Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1581.6 829 100.0
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1565.1 832 99.0
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1547.3 832 98.2
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1450.6 832 91.2
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1448.0 831 90.9
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 0.0e+00 1368.6 856 85.7
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1366.3 840 86.7
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 0.0e+00 1342.4 852 84.6
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 0.0e+00 1320.4 852 82.2
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 0.0e+00 1318.1 852 82.0
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 0.0e+00 1308.9 848 81.6
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 0.0e+00 1286.2 850 80.5
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1280.0 848 83.7
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1276.5 844 84.5
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1268.8 845 84.3
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 0.0e+00 1228.0 904 72.9
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1221.5 849 80.7
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1179.1 844 79.4
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1120.1 722 84.2
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 0.0e+00 1094.3 853 68.1
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 5.7e-254 881.3 865 56.8
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 1.7e-253 879.8 868 56.9
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 3.7e-253 878.6 868 56.8
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 2.9e-250 869.0 873 56.5
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 3.7e-245 852.0 827 58.6
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 2.4e-244 849.4 865 55.1
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 5.3e-244 848.2 824 58.5
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 1.2e-243 847.0 824 56.6
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.0e-242 844.0 889 54.2
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.2e-242 842.8 865 54.9
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 8.5e-242 840.9 863 54.7
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 8.5e-242 840.9 855 57.1
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 1.1e-241 840.5 833 58.3
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 1.5e-241 840.1 870 56.1
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 4.2e-241 838.6 848 55.4
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 2.3e-239 832.8 873 54.6
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 6.8e-239 831.2 825 57.8
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 8.8e-239 830.9 825 57.9
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.0e-238 829.7 835 57.6
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 2.6e-238 829.3 866 55.4
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.4e-238 828.9 854 54.9
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 5.7e-238 828.2 876 54.3
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 7.5e-238 827.8 971 50.5
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 8.3e-237 824.3 858 54.5
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.1e-236 823.9 825 57.2
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 2.2e-234 816.2 856 53.7
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.9e-234 815.8 838 56.9
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.4e-231 807.0 911 52.8
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 4.0e-231 805.4 854 53.3
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 5.2e-231 805.1 770 58.4
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 1.5e-230 803.5 873 52.2
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.6e-227 793.5 864 52.7
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 2.0e-227 793.1 868 54.0
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 2.0e-227 793.1 863 53.3
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 3.5e-227 792.3 879 51.9
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.3e-226 790.4 876 53.1
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 9.5e-225 784.3 866 53.8
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 9.5e-225 784.3 830 53.0
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 2.1e-224 783.1 822 53.3
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.8e-224 782.7 877 51.9
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 6.1e-224 781.6 862 52.0
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 1.8e-223 780.0 870 52.4
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 2.3e-223 779.6 875 53.0
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 4.0e-223 778.9 858 52.3
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 1.2e-222 777.3 824 53.9
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 1.5e-222 776.9 842 52.6
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 2.0e-222 776.5 869 52.6
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 5.7e-222 775.0 874 52.1
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 9.2e-220 767.7 878 51.7
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 1.6e-219 766.9 855 52.9
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 2.7e-219 766.1 894 49.9
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 4.6e-219 765.4 820 53.5
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 5.9e-219 765.0 835 53.1
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 1.3e-218 763.8 827 52.6
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 2.8e-216 756.1 834 52.6
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 8.0e-216 754.6 825 53.9
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 1.0e-215 754.2 867 50.9
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.4e-215 753.8 855 51.2
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.8e-215 753.4 874 50.8
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.3e-215 753.1 846 52.2
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 2.0e-214 750.0 757 56.3
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 2.6e-214 749.6 859 51.1
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 2.6e-214 749.6 874 51.5
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 9.8e-214 747.7 738 57.2
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 3.7e-213 745.7 943 48.3
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 8.3e-213 744.6 835 51.9
