Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 9.5e-30 132.9 69 100.0
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 9.5e-30 132.9 69 100.0
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 6.2e-29 130.2 69 97.1
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 2.4e-25 118.2 69 92.8
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 2.7e-24 114.8 69 88.4
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 3.9e-23 110.9 69 84.1
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 1.1e-22 109.4 69 82.6
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 1.1e-22 109.4 69 82.6
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 1.1e-22 109.4 69 82.6
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 1.9e-22 108.6 66 84.8
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 1.9e-22 108.6 69 84.1
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 2.5e-22 108.2 69 81.2
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 1.2e-21 105.9 67 82.1
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 4.0e-20 100.9 69 76.8
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 6.9e-20 100.1 66 80.3
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 4.4e-19 97.4 73 74.0
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 9.9e-19 96.3 69 76.8
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 7.3e-14 80.1 55 67.3
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 9.6e-14 79.7 71 60.6
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 3.6e-13 77.8 58 62.1
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 6.2e-13 77.0 55 65.5
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 1.8e-12 75.5 69 56.5
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 6.9e-12 73.6 60 60.0
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 9.0e-12 73.2 60 56.7
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 1.5e-11 72.4 58 58.6
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 1.5e-11 72.4 54 61.1
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 1.5e-11 72.4 57 57.9
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 2.0e-11 72.0 52 67.3
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 2.6e-11 71.6 57 59.6
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 3.4e-11 71.2 63 55.6
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 4.5e-11 70.9 65 58.5
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 4.5e-11 70.9 53 58.5
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 5.8e-11 70.5 60 58.3
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 5.8e-11 70.5 53 58.5
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 5.8e-11 70.5 53 58.5
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 9.9e-11 69.7 52 65.4
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 1.7e-10 68.9 64 57.8
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 2.2e-10 68.6 55 58.2
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 2.2e-10 68.6 58 58.6
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 2.2e-10 68.6 55 56.4
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 2.2e-10 68.6 55 56.4
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 2.2e-10 68.6 59 54.2
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 2.2e-10 68.6 59 54.2
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 2.2e-10 68.6 56 55.4
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 2.9e-10 68.2 55 58.2
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 3.8e-10 67.8 56 53.6
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 3.8e-10 67.8 59 55.9
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 3.8e-10 67.8 66 54.5
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 4.9e-10 67.4 53 50.9
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 4.9e-10 67.4 54 57.4
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 1.1e-09 66.2 56 55.4
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 1.4e-09 65.9 69 50.7
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 1.4e-09 65.9 56 55.4
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 1.4e-09 65.9 59 52.5
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 1.4e-09 65.9 63 54.0
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 1.4e-09 65.9 51 58.8
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 4.2e-09 64.3 65 50.8
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 4.2e-09 64.3 65 50.8
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 4.2e-09 64.3 49 61.2
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 7.1e-09 63.5 65 49.2
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 7.1e-09 63.5 55 50.9
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 7.1e-09 63.5 56 55.4
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 9.3e-09 63.2 65 49.2
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 9.3e-09 63.2 65 49.2
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 9.3e-09 63.2 49 61.2
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 9.3e-09 63.2 53 54.7
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 1.2e-08 62.8 46 63.0
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 1.6e-08 62.4 49 61.2
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 2.1e-08 62.0 57 50.9
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 3.5e-08 61.2 48 58.3
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 6.0e-08 60.5 66 51.5
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 6.0e-08 60.5 54 51.9
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 6.0e-08 60.5 52 51.9
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 6.0e-08 60.5 47 55.3
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 1.0e-07 59.7 52 51.9
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 1.0e-07 59.7 52 51.9
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 1.8e-07 58.9 60 46.7
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 6.7e-07 57.0 52 48.1
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 1.9e-06 55.5 47 55.3
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 2.5e-06 55.1 60 46.7
CBR_g39724 Chara braunii HOM05D007790 ORTHO05D131067 5.6e-06 53.9 53 52.8
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 5.6e-06 53.9 43 55.8
HanXRQChr05g0152891 Helianthus annuus HOM05D007790 ORTHO05D009880 9.6e-06 53.1 48 52.1


User provided reference genes

Program Settings