Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48707 Brassica carinata HOM05D002272 ORTHO05D005405 2.6e-55 218.4 103 100.0
BolC1t04644H Brassica oleracea HOM05D002272 ORTHO05D040789 6.6e-43 177.2 99 84.8
C01p46730 Brassica napus HOM05D002272 ORTHO05D040789 1.1e-40 169.9 107 81.3
C01p46710 Brassica napus HOM05D002272 ORTHO05D005405 3.0e-35 151.8 71 100.0
BolC1t04639H Brassica oleracea HOM05D002272 ORTHO05D005405 3.0e-35 151.8 71 100.0
BcaB04g20838 Brassica carinata HOM05D002272 ORTHO05D005405 4.3e-34 147.9 71 97.2
A01p36790 Brassica napus HOM05D002272 ORTHO05D005405 7.3e-34 147.1 72 98.6
BraA01t03740Z Brassica rapa HOM05D002272 ORTHO05D005405 7.3e-34 147.1 72 98.6
Carub.0003s1719 Capsella rubella HOM05D002272 ORTHO05D005405 2.8e-33 145.2 71 97.2
Thhalv10021142m.g Eutrema salsugineum HOM05D002272 ORTHO05D005405 3.6e-33 144.8 71 97.2
Sp3g15640 Schrenkiella parvula HOM05D002272 ORTHO05D005405 8.1e-33 143.7 71 95.8
BcaB04g18943 Brassica carinata HOM05D002272 ORTHO05D005405 1.8e-32 142.5 71 94.4
BcaB06g25841 Brassica carinata HOM05D002272 ORTHO05D005405 2.3e-32 142.1 71 94.4
BcaC05g28788 Brassica carinata HOM05D002272 ORTHO05D005405 4.0e-32 141.4 71 95.8
A05p32330 Brassica napus HOM05D002272 ORTHO05D005405 4.0e-32 141.4 71 95.8
C05p48970 Brassica napus HOM05D002272 ORTHO05D005405 4.0e-32 141.4 71 95.8
BolC5t33637H Brassica oleracea HOM05D002272 ORTHO05D005405 4.0e-32 141.4 71 95.8
BraA05t22061Z Brassica rapa HOM05D002272 ORTHO05D005405 4.0e-32 141.4 71 95.8
BcaNung06481 Brassica carinata HOM05D002272 ORTHO05D005405 5.2e-32 141.0 66 100.0
AL3G30550 Arabidopsis lyrata HOM05D002272 ORTHO05D005405 6.8e-32 140.6 71 94.4
AT3G17465 Arabidopsis thaliana HOM05D002272 ORTHO05D005405 6.8e-32 140.6 71 94.4
CARHR092790 Cardamine hirsuta HOM05D002272 ORTHO05D005405 9.9e-31 136.7 71 88.7
FvH4_4g21510 Fragaria vesca HOM05D002272 ORTHO05D005405 1.3e-30 136.3 71 88.7
FAN12G3762 Fragaria x ananassa HOM05D002272 ORTHO05D005405 1.3e-30 136.3 71 88.7
RcHm_v2.0_Chr4g0427531 Rosa chinensis HOM05D002272 ORTHO05D005405 1.3e-30 136.3 71 88.7
FAN07G0753 Fragaria x ananassa HOM05D002272 ORTHO05D005405 2.2e-30 135.6 71 88.7
FAN17G2520 Fragaria x ananassa HOM05D002272 ORTHO05D005405 2.2e-30 135.6 71 88.7
MD13G1139500 Malus domestica HOM05D002272 ORTHO05D005405 2.9e-30 135.2 71 85.9
Cfa015730 Carpinus fangiana HOM05D002272 ORTHO05D005405 1.9e-29 132.5 71 85.9
MD16G1136200 Malus domestica HOM05D002272 ORTHO05D005405 2.4e-29 132.1 71 84.5
