Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 1.5e-195 686.0 358 100.0
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 1.7e-186 656.0 344 99.4
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 5.4e-185 651.0 340 100.0
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 6.0e-184 647.5 340 99.1
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 3.5e-176 621.7 354 90.7
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.8e-165 585.5 355 84.2
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 9.0e-164 580.5 354 83.1
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 6.4e-162 574.3 361 82.8
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 8.4e-162 573.9 354 82.2
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 3.2e-161 572.0 364 83.5
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 7.9e-160 567.4 354 81.6
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 3.0e-159 565.5 359 82.7
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 2.8e-157 558.9 359 81.9
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 6.2e-157 557.8 358 81.6
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 2.4e-156 555.8 369 80.5
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 7.1e-153 544.3 363 80.4
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 1.6e-152 543.1 287 99.3
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.0e-146 523.9 361 77.0
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.4e-140 503.4 357 73.1
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 3.1e-140 502.3 361 73.1
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 2.6e-139 499.2 375 71.5
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 4.5e-139 498.4 360 72.2
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 4.5e-139 498.4 360 72.2
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 1.7e-138 496.5 361 72.6
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 2.5e-137 492.7 363 71.6
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 1.2e-136 490.3 361 71.2
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 2.3e-135 486.1 358 70.7
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.3e-135 486.1 367 69.8
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 3.9e-135 485.3 347 72.9
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 6.7e-135 484.6 358 70.4
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 7.4e-134 481.1 358 70.4
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 7.4e-134 481.1 363 69.1
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 5.0e-130 468.4 395 65.1
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 9.4e-129 464.2 388 64.7
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 9.7e-110 401.0 363 59.5
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 4.8e-109 398.7 363 59.0
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 8.2e-109 397.9 363 59.0
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 1.6e-107 393.7 364 58.5
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 5.9e-107 391.7 363 58.4
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 1.3e-106 390.6 363 57.6
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 1.7e-106 390.2 363 58.4
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 6.5e-106 388.3 363 57.3
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 1.1e-105 387.5 361 58.4
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 1.5e-105 387.1 364 58.2
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 7.2e-105 384.8 366 57.4
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.4e-105 384.4 366 56.6
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.4e-105 384.4 364 56.9
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 9.4e-105 384.4 365 58.1
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.6e-104 383.6 363 56.2
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.0e-103 380.9 364 56.9
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 3.0e-103 379.4 361 56.0
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 5.2e-103 378.6 362 56.6
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 5.2e-103 378.6 376 54.5
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 5.7e-102 375.2 370 54.9
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.8e-101 372.9 369 55.8
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 2.4e-100 369.8 366 57.7
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 7.0e-100 368.2 363 54.8
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 7.0e-100 368.2 361 55.1
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 1.2e-99 367.5 359 55.7
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 4.5e-99 365.5 363 54.3
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 5.9e-99 365.2 362 55.5
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.0e-98 364.4 365 52.6
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.9e-98 362.8 360 54.4
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 2.9e-98 362.8 361 52.6
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 3.8e-98 362.5 363 53.2
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 6.5e-98 361.7 365 53.7
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 8.6e-98 361.3 364 53.6
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 1.9e-97 360.1 361 54.0
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 7.2e-97 358.2 366 53.3
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 2.1e-96 356.7 364 53.6
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 3.6e-96 355.9 359 51.8
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.0e-95 354.4 365 53.2
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.0e-95 354.4 365 53.2
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 3.0e-95 352.8 362 51.9
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 8.9e-95 351.3 362 50.8
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.0e-94 350.1 359 52.9
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 2.0e-94 350.1 361 52.4
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 2.6e-94 349.7 362 53.0
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 9.8e-94 347.8 362 50.3
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 1.7e-93 347.1 363 51.0
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.7e-93 347.1 362 50.3
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 4.9e-93 345.5 362 49.7
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 8.3e-93 344.7 362 50.0
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 1.4e-92 344.0 361 50.1
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 2.4e-92 343.2 361 51.8
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 5.4e-92 342.0 361 49.9
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 9.2e-92 341.3 355 49.9
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 1.6e-91 340.5 361 51.8
