Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48772 Brassica carinata HOM05D002209 ORTHO05D007926 3.2e-139 498.4 254 100.0
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 3.2e-139 498.4 254 100.0
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 1.6e-138 496.1 254 99.2
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 1.3e-137 493.0 254 98.4
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.3e-137 493.0 254 98.4
Thhalv10021375m.g Eutrema salsugineum HOM05D002209 ORTHO05D007926 9.0e-134 480.3 254 94.9
BcaB04g20790 Brassica carinata HOM05D002209 ORTHO05D007926 2.6e-133 478.8 254 94.9
Sp3g16280 Schrenkiella parvula HOM05D002209 ORTHO05D007926 5.4e-131 471.1 254 91.7
A05p31590 Brassica napus HOM05D002209 ORTHO05D007926 1.2e-130 469.9 254 93.3
BcaC05g28661 Brassica carinata HOM05D002209 ORTHO05D007926 3.5e-130 468.4 254 92.5
C05p47920 Brassica napus HOM05D002209 ORTHO05D007926 3.5e-130 468.4 254 92.5
BolC5t33504H Brassica oleracea HOM05D002209 ORTHO05D007926 3.5e-130 468.4 254 92.5
BraA05t21994Z Brassica rapa HOM05D002209 ORTHO05D007926 6.0e-130 467.6 254 92.5
AT3G18165 Arabidopsis thaliana HOM05D002209 ORTHO05D007926 1.1e-128 463.4 254 90.2
AL3G31340 Arabidopsis lyrata HOM05D002209 ORTHO05D007926 7.4e-128 460.7 254 90.2
CARHR093490 Cardamine hirsuta HOM05D002209 ORTHO05D007926 2.8e-127 458.8 254 89.4
Carub.0003s1789 Capsella rubella HOM05D002209 ORTHO05D007926 2.2e-124 449.1 254 87.8
THA.LOC104820370 Tarenaya hassleriana HOM05D002209 ORTHO05D007926 8.4e-116 420.6 246 83.7
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 4.6e-114 414.8 236 86.0
Thecc.06G020700 Theobroma cacao HOM05D002209 ORTHO05D007926 2.4e-94 349.4 246 67.1
Potri.015G041800 Populus trichocarpa HOM05D002209 ORTHO05D007926 3.1e-94 349.0 253 68.0
Manes.14G168500 Manihot esculenta HOM05D002209 ORTHO05D007926 4.1e-94 348.6 249 68.3
Sabra15G0055300 Salix brachista HOM05D002209 ORTHO05D007926 4.1e-94 348.6 248 68.5
Duzib160G0876 Durio zibethinus HOM05D002209 ORTHO05D007926 9.1e-94 347.4 246 67.5
Nitab4.5_0012369g0010 Nicotiana tabacum HOM05D002209 ORTHO05D007926 2.7e-90 335.9 254 69.7
PGR083G0394 Punica granatum HOM05D002209 ORTHO05D007926 3.6e-90 335.5 244 68.9
Sc10g0009340 Simmondsia chinensis HOM05D002209 ORTHO05D007926 4.7e-90 335.1 251 64.5
Gohir.D06G123100 Gossypium hirsutum HOM05D002209 ORTHO05D007926 7.9e-90 334.3 247 65.6
TWI81G0293 Tripterygium wilfordii HOM05D002209 ORTHO05D007926 7.9e-90 334.3 251 68.5
Gorai.010G143200 Gossypium raimondii HOM05D002209 ORTHO05D007926 1.4e-89 333.6 247 65.6
Gohir.A06G114800 Gossypium hirsutum HOM05D002209 ORTHO05D007926 2.3e-89 332.8 247 66.0
Peaxi162Scf00683g10026 Petunia axillaris HOM05D002209 ORTHO05D007926 2.3e-89 332.8 254 68.5
Sabra15G0061600 Salix brachista HOM05D002209 ORTHO05D007926 3.9e-89 332.0 283 60.4