CSS0028739 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 5.4e-29 131.0 71 85.9
CSS0045814 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 5.4e-29 131.0 71 85.9
Haze_00766 Corylus avellana HOM05D002272 ORTHO05D005405 5.4e-29 131.0 68 88.2
Eucgr.H04124 Eucalyptus grandis HOM05D002272 ORTHO05D005405 1.2e-28 129.8 71 81.7
Dinv29507 Davidia involucrata HOM05D002272 ORTHO05D005405 2.1e-28 129.0 71 84.5
QL06p014217 Quercus lobata HOM05D002272 ORTHO05D005405 2.1e-28 129.0 70 81.4
Thecc.04G313100 Theobroma cacao HOM05D002272 ORTHO05D005405 2.1e-28 129.0 71 81.7
MBI13_g24903_MAGBIO Magnolia biondii HOM05D002272 ORTHO05D005405 2.7e-28 128.6 71 84.5
Prupe.1G105200 Prunus persica HOM05D002272 ORTHO05D005405 2.7e-28 128.6 71 84.5
Sc18g0007250 Simmondsia chinensis HOM05D002272 ORTHO05D005405 2.7e-28 128.6 71 80.3
Nn4g26701 Nelumbo nucifera HOM05D002272 ORTHO05D005405 3.5e-28 128.3 71 81.7
THA.LOC104815360 Tarenaya hassleriana HOM05D002272 ORTHO05D005405 3.5e-28 128.3 71 81.7
Lj6A701G45 Lonicera japonica HOM05D002272 ORTHO05D005405 4.6e-28 127.9 71 80.3
CiPaw.02G069200 Carya illinoinensis HOM05D002272 ORTHO05D005405 6.0e-28 127.5 71 83.1
CANSAT78G0846 Cannabis sativa HOM05D002272 ORTHO05D005405 7.8e-28 127.1 71 81.7
Actinidia18507 Actinidia chinensis HOM05D002272 ORTHO05D005405 1.0e-27 126.7 71 81.7
Oeu012217.1 Olea europaea HOM05D002272 ORTHO05D005405 1.0e-27 126.7 71 80.3
Sed0028101 Sechium edule HOM05D002272 ORTHO05D005405 1.7e-27 125.9 71 83.1
Hma1.2p1_0013F.1_g007910 Hydrangea macrophylla HOM05D002272 ORTHO05D005405 3.0e-27 125.2 71 80.3
Solyc03g117320.4 Solanum lycopersicum HOM05D002272 ORTHO05D005405 3.0e-27 125.2 71 78.9
Sopen03g036210 Solanum pennellii HOM05D002272 ORTHO05D005405 3.0e-27 125.2 71 78.9
SGA_v2.0_scaffold157G37389 Striga asiatica HOM05D002272 ORTHO05D005405 3.0e-27 125.2 71 78.9
CiPaw.01G129200 Carya illinoinensis HOM05D002272 ORTHO05D005405 5.1e-27 124.4 71 80.3
Dinv18018 Davidia involucrata HOM05D002272 ORTHO05D005405 5.1e-27 124.4 71 81.7
HPP92_026061 Vanilla planifolia HOM05D002272 ORTHO05D005405 5.1e-27 124.4 71 77.5
Migut.G00004 Erythranthe guttata HOM05D002272 ORTHO05D005405 6.6e-27 124.0 71 77.5
Migut.O00400 Erythranthe guttata HOM05D002272 ORTHO05D005405 6.6e-27 124.0 71 77.5
PSO210G1506 Papaver somniferum HOM05D002272 ORTHO05D005405 6.6e-27 124.0 71 78.9
PGR004G1245 Punica granatum HOM05D002272 ORTHO05D005405 8.6e-27 123.6 71 78.9
PGSC0003DMG400014202 Solanum tuberosum HOM05D002272 ORTHO05D005405 8.6e-27 123.6 71 77.5
