Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48815 Brassica carinata HOM05D000805 ORTHO05D000624 2.9e-91 338.6 174 100.0
C01p45660 Brassica napus HOM05D000805 ORTHO05D000624 8.5e-59 230.7 135 90.4
BolC1t04527H Brassica oleracea HOM05D000805 ORTHO05D000624 1.2e-57 226.9 118 99.2
A01p35870 Brassica napus HOM05D000805 ORTHO05D000624 2.9e-51 205.7 119 90.8
BraA01t03666Z Brassica rapa HOM05D000805 ORTHO05D000624 2.9e-51 205.7 119 90.8
Sp3g16650 Schrenkiella parvula HOM05D000805 ORTHO05D000624 2.6e-44 182.6 136 73.5
BcaB06g25905 Brassica carinata HOM05D000805 ORTHO05D000624 2.1e-41 172.9 119 74.8
BcaC05g28600 Brassica carinata HOM05D000805 ORTHO05D000624 8.0e-41 171.0 119 73.1
C05p47030 Brassica napus HOM05D000805 ORTHO05D000624 8.0e-41 171.0 119 73.1
BolC5t33433H Brassica oleracea HOM05D000805 ORTHO05D000624 2.3e-40 169.5 119 72.3
A05p31050 Brassica napus HOM05D000805 ORTHO05D000624 4.0e-40 168.7 119 72.3
BraA05t21947Z Brassica rapa HOM05D000805 ORTHO05D000624 4.0e-40 168.7 119 72.3
Thhalv10021947m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 7.5e-39 164.5 136 67.6
AL3G31880 Arabidopsis lyrata HOM05D000805 ORTHO05D000624 7.0e-37 157.9 138 64.5
AL451U10010 Arabidopsis lyrata HOM05D000805 ORTHO05D000624 7.0e-37 157.9 138 64.5
Carub.0003s1835 Capsella rubella HOM05D000805 ORTHO05D000624 1.2e-36 157.1 137 65.0
AT3G18570 Arabidopsis thaliana HOM05D000805 ORTHO05D000624 1.3e-35 153.7 137 64.2
CARHR093950 Cardamine hirsuta HOM05D000805 ORTHO05D000624 1.3e-35 153.7 136 65.4
BcaC01g03690 Brassica carinata HOM05D000805 ORTHO05D000624 1.2e-33 147.1 136 60.3
C03p49560 Brassica napus HOM05D000805 ORTHO05D000624 1.2e-33 147.1 136 60.3
BolC3t17254H Brassica oleracea HOM05D000805 ORTHO05D000624 1.2e-33 147.1 136 60.3
A03p40720 Brassica napus HOM05D000805 ORTHO05D000624 4.7e-33 145.2 136 60.3
BraA03t13229Z Brassica rapa HOM05D000805 ORTHO05D000624 4.7e-33 145.2 136 60.3
Aa31LG8G5430 Aethionema arabicum HOM05D000805 ORTHO05D000624 5.2e-32 141.7 135 59.3
BcaB04g18991 Brassica carinata HOM05D000805 ORTHO05D000624 1.2e-31 140.6 135 57.8
THA.LOC104819676 Tarenaya hassleriana HOM05D000805 ORTHO05D000624 1.3e-27 127.1 131 57.3
Thhalv10011990m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 3.6e-25 119.0 140 50.7
THA.LOC104821850 Tarenaya hassleriana HOM05D000805 ORTHO05D000624 3.4e-23 112.5 122 56.6
Sp1g35900 Schrenkiella parvula HOM05D000805 ORTHO05D000624 5.7e-23 111.7 137 49.6
A06p04050 Brassica napus HOM05D002822 ORTHO05D003179 1.3e-22 110.5 138 48.6
C06p03750 Brassica napus HOM05D002822 ORTHO05D003179 2.4e-21 106.3 138 47.8