CsaV3_1G007020 Cucumis sativus L. HOM05D002209 ORTHO05D007926 3.3e-88 328.9 250 66.0
ClCG04G010780 Citrullus lanatus HOM05D002209 ORTHO05D007926 4.4e-88 328.6 255 65.1
Ciclev10009263m.g Citrus clementina HOM05D002209 ORTHO05D007926 5.7e-88 328.2 244 67.2
MELO3C002120.2 Cucumis melo HOM05D002209 ORTHO05D007926 1.7e-87 326.6 250 65.6
Atru.chr9.948 Acer truncatum HOM05D002209 ORTHO05D007926 4.8e-87 325.1 248 66.9
Sopen00g010550 Solanum pennellii HOM05D002209 ORTHO05D007926 2.4e-86 322.8 248 68.1
PGSC0003DMG400005659 Solanum tuberosum HOM05D002209 ORTHO05D007926 4.1e-86 322.0 246 68.7
Nitab4.5_0000150g0080 Nicotiana tabacum HOM05D002209 ORTHO05D007926 2.0e-85 319.7 248 67.3
Nitab4.5_0001158g0030 Nicotiana tabacum HOM05D002209 ORTHO05D007926 2.6e-85 319.3 236 71.2
CSS0012934 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 7.7e-85 317.8 259 62.5
CSS0018698 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 7.7e-85 317.8 259 62.5
Cfa019698 Carpinus fangiana HOM05D002209 ORTHO05D007926 2.9e-84 315.8 251 64.1
Sed0021446 Sechium edule HOM05D002209 ORTHO05D007926 1.1e-83 313.9 247 63.6
VMungo0251G3506 Vigna mungo HOM05D002209 ORTHO05D007926 1.9e-83 313.2 245 62.9
Phvul.002G327300 Phaseolus vulgaris HOM05D002209 ORTHO05D007926 3.2e-83 312.4 245 62.4
Eucgr.B00853 Eucalyptus grandis HOM05D002209 ORTHO05D007926 4.2e-83 312.0 250 61.6
Ah.11g045280 Amaranthus hybridus HOM05D002209 ORTHO05D007926 1.2e-82 310.5 244 62.7
Lj4g0023570 Lotus japonicus HOM05D002209 ORTHO05D007926 1.6e-82 310.1 243 63.4
CAN.G1129.32 Capsicum annuum HOM05D002209 ORTHO05D007926 6.1e-82 308.1 250 66.0
EL10Ac5g11521 Beta vulgaris HOM05D002209 ORTHO05D007926 8.0e-82 307.8 244 62.7
Glyma.05G243600 Glycine max HOM05D002209 ORTHO05D007926 8.0e-82 307.8 246 61.8
SGA_v2.0_scaffold21G09613 Striga asiatica HOM05D002209 ORTHO05D007926 1.0e-81 307.4 249 63.9
Lalb_Chr09g0330531 Lupinus albus HOM05D002209 ORTHO05D007926 3.0e-81 305.8 248 60.5
Hma1.2p1_1257F.1_g270850 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 5.2e-81 305.1 253 62.5
Solyc03g119010.3 Solanum lycopersicum HOM05D002209 ORTHO05D007926 5.2e-81 305.1 236 68.2
TAR622G1089 Trochodendron aralioides HOM05D002209 ORTHO05D007926 5.2e-81 305.1 239 63.6
MD00G1160500 Malus domestica HOM05D002209 ORTHO05D007926 6.7e-81 304.7 249 63.9
Prupe.5G229800 Prunus persica HOM05D002209 ORTHO05D007926 1.1e-80 303.9 256 61.3
CiPaw.15G139100 Carya illinoinensis HOM05D002209 ORTHO05D007926 1.5e-80 303.5 240 64.6
Medtr8g106740 Medicago truncatula HOM05D002209 ORTHO05D007926 1.5e-80 303.5 244 61.1
Migut.L01913 Erythranthe guttata HOM05D002209 ORTHO05D007926 2.0e-80 303.1 244 62.7
Glyma.08G051400 Glycine max HOM05D002209 ORTHO05D007926 2.6e-80 302.8 237 62.9
Rhsim12G0139900 Rhododendron simsii HOM05D002209 ORTHO05D007926 2.6e-80 302.8 242 62.8