PSO761G0243 Papaver somniferum HOM05D002272 ORTHO05D005405 1.1e-26 123.2 71 78.9
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 1.5e-26 122.9 61 93.4
EL10Ac5g11978 Beta vulgaris HOM05D002272 ORTHO05D005405 1.5e-26 122.9 71 76.1
Hund04488 Selenicereus undatus HOM05D002272 ORTHO05D005405 1.5e-26 122.9 71 76.1
GSVIVG01017688001 Vitis vinifera HOM05D002272 ORTHO05D005405 1.5e-26 122.9 71 77.5
Gohir.D02G064300 Gossypium hirsutum HOM05D002272 ORTHO05D005405 1.9e-26 122.5 71 77.5
SalBow8G2239 Salvia bowleyana HOM05D002272 ORTHO05D005405 1.9e-26 122.5 71 76.1
TWI75G1791 Tripterygium wilfordii HOM05D002272 ORTHO05D005405 1.9e-26 122.5 71 77.5
Cpa.g.sc146.23 Carica papaya HOM05D002272 ORTHO05D005405 3.3e-26 121.7 71 77.5
Cc03_g00130 Coffea canephora HOM05D002272 ORTHO05D005405 3.3e-26 121.7 78 71.8
DCAR_002551 Daucus carota HOM05D002272 ORTHO05D005405 4.3e-26 121.3 71 78.9
Phvul.005G012100 Phaseolus vulgaris HOM05D002272 ORTHO05D005405 4.3e-26 121.3 71 76.1
Rhsim04G0248300 Rhododendron simsii HOM05D002272 ORTHO05D005405 4.3e-26 121.3 71 78.9
Ah.07g201130 Amaranthus hybridus HOM05D002272 ORTHO05D005405 5.6e-26 120.9 71 77.5
MSTRG.10168 Avicennia marina HOM05D002272 ORTHO05D005405 5.6e-26 120.9 81 69.1
HanXRQChr05g0149261 Helianthus annuus HOM05D002272 ORTHO05D005405 5.6e-26 120.9 71 78.9
Hund14390 Selenicereus undatus HOM05D002272 ORTHO05D005405 5.6e-26 120.9 71 74.6
Aqoxy5G02803 Aquilegia oxysepala HOM05D002272 ORTHO05D005405 7.3e-26 120.6 71 76.1
Ciclev10007196m.g Citrus clementina HOM05D002272 ORTHO05D005405 7.3e-26 120.6 70 78.6
CDE01G0715 Ceratophyllum demersum HOM05D002272 ORTHO05D005405 9.5e-26 120.2 71 73.2
AUR62007379 Chenopodium quinoa HOM05D002272 ORTHO05D005405 9.5e-26 120.2 71 73.2
AUR62018609 Chenopodium quinoa HOM05D002272 ORTHO05D005405 9.5e-26 120.2 71 73.2
TAR636G1706 Trochodendron aralioides HOM05D002272 ORTHO05D005405 9.5e-26 120.2 71 77.5
VMungo1080G0714 Vigna mungo HOM05D002272 ORTHO05D005405 9.5e-26 120.2 71 76.1
Lalb_Chr04g0247221 Lupinus albus HOM05D002272 ORTHO05D005405 1.2e-25 119.8 71 74.6
PSO541G1920 Papaver somniferum HOM05D002272 ORTHO05D005405 1.2e-25 119.8 86 67.4
vmacro08012 Vaccinium macrocarpon HOM05D002272 ORTHO05D005405 1.2e-25 119.8 71 78.9
Medtr6g006970 Medicago truncatula HOM05D002272 ORTHO05D005405 1.6e-25 119.4 71 73.2
Glyma.12G225000 Glycine max HOM05D002272 ORTHO05D005405 2.1e-25 119.0 71 74.6
Gorai.005G072600 Gossypium raimondii HOM05D002272 ORTHO05D005405 2.1e-25 119.0 71 74.6
Lsat_1_v5_gn_6_118081 Lactuca sativa HOM05D002272 ORTHO05D005405 2.1e-25 119.0 71 76.1