BcaC08g43105 Brassica carinata HOM05D000805 ORTHO05D000624 3.1e-21 105.9 127 51.2
AT1G48990 Arabidopsis thaliana HOM05D000805 ORTHO05D000624 1.2e-20 104.0 112 56.2
AL1G55860 Arabidopsis lyrata HOM05D001087 ORTHO05D000624 3.5e-20 102.4 123 52.0
BcaB04g17374 Brassica carinata HOM05D000805 ORTHO05D000624 3.5e-20 102.4 126 53.2
CARHR039000 Cardamine hirsuta HOM05D000805 ORTHO05D000624 1.7e-19 100.1 107 57.0
Aa31LG10G4940 Aethionema arabicum HOM05D000805 ORTHO05D000624 1.1e-18 97.4 133 46.6
Carub.0001s3816 Capsella rubella HOM05D000805 ORTHO05D000624 1.1e-18 97.4 120 51.7
C08p04520 Brassica napus HOM05D000805 ORTHO05D000624 2.5e-18 96.3 123 50.4
BolC8t47257H Brassica oleracea HOM05D000805 ORTHO05D000624 2.5e-18 96.3 123 50.4
BcaC07g37088 Brassica carinata HOM05D000805 ORTHO05D000624 7.3e-18 94.7 113 52.2
BraA08t32453Z Brassica rapa HOM05D000805 ORTHO05D000624 9.5e-18 94.4 113 52.2
Cpa.g.sc13.63 Carica papaya HOM05D000805 ORTHO05D000624 1.8e-16 90.1 92 56.5
Nitab4.5_0001432g0070 Nicotiana tabacum HOM05D000805 ORTHO05D000624 1.8e-16 90.1 109 49.5
CiPaw.15G125600 Carya illinoinensis HOM05D000805 ORTHO05D000624 2.3e-16 89.7 97 53.6
Atru.chr9.743 Acer truncatum HOM05D000805 ORTHO05D000624 4.0e-16 89.0 111 50.5
Dinv38593 Davidia involucrata HOM05D000805 ORTHO05D000624 4.0e-16 89.0 95 53.7
Peaxi162Scf00015g00065 Petunia axillaris HOM05D000805 ORTHO05D000624 1.2e-15 87.4 99 51.5
PGSC0003DMG400005620 Solanum tuberosum HOM05D000805 ORTHO05D000624 1.2e-15 87.4 99 51.5
DCAR_023179 Daucus carota HOM05D000805 ORTHO05D000624 2.0e-15 86.7 90 55.6
TAR629G2157 Trochodendron aralioides HOM05D000805 ORTHO05D000624 2.0e-15 86.7 96 50.0
Ciclev10022589m.g Citrus clementina HOM05D000805 ORTHO05D000624 2.6e-15 86.3 93 53.8
Oeu016163.1 Olea europaea HOM05D000805 ORTHO05D000624 2.6e-15 86.3 94 46.8
CSS0016408 Camellia sinensis var. sinensis HOM05D000805 ORTHO05D000624 3.4e-15 85.9 103 51.5
Nitab4.5_0003716g0070 Nicotiana tabacum HOM05D000805 ORTHO05D000624 3.4e-15 85.9 114 47.4
Peaxi162Scf00013g00094 Petunia axillaris HOM05D000805 ORTHO05D000624 3.4e-15 85.9 105 49.5
CAN.G438.110 Capsicum annuum HOM05D000805 ORTHO05D000624 4.4e-15 85.5 105 46.7
Nn3g17697 Nelumbo nucifera HOM05D000805 ORTHO05D000624 4.4e-15 85.5 111 46.8
Oeu027135.1 Olea europaea HOM05D000805 ORTHO05D000624 5.8e-15 85.1 94 48.9
PSO384G3992 Papaver somniferum HOM05D000805 ORTHO05D000624 5.8e-15 85.1 94 48.9
Sopen03g038680 Solanum pennellii HOM05D000805 ORTHO05D000624 5.8e-15 85.1 106 50.0
GSVIVG01008228001 Vitis vinifera HOM05D000805 ORTHO05D000624 5.8e-15 85.1 109 46.8