MSTRG.22939 Avicennia marina HOM05D002209 ORTHO05D007926 2.8e-79 299.3 249 63.1
CANSAT80G1708 Cannabis sativa HOM05D002209 ORTHO05D007926 3.7e-79 298.9 243 62.1
CANSAT80G2078 Cannabis sativa HOM05D002209 ORTHO05D007926 3.7e-79 298.9 243 62.1
QL10p027511 Quercus lobata HOM05D002209 ORTHO05D007926 4.8e-79 298.5 245 60.8
SalBow5G1692 Salvia bowleyana HOM05D002209 ORTHO05D007926 4.8e-79 298.5 237 64.1
Actinidia18911 Actinidia chinensis HOM05D002209 ORTHO05D007926 8.2e-79 297.7 248 61.3
Lsat_1_v5_gn_3_114081 Lactuca sativa HOM05D002209 ORTHO05D007926 1.4e-78 297.0 248 60.5
PSO017G1461 Papaver somniferum HOM05D002209 ORTHO05D007926 1.4e-78 297.0 248 60.5
ECA240G0871 Erigeron canadensis HOM05D002209 ORTHO05D007926 2.4e-78 296.2 251 59.8
Actinidia35109 Actinidia chinensis HOM05D002209 ORTHO05D007926 3.1e-78 295.8 248 60.9
arahy.Tifrunner.gnm1.ann1.X5TZ4V Arachis hypogaea HOM05D002209 ORTHO05D007926 4.1e-78 295.4 242 62.0
AUR62033751 Chenopodium quinoa HOM05D002209 ORTHO05D007926 1.2e-77 293.9 254 60.6
arahy.Tifrunner.gnm1.ann1.IWL1UH Arachis hypogaea HOM05D002209 ORTHO05D007926 2.0e-77 293.1 247 61.1
arahy.Tifrunner.gnm1.ann1.A2QZNW Arachis hypogaea HOM05D002209 ORTHO05D007926 2.7e-77 292.7 242 61.2
PSO478G0876 Papaver somniferum HOM05D002209 ORTHO05D007926 3.5e-77 292.4 244 60.2
TPR.G12761 Trifolium pratense HOM05D002209 ORTHO05D007926 3.5e-77 292.4 247 59.5
arahy.Tifrunner.gnm1.ann1.7LX2IS Arachis hypogaea HOM05D002209 ORTHO05D007926 4.5e-77 292.0 247 61.1
MD14G1233600 Malus domestica HOM05D002209 ORTHO05D007926 6.5e-76 288.1 242 63.2
Aqoxy3G00431 Aquilegia oxysepala HOM05D002209 ORTHO05D007926 2.5e-75 286.2 256 57.8
CDE08G0043 Ceratophyllum demersum HOM05D002209 ORTHO05D007926 4.0e-73 278.9 236 58.5
Lalb_Chr16g0387151 Lupinus albus HOM05D002209 ORTHO05D007926 9.8e-72 274.2 219 61.6
HanXRQChr03g0090991 Helianthus annuus HOM05D002209 ORTHO05D007926 1.7e-71 273.5 237 60.8
COL.COLO4_07530 Corchorus olitorius HOM05D002209 ORTHO05D007926 3.7e-71 272.3 191 68.1
MBI13_g00575_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D007926 1.4e-70 270.4 248 57.3
Hund02335 Selenicereus undatus HOM05D002209 ORTHO05D007926 1.4e-70 270.4 254 55.9
unitig_27.g24963 Utricularia gibba HOM05D002209 ORTHO05D007926 2.4e-70 269.6 236 60.2
Ca_14628_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 4.1e-70 268.9 242 57.9
DCAR_011381 Daucus carota HOM05D002209 ORTHO05D007926 4.1e-70 268.9 246 56.9
HPP92_026682 Vanilla planifolia HOM05D002209 ORTHO05D007926 5.9e-69 265.0 242 56.6
Zm00001eb128260 Zea mays HOM05D002209 ORTHO05D007926 1.5e-67 260.4 239 56.9
Nn2g14536 Nelumbo nucifera HOM05D002209 ORTHO05D007926 2.5e-67 259.6 234 57.3
FAN13G0553 Fragaria x ananassa HOM05D002209 ORTHO05D007926 3.6e-66 255.8 239 58.2
RcHm_v2.0_Chr7g0178821 Rosa chinensis HOM05D002209 ORTHO05D007926 3.6e-66 255.8 241 56.8