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 1.0e-90 337.8 362 51.7
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 1.3e-90 337.4 362 50.8
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.9e-90 336.3 377 48.3
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 5.0e-90 335.5 363 52.1
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 1.1e-89 334.3 362 49.7
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 3.3e-89 332.8 360 51.4
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 9.5e-89 331.3 360 50.6
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 8.0e-88 328.2 403 46.7
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 1.8e-87 327.0 319 56.7
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 3.0e-87 326.2 359 48.7
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 4.0e-87 325.9 365 48.2
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.2e-87 325.5 383 48.6
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 6.8e-87 325.1 398 46.2
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.2e-86 324.3 369 49.1
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.5e-86 323.9 333 51.1
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 3.4e-86 322.8 362 47.8
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 3.4e-86 322.8 363 49.9
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 9.8e-86 321.2 305 57.0
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 3.7e-85 319.3 362 49.4
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 5.4e-84 315.5 365 47.1
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 5.4e-84 315.5 485 41.6
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 9.2e-84 314.7 351 50.4
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 1.2e-83 314.3 367 47.4
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 4.6e-83 312.4 284 58.8
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.7e-82 310.5 283 58.0
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 3.0e-82 309.7 389 44.0
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 1.9e-81 307.0 507 39.8
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 2.5e-81 306.6 362 47.2
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 5.6e-81 305.4 318 53.8
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.6e-80 303.9 311 52.7
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 2.6e-78 296.6 360 48.1
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 2.9e-77 293.1 370 46.8
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 2.9e-77 293.1 311 53.1
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 3.7e-77 292.7 355 43.4
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 7.8e-75 285.0 354 46.3
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.0e-74 283.1 317 50.8
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 5.0e-74 282.3 371 41.8
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.2e-70 271.2 366 42.1
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.5e-70 270.8 309 48.5
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.5e-70 270.8 305 48.9
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.2e-67 261.2 556 35.8
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.0e-66 256.5 206 62.6
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.6e-64 249.6 210 61.9
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 5.2e-63 245.7 208 58.2
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.5e-57 226.9 225 52.4
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 3.3e-57 226.5 470 32.3
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 4.3e-57 226.1 208 55.3
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.1e-55 221.5 165 69.1
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.0e-55 218.4 164 68.3
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.0e-54 217.2 165 68.5
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.4e-54 216.5 165 67.9
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 7.6e-54 215.3 165 67.9
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 7.6e-54 215.3 373 37.0
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 7.6e-54 215.3 313 39.0
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.3e-50 204.5 162 64.8
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 2.3e-50 203.8 165 61.8
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 6.6e-50 202.2 295 41.4
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.5e-49 201.1 165 65.5
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 5.6e-49 199.1 333 37.2
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 5.3e-47 192.6 310 39.0
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.3e-45 188.0 373 35.1
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 6.4e-45 185.7 380 34.2
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.1e-41 174.9 155 56.8
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 3.3e-41 173.3 379 34.3
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 7.4e-41 172.2 370 31.4
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.6e-41 171.8 203 48.3
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 1.3e-40 171.4 198 50.0
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.8e-40 170.2 203 47.8
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 1.4e-39 167.9 369 32.8
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.4e-39 167.2 229 47.2
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 7.6e-38 162.2 286 38.5
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.3e-34 151.4 205 41.5
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 3.0e-34 150.2 368 29.6
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 5.1e-34 149.4 197 41.1
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.5e-33 147.9 126 61.1
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.8e-32 142.9 110 68.2
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 3.4e-30 136.7 126 54.0
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.9e-29 132.9 152 51.3
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 3.7e-24 116.7 156 42.3
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.1e-23 115.2 161 44.1
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 5.3e-23 112.8 130 43.8
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 5.3e-23 112.8 156 41.0
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 2.7e-19 100.5 168 36.3
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 3.6e-19 100.1 133 43.6
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 9.7e-17 92.0 244 29.9
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 1.1e-15 88.6 134 42.5
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 6.9e-15 85.9 134 41.0
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.6e-14 84.0 268 32.1
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 5.1e-10 69.7 419 23.2


User provided reference genes

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