Solyc03g119820.1 Solanum lycopersicum HOM05D000805 ORTHO05D000624 7.5e-15 84.7 106 50.0
Nitab4.5_0007105g0030 Nicotiana tabacum HOM05D000805 ORTHO05D000624 9.8e-15 84.3 92 51.1
COL.COLO4_22703 Corchorus olitorius HOM05D000805 ORTHO05D000624 2.2e-14 83.2 95 51.6
Eucgr.K02651 Eucalyptus grandis HOM05D000805 ORTHO05D000624 2.2e-14 83.2 97 49.5
Migut.L01615 Erythranthe guttata HOM05D000805 ORTHO05D000624 3.7e-14 82.4 94 50.0
PSO339G2444 Papaver somniferum HOM05D000805 ORTHO05D000624 3.7e-14 82.4 94 47.9
QL10p023095 Quercus lobata HOM05D000805 ORTHO05D000624 3.7e-14 82.4 121 45.5
Actinidia35074 Actinidia chinensis HOM05D000805 ORTHO05D000624 6.4e-14 81.6 95 49.5
MD14G1221100 Malus domestica HOM05D000805 ORTHO05D000624 6.4e-14 81.6 92 51.1
Lj9P432T54 Lonicera japonica HOM05D000805 ORTHO05D000624 8.3e-14 81.3 92 48.9
Prupe.5G216500 Prunus persica HOM05D000805 ORTHO05D000624 1.1e-13 80.9 95 49.5
SGA_v2.0_scaffold94G28615 Striga asiatica HOM05D000805 ORTHO05D000624 1.1e-13 80.9 95 46.3
Gohir.A09G045000 Gossypium hirsutum HOM05D000805 ORTHO05D000624 1.4e-13 80.5 93 50.5
HPP92_008054 Vanilla planifolia HOM05D000805 ORTHO05D000624 2.4e-13 79.7 93 45.2
PGSC0003DMG400004072 Solanum tuberosum HOM05D000805 ORTHO05D000624 4.1e-13 79.0 107 44.9
EL10Ac5g11243 Beta vulgaris HOM05D000805 ORTHO05D000624 5.4e-13 78.6 105 44.8
CsaV3_1G003570 Cucumis sativus L. HOM05D000805 ORTHO05D000624 7.0e-13 78.2 101 41.6
Dinv36897 Davidia involucrata HOM05D000805 ORTHO05D000624 7.0e-13 78.2 103 43.7
Gohir.D09G046500 Gossypium hirsutum HOM05D000805 ORTHO05D000624 7.0e-13 78.2 93 49.5
Gorai.006G063600 Gossypium raimondii HOM05D000805 ORTHO05D000624 7.0e-13 78.2 93 49.5
MD06G1210400 Malus domestica HOM05D000805 ORTHO05D000624 7.0e-13 78.2 116 43.1
Phvul.003G177800 Phaseolus vulgaris HOM05D000805 ORTHO05D000624 7.0e-13 78.2 95 44.2
Sc04g0003780 Simmondsia chinensis HOM05D000805 ORTHO05D000624 7.0e-13 78.2 95 47.4
Sc04g0003940 Simmondsia chinensis HOM05D000805 ORTHO05D000624 7.0e-13 78.2 95 47.4
TWI15G0225 Tripterygium wilfordii HOM05D000805 ORTHO05D000624 7.0e-13 78.2 95 48.4
TAR371G0521 Trochodendron aralioides HOM05D000805 ORTHO05D000624 7.0e-13 78.2 94 46.8
Thecc.03G027500 Theobroma cacao HOM05D000805 ORTHO05D000624 9.2e-13 77.8 95 46.3
TAR622G1246 Trochodendron aralioides HOM05D000805 ORTHO05D000624 9.2e-13 77.8 92 45.7
FvH4_5g12770 Fragaria vesca HOM05D000805 ORTHO05D000624 1.2e-12 77.4 102 43.1
FAN08G0915 Fragaria x ananassa HOM05D000805 ORTHO05D000624 1.2e-12 77.4 102 43.1
FAN18G2577 Fragaria x ananassa HOM05D000805 ORTHO05D000624 1.2e-12 77.4 102 43.1