FvH4_5g17030 Fragaria vesca HOM05D002209 ORTHO05D007926 6.1e-66 255.0 236 58.5
ATR0068G069 Amborella trichopoda HOM05D002209 ORTHO05D007926 8.0e-66 254.6 236 55.5
FAN08G0602 Fragaria x ananassa HOM05D002209 ORTHO05D007926 5.2e-65 251.9 236 57.6
FAN18G2854 Fragaria x ananassa HOM05D002209 ORTHO05D007926 2.0e-64 250.0 236 58.1
GSVIVG01008385001 Vitis vinifera HOM05D002209 ORTHO05D007926 3.4e-64 249.2 190 63.7
Mapoly0110s0002 Marchantia polymorpha HOM05D002209 ORTHO05D007926 2.2e-63 246.5 236 53.4
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 5.4e-62 241.9 242 54.1
vmacro16426 Vaccinium macrocarpon HOM05D002209 ORTHO05D007926 5.4e-62 241.9 323 45.5
Lj9A422G65 Lonicera japonica HOM05D002209 ORTHO05D007926 1.0e-60 237.7 207 60.9
Cc04_g06640 Coffea canephora HOM05D002209 ORTHO05D007926 6.6e-60 235.0 190 63.2
AagrBONN_evm.TU.Sc2ySwM_344.2039 Anthoceros agrestis HOM05D002209 ORTHO05D007926 2.6e-56 223.0 232 50.4
AUR62029954 Chenopodium quinoa HOM05D002209 ORTHO05D007926 9.8e-56 221.1 190 61.1
Pp3c9_17380 Physcomitrium patens HOM05D002209 ORTHO05D007926 4.9e-55 218.8 240 47.9
Dinv13547 Davidia involucrata HOM05D002209 ORTHO05D007926 7.3e-51 204.9 253 47.4
Oeu014368.1 Olea europaea HOM05D002209 ORTHO05D007926 1.7e-47 193.7 166 60.2
CBR_g46893 Chara braunii HOM05D006221 ORTHO05D007759 1.1e-46 191.0 221 48.0
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 7.0e-46 188.3 146 67.8
HPP92_018005 Vanilla planifolia HOM05D002209 ORTHO05D007926 6.6e-44 181.8 160 56.9
Hma1.2p1_1257F.1_g270860 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 7.3e-43 178.3 139 66.9
SMO339G0064 Selaginella moellendorffii HOM05D002209 ORTHO05D007926 9.5e-43 177.9 234 38.9
Psat7g003920 Pisum sativum HOM05D002209 ORTHO05D007926 1.5e-40 170.6 132 63.6
SEGI_33728 Sequoiadendron giganteum HOM05D002209 ORTHO05D007926 1.7e-36 157.1 131 61.8
BolC5t33212H Brassica oleracea HOM05D002209 ORTHO05D007926 9.9e-32 141.4 78 92.3
C05p44850 Brassica napus HOM05D002209 ORTHO05D007926 2.9e-31 139.8 91 81.3
Cre17.g697350 Chlamydomonas reinhardtii HOM05D002209 ORTHO05D007926 1.4e-25 120.9 230 33.9
MCO11G869 Micromonas commoda HOM05D002209 ORTHO05D007926 1.4e-25 120.9 228 32.5
Psat7g003960 Pisum sativum HOM05D002209 ORTHO05D007926 9.3e-22 108.2 80 66.2
A10p11050 Brassica napus HOM05D002209 ORTHO05D033214 1.3e-20 104.4 60 81.7
Ca_17308_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 1.3e-20 104.4 80 63.8
AUR62029953 Chenopodium quinoa HOM05D002209 ORTHO05D007926 1.8e-17 94.0 79 57.0
Ca_29797_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 4.2e-14 82.8 64 67.2
BraA10t43197Z Brassica rapa HOM05D002209 ORTHO05D033214 2.7e-13 80.1 47 80.9
BolC6t38528H Brassica oleracea HOM05D002209 ORTHO05D033214 6.0e-13 79.0 46 80.4


User provided reference genes

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