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 1.1e-212 744.2 880 49.4
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.2e-211 740.7 957 48.1
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 2.3e-210 736.5 880 50.9
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 1.1e-209 734.2 855 49.7
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 1.5e-209 733.8 777 53.9
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.2e-208 730.7 860 50.5
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.8e-208 729.6 844 50.9
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 1.1e-207 727.6 866 49.8
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 1.4e-207 727.2 867 50.4
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.0e-206 723.4 862 49.9
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 8.3e-205 718.0 865 50.8
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.4e-204 716.5 834 50.6
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 1.2e-203 714.1 693 57.9
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.2e-203 714.1 791 53.1
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 3.9e-202 709.1 827 50.1
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 3.3e-201 706.1 823 51.0
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.6e-200 703.7 761 52.8
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.3e-194 684.1 874 47.1
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.7e-194 683.7 863 47.9
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.1e-193 681.0 717 53.8
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 8.1e-192 674.9 852 48.4
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 2.4e-191 673.3 555 66.5
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 4.9e-189 665.6 785 49.9
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 2.1e-184 650.2 720 51.8
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 4.5e-182 642.5 797 45.9
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 4.5e-182 642.5 793 48.9
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.7e-181 640.6 812 48.0
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 5.4e-180 635.6 835 45.1
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 2.1e-176 623.6 847 45.9
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 7.6e-174 615.1 605 55.5
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 1.2e-171 607.8 774 47.2
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 8.2e-160 568.5 552 56.9
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 1.8e-159 567.4 851 43.6
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 9.0e-159 565.1 875 43.2
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 3.4e-158 563.1 918 40.6
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.0e-149 535.0 448 65.4
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 8.5e-149 531.9 786 42.4
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 6.7e-146 522.3 826 41.5
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 2.6e-142 510.4 873 40.1
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 4.5e-142 509.6 800 41.9
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 1.1e-137 495.0 916 38.1
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 2.0e-134 484.2 738 42.8
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 5.0e-133 479.6 746 39.5
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 3.5e-126 456.8 907 36.4
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 6.5e-125 452.6 492 52.0
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 8.5e-125 452.2 486 51.9
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 1.3e-109 401.7 551 46.8
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 4.9e-104 383.3 815 34.6
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 1.2e-99 368.6 624 37.2
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 4.4e-97 360.1 553 40.5
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 1.1e-90 339.0 703 34.1
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 3.1e-82 310.8 440 45.0
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 1.9e-76 291.6 435 45.5
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 5.2e-74 283.5 435 45.3
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 5.2e-74 283.5 435 45.3
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 3.8e-72 277.3 365 47.7
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 3.4e-65 254.2 259 57.1
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 3.9e-61 240.7 311 48.2
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 2.6e-57 228.0 178 68.0
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 2.6e-57 228.0 178 68.0
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.2e-56 224.9 282 47.9
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.5e-44 185.7 195 56.4
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 6.3e-43 180.3 188 56.9
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.2e-41 176.0 247 44.1
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 1.7e-35 155.6 144 59.0
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 2.2e-35 155.2 178 53.4
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 9.1e-34 149.8 176 52.3
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 4.5e-33 147.5 132 63.6
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 2.9e-32 144.8 138 54.3
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 5.5e-23 114.0 212 40.1
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 3.0e-21 108.2 358 27.9
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 2.2e-16 92.0 85 60.0
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 4.7e-14 84.3 60 70.0
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 5.2e-13 80.9 105 39.0
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-11 75.9 219 25.1
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 1.1e-10 73.2 159 34.0
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 1.8e-10 72.4 36 94.4
BolC2t11814H Brassica oleracea HOM05D004054 ORTHO05D004945 1.8e-10 72.4 139 39.6
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.8e-10 72.4 63 55.6
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 1.8e-10 72.4 58 58.6
BolC3t17207H Brassica oleracea HOM05D004054 ORTHO05D004945 4.1e-10 71.2 41 78.0
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-08 65.1 47 63.8
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 2.7e-06 58.5 86 43.0
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 2.7e-06 58.5 104 39.4


User provided reference genes

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