Lj9P215T11 Lonicera japonica HOM05D000805 ORTHO05D000624 1.6e-12 77.0 92 47.8
RcHm_v2.0_Chr7g0184461 Rosa chinensis HOM05D000805 ORTHO05D000624 1.6e-12 77.0 96 44.8
FAN13G0318 Fragaria x ananassa HOM05D000805 ORTHO05D000624 2.0e-12 76.6 94 45.7
Lalb_Chr13g0302381 Lupinus albus HOM05D000805 ORTHO05D000624 2.0e-12 76.6 95 44.2
CANSAT56G2119 Cannabis sativa HOM05D000805 ORTHO05D000624 2.7e-12 76.3 95 46.3
FAN18G2287 Fragaria x ananassa HOM05D000805 ORTHO05D000624 2.7e-12 76.3 102 42.2
TWI81G1081 Tripterygium wilfordii HOM05D000805 ORTHO05D000624 2.7e-12 76.3 95 46.3
Aqoxy3G00383 Aquilegia oxysepala HOM05D000805 ORTHO05D000624 3.5e-12 75.9 94 45.7
VMungo1215G1355 Vigna mungo HOM05D000805 ORTHO05D000624 3.5e-12 75.9 95 44.2
Duzib068G0145 Durio zibethinus HOM05D000805 ORTHO05D000624 4.6e-12 75.5 95 48.4
Haze_18596 Corylus avellana HOM05D000805 ORTHO05D000624 7.8e-12 74.7 93 47.3
Manes.05G118400 Manihot esculenta HOM05D000805 ORTHO05D000624 7.8e-12 74.7 92 45.7
ECA246G0147 Erigeron canadensis HOM05D000805 ORTHO05D000624 1.0e-11 74.3 99 44.4
Solyc06g069260.1 Solanum lycopersicum HOM05D000805 ORTHO05D000624 1.0e-11 74.3 109 43.1
Sopen06g026520 Solanum pennellii HOM05D000805 ORTHO05D000624 1.0e-11 74.3 88 46.6
unitig_746.g26754 Utricularia gibba HOM05D000805 ORTHO05D000624 1.0e-11 74.3 101 45.5
MELO3C017282.2 Cucumis melo HOM05D000805 ORTHO05D000624 1.3e-11 73.9 95 41.1
Lj4g0019200 Lotus japonicus HOM05D000805 ORTHO05D000624 1.3e-11 73.9 95 42.1
Ca_02532_v3 Cicer arietinum L. HOM05D000805 ORTHO05D000624 2.3e-11 73.2 95 45.3
Glyma.05G013800 Glycine max HOM05D000805 ORTHO05D000624 2.3e-11 73.2 95 44.2
HanXRQChr05g0153271 Helianthus annuus HOM05D000805 ORTHO05D000624 2.3e-11 73.2 92 48.9
Eucgr.B00692 Eucalyptus grandis HOM05D000805 ORTHO05D000624 3.0e-11 72.8 85 47.1
Lsat_1_v5_gn_5_24340 Lactuca sativa HOM05D000805 ORTHO05D000624 3.0e-11 72.8 92 47.8
Medtr4g111770 Medicago truncatula HOM05D000805 ORTHO05D000624 3.9e-11 72.4 86 48.8
PGR044G2217 Punica granatum HOM05D000805 ORTHO05D000624 3.9e-11 72.4 97 46.4
Sabra12G0042600 Salix brachista HOM05D000805 ORTHO05D000624 5.0e-11 72.0 96 47.9
Psat4g044680 Pisum sativum HOM05D000805 ORTHO05D000624 8.6e-11 71.2 123 38.2
MBI10_g08548_MAGBIO Magnolia biondii HOM05D000805 ORTHO05D000624 1.1e-10 70.9 95 45.3
Gohir.D11G006600 Gossypium hirsutum HOM05D000805 ORTHO05D000624 1.5e-10 70.5 99 38.4
Glyma.06G209900 Glycine max HOM05D000805 ORTHO05D000624 1.9e-10 70.1 92 41.3
Gorai.007G007900 Gossypium raimondii HOM05D000805 ORTHO05D000624 1.9e-10 70.1 99 38.4
