Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 3.6e-202 708.0 345 100.0
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 1.2e-200 703.0 347 99.4
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 1.2e-200 703.0 347 99.4
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 1.0e-185 653.3 351 93.4
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 6.6e-180 634.0 351 91.5
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 2.9e-167 592.0 354 84.2
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 2.9e-167 592.0 354 84.2
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 4.9e-167 591.3 355 83.4
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 1.9e-166 589.3 354 84.2
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 2.7e-165 585.5 357 83.5
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 5.6e-163 577.8 357 81.0
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 9.6e-163 577.0 353 83.6
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 3.6e-162 575.1 357 81.5
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 3.6e-162 575.1 357 81.8
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 7.6e-160 567.4 352 80.1
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 1.4e-153 546.6 355 76.9
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 3.4e-152 542.0 349 76.2
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.1e-150 537.0 355 75.5
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 6.7e-148 527.7 356 73.6
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 4.8e-130 468.4 345 68.1
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 2.4e-113 412.9 359 59.3
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 2.0e-112 409.8 320 63.1
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 8.5e-111 404.4 293 66.2
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 1.4e-110 403.7 310 64.2
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 1.6e-109 400.2 322 59.9
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 6.1e-109 398.3 288 64.6
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 6.1e-109 398.3 312 62.5
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 7.9e-109 397.9 345 57.1
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 2.3e-108 396.4 352 56.8
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.3e-108 396.4 354 55.6
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 3.9e-108 395.6 309 62.8
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 4.4e-107 392.1 310 62.6
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 5.7e-107 391.7 355 56.9
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 9.7e-107 391.0 323 61.0
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 9.7e-107 391.0 349 57.0
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 2.2e-106 389.8 347 55.6
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 3.7e-106 389.0 346 57.8
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 8.2e-106 387.9 294 64.3
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 1.1e-105 387.5 320 60.9
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 1.8e-105 386.7 350 58.3
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 1.8e-105 386.7 311 60.5
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 3.1e-105 386.0 329 57.8
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 9.1e-105 384.4 346 57.8
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 1.2e-104 384.0 279 64.5
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 1.2e-104 384.0 297 63.0
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 4.5e-104 382.1 293 63.5
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 5.9e-104 381.7 326 57.7
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 7.7e-104 381.3 326 58.0
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 7.7e-104 381.3 297 62.6
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 1.3e-103 380.6 319 59.2
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 2.9e-103 379.4 317 59.0
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 2.9e-103 379.4 319 58.0
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 3.8e-103 379.0 319 58.3
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 5.0e-103 378.6 289 63.0
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 6.5e-103 378.3 350 57.4
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 2.5e-102 376.3 316 59.2
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 4.2e-102 375.6 308 61.0
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 7.2e-102 374.8 311 57.9
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 9.4e-102 374.4 300 59.7
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 1.6e-101 373.6 319 59.9
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 1.6e-101 373.6 311 57.9
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 2.1e-101 373.2 300 59.7
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 2.7e-101 372.9 305 58.4
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 3.6e-101 372.5 292 62.3
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 3.6e-101 372.5 291 59.8
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 4.7e-101 372.1 287 62.0
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 6.1e-101 371.7 318 59.7
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 1.8e-100 370.2 293 62.5
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 1.8e-100 370.2 290 60.3
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 2.3e-100 369.8 286 61.9
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 2.3e-100 369.8 326 56.4
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 3.0e-100 369.4 337 56.4
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 4.0e-100 369.0 311 60.8
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 5.7e-99 365.2 320 55.9
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 7.5e-99 364.8 317 58.7
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 1.3e-98 364.0 333 56.2
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 2.8e-98 362.8 310 57.4
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 3.7e-98 362.5 286 60.5
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 4.8e-98 362.1 292 58.6
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 9.1e-97 357.8 330 53.6
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 1.2e-96 357.5 373 50.1
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.7e-96 356.3 283 60.1
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 1.3e-95 354.0 353 53.3
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 1.3e-95 354.0 313 57.2
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 3.2e-94 349.4 319 54.9
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 2.1e-93 346.7 329 53.5
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 3.6e-93 345.9 332 52.4
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 6.8e-92 341.7 265 60.4
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.5e-91 340.5 343 51.9
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 1.5e-91 340.5 298 56.0
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 7.5e-91 338.2 290 56.2
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 3.1e-89 332.8 260 62.3
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 4.5e-88 328.9 244 64.3
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 4.5e-88 328.9 249 63.9
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 4.5e-88 328.9 247 62.3
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 1.0e-87 327.8 257 63.0
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 2.2e-87 326.6 296 57.1
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 1.9e-86 323.6 255 61.6
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 2.5e-86 323.2 285 56.1
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 5.5e-86 322.0 321 54.2
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 6.3e-82 308.5 284 56.0
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 3.5e-80 302.8 255 58.4
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 4.5e-80 302.4 238 58.8
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 2.1e-77 293.5 221 61.1
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 2.8e-77 293.1 399 41.9
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 3.0e-76 289.7 225 60.9
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 4.0e-76 289.3 222 64.0
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 1.5e-70 270.8 293 50.5
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 2.8e-69 266.5 298 47.0
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 3.1e-68 263.1 298 49.3
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 1.9e-65 253.8 198 59.6
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 3.0e-63 246.5 290 43.1
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 1.1e-62 244.6 241 54.4
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 1.1e-62 244.6 313 40.6
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 2.1e-61 240.4 264 48.9
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.9e-57 227.3 180 60.0
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 2.1e-56 223.8 179 64.2
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 6.0e-56 222.2 312 42.6
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 1.9e-54 217.2 307 42.7
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 8.1e-53 211.8 320 41.9
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 2.6e-51 206.8 160 58.1
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 1.7e-50 204.1 163 60.1
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 3.2e-49 199.9 251 41.8
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 2.5e-46 190.3 238 44.1
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 1.4e-41 174.5 378 31.5
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 2.1e-40 170.6 130 58.5
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 1.5e-35 154.5 332 30.7
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 2.4e-33 147.1 92 66.3
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.8e-31 141.0 154 52.6
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 3.9e-31 139.8 118 55.9
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.5e-30 137.9 168 47.6
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 2.0e-27 127.5 135 48.9
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 4.0e-20 103.2 340 25.6
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 2.3e-15 87.4 205 30.7
MCO16G342 Micromonas commoda HOM05D005585 ORTHO05D006905 3.4e-11 73.6 223 25.1
Cfa024306 Carpinus fangiana HOM05D005585 ORTHO05D006905 2.9e-10 70.5 251 25.5
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 7.4e-06 55.8 78 43.6


User provided reference genes

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