4.9e-08 61.6 53 60.4
FAN08G0581 Fragaria x ananassa HOM05D003680 ORTHO05D004264 8.3e-08 60.8 66 51.5
Sabra12G0059900 Salix brachista HOM05D003680 ORTHO05D004264 8.3e-08 60.8 83 50.6
Mapoly0092s0027 Marchantia polymorpha HOM05D003680 ORTHO05D004264 1.4e-07 60.1 65 56.9
CiPaw.03G042200 Carya illinoinensis HOM05D003680 ORTHO05D004264 1.8e-07 59.7 74 47.3
FAN14G2184 Fragaria x ananassa HOM05D003680 ORTHO05D004264 2.4e-07 59.3 80 55.0
Rhsim08G0175600 Rhododendron simsii HOM05D003680 ORTHO05D004264 2.4e-07 59.3 127 40.9
Sopen12g014830 Solanum pennellii HOM05D003680 ORTHO05D004264 2.4e-07 59.3 66 50.0
GSVIVG01007680001 Vitis vinifera HOM05D003680 ORTHO05D004264 2.4e-07 59.3 81 49.4
CARHR075340 Cardamine hirsuta HOM05D003680 ORTHO05D004264 3.1e-07 58.9 58 62.1
Eucgr.I00119 Eucalyptus grandis HOM05D003680 ORTHO05D004264 3.1e-07 58.9 63 52.4
Os05g0169400 Oryza sativa ssp. japonica HOM05D003680 ORTHO05D004264 3.1e-07 58.9 41 68.3
SEGI_20908 Sequoiadendron giganteum HOM05D003680 ORTHO05D004264 5.4e-07 58.2 68 51.5
Ciclev10019708m.g Citrus clementina HOM05D003680 ORTHO05D004264 9.2e-07 57.4 96 43.8
CDE06G0754 Ceratophyllum demersum HOM05D003680 ORTHO05D000787 1.2e-06 57.0 45 60.0
PGR044G1290 Punica granatum HOM05D003680 ORTHO05D004264 1.2e-06 57.0 61 49.2
SMO266G0040 Selaginella moellendorffii HOM05D003680 ORTHO05D004264 1.2e-06 57.0 61 52.5
Prupe.3G290000 Prunus persica HOM05D003680 ORTHO05D004264 1.6e-06 56.6 127 38.6
FvH4_6g28150 Fragaria vesca HOM05D003680 ORTHO05D004264 2.0e-06 56.2 79 54.4
Haze_07557 Corylus avellana HOM05D003680 ORTHO05D004264 3.5e-06 55.5 45 60.0
Eucgr.K02812 Eucalyptus grandis HOM05D003680 ORTHO05D004264 3.5e-06 55.5 52 51.9
CSS0043829 Camellia sinensis var. sinensis HOM05D003680 ORTHO05D004264 4.5e-06 55.1 77 48.1
vmacro18275 Vaccinium macrocarpon HOM05D003680 ORTHO05D004264 4.5e-06 55.1 73 45.2
RcHm_v2.0_Chr5g0029881 Rosa chinensis HOM05D003680 ORTHO05D004264 7.7e-06 54.3 35 74.3


User provided reference genes

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