ClCG06G015070 Citrullus lanatus HOM05D000805 ORTHO05D000624 2.5e-10 69.7 95 41.1
Gohir.A11G007500 Gossypium hirsutum HOM05D000805 ORTHO05D000624 2.5e-10 69.7 99 38.4
Sabra15G0076100 Salix brachista HOM05D000805 ORTHO05D000624 2.5e-10 69.7 123 39.0
unitig_60.g25806 Utricularia gibba HOM05D000805 ORTHO05D000624 2.5e-10 69.7 95 42.1
Glyma.17G122000 Glycine max HOM05D000805 ORTHO05D000624 3.3e-10 69.3 95 42.1
Lalb_Chr23g0274941 Lupinus albus HOM05D000805 ORTHO05D000624 3.3e-10 69.3 127 38.6
PGR083G2122 Punica granatum HOM05D000805 ORTHO05D000624 4.3e-10 68.9 93 43.0
RhsimUnG0106300 Rhododendron simsii HOM05D000805 ORTHO05D000624 9.5e-10 67.8 96 40.6
Lj5P141T66 Lonicera japonica HOM05D000805 ORTHO05D000624 1.2e-09 67.4 82 48.8
ATR0053G013 Amborella trichopoda HOM05D000805 ORTHO05D000624 1.6e-09 67.0 109 34.9
Potri.012G059400 Populus trichocarpa HOM05D000805 ORTHO05D000624 2.1e-09 66.6 96 46.9
Psat1g210440 Pisum sativum HOM05D000805 ORTHO05D000624 2.8e-09 66.2 82 46.3
Ca_02660_v3 Cicer arietinum L. HOM05D000805 ORTHO05D000624 3.6e-09 65.9 112 40.2
Lsat_1_v5_gn_4_112220 Lactuca sativa HOM05D000805 ORTHO05D000624 8.0e-09 64.7 91 45.1
Os05g0576700 Oryza sativa ssp. japonica HOM05D000805 ORTHO05D000624 1.4e-08 63.9 109 35.8
Lalb_Chr07g0178551 Lupinus albus HOM05D000805 ORTHO05D000624 1.8e-08 63.5 94 40.4
CDE07G0568 Ceratophyllum demersum HOM05D000805 ORTHO05D000624 2.3e-08 63.2 85 43.5
Gorai.008G285100 Gossypium raimondii HOM05D000805 ORTHO05D000624 4.0e-08 62.4 96 43.8
CDE06G1043 Ceratophyllum demersum HOM05D000805 ORTHO05D000624 5.2e-08 62.0 92 41.3
Gohir.D12G265400 Gossypium hirsutum HOM05D000805 ORTHO05D000624 5.2e-08 62.0 122 41.0
PSO017G6101 Papaver somniferum HOM05D000805 ORTHO05D000624 5.2e-08 62.0 79 46.8
Duzib205G0938 Durio zibethinus HOM05D000805 ORTHO05D000624 6.8e-08 61.6 95 38.9
Gohir.A12G265200 Gossypium hirsutum HOM05D000805 ORTHO05D000624 6.8e-08 61.6 95 43.2
QL05p063059 Quercus lobata HOM05D000805 ORTHO05D000624 1.2e-07 60.8 137 35.0
Gohir.A01G148918 Gossypium hirsutum HOM05D000805 ORTHO05D000624 9.8e-07 57.8 117 36.8
Zm00001eb344420 Zea mays HOM05D000805 ORTHO05D000624 9.8e-07 57.8 107 31.8
Lj1g0022824 Lotus japonicus HOM05D000805 ORTHO05D000624 1.7e-06 57.0 95 40.0
arahy.Tifrunner.gnm1.ann1.GFBT7E Arachis hypogaea HOM05D000805 ORTHO05D000624 3.7e-06 55.8 92 37.0
AUR62036943 Chenopodium quinoa HOM05D000805 ORTHO05D000624 4.9e-06 55.5 63 47.6
Sed0015398 Sechium edule HOM05D000805 ORTHO05D000624 4.9e-06 55.5 92 40.2


User provided reference genes

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