Lj3g0022905 Lotus japonicus HOM05D002272 ORTHO05D005405 2.1e-25 119.0 71 74.6
Medtr2g090370 Medicago truncatula HOM05D002272 ORTHO05D005405 2.1e-25 119.0 77 70.1
CDE12G0965 Ceratophyllum demersum HOM05D002272 ORTHO05D005405 3.6e-25 118.2 71 71.8
Glyma.13G276300 Glycine max HOM05D002272 ORTHO05D005405 3.6e-25 118.2 71 74.6
unitig_8.g3105 Utricularia gibba HOM05D002272 ORTHO05D005405 3.6e-25 118.2 71 71.8
ATR0796G018 Amborella trichopoda HOM05D002272 ORTHO05D005405 4.7e-25 117.9 71 77.5
Ca_06467_v3 Cicer arietinum L. HOM05D002272 ORTHO05D005405 4.7e-25 117.9 71 73.2
COL.COLO4_34516 Corchorus olitorius HOM05D002272 ORTHO05D005405 6.2e-25 117.5 71 74.6
Psat1g056160 Pisum sativum HOM05D002272 ORTHO05D005405 6.2e-25 117.5 71 71.8
TPR.G2257 Trifolium pratense HOM05D002272 ORTHO05D005405 6.2e-25 117.5 71 71.8
TAR365G0404 Trochodendron aralioides HOM05D002272 ORTHO05D005405 6.2e-25 117.5 71 74.6
arahy.Tifrunner.gnm1.ann1.E0PE5U Arachis hypogaea HOM05D002272 ORTHO05D005405 8.1e-25 117.1 71 74.6
ECA246G1461 Erigeron canadensis HOM05D002272 ORTHO05D005405 1.1e-24 116.7 71 74.6
Potri.008G207000 Populus trichocarpa HOM05D002272 ORTHO05D005405 1.8e-24 115.9 71 76.1
TPR.G18850 Trifolium pratense HOM05D002272 ORTHO05D005405 1.8e-24 115.9 71 71.8
C03p48850 Brassica napus HOM05D002272 ORTHO05D005405 2.4e-24 115.5 61 90.2
arahy.Tifrunner.gnm1.ann1.Z0DKXY Arachis hypogaea HOM05D002272 ORTHO05D005405 3.1e-24 115.2 71 73.2
ClCG05G006870 Citrullus lanatus HOM05D002272 ORTHO05D005405 3.1e-24 115.2 71 76.1
Manes.02G178300 Manihot esculenta HOM05D002272 ORTHO05D005405 4.0e-24 114.8 71 76.1
Potri.010G002300 Populus trichocarpa HOM05D002272 ORTHO05D005405 6.8e-24 114.0 71 76.1
C03p48820 Brassica napus HOM05D002272 ORTHO05D005405 8.9e-24 113.6 59 93.2
BolC3t17164H Brassica oleracea HOM05D002272 ORTHO05D005405 8.9e-24 113.6 59 93.2
Peaxi162Scf00126g01027 Petunia axillaris HOM05D002272 ORTHO05D005405 8.9e-24 113.6 71 74.6
Sabra10G0001800 Salix brachista HOM05D002272 ORTHO05D005405 8.9e-24 113.6 71 76.1
Medtr1g093060 Medicago truncatula HOM05D002272 ORTHO05D005405 1.5e-23 112.8 71 69.0
Nitab4.5_0001437g0040 Nicotiana tabacum HOM05D002272 ORTHO05D005405 1.5e-23 112.8 71 76.1
Nitab4.5_0005622g0030 Nicotiana tabacum HOM05D002272 ORTHO05D005405 1.5e-23 112.8 71 76.1
Sed0025255 Sechium edule HOM05D002272 ORTHO05D005405 1.5e-23 112.8 71 73.2
Atru.chr4.3151 Acer truncatum HOM05D002272 ORTHO05D005405 3.4e-23 111.7 71 73.2
Duzib212G0306 Durio zibethinus HOM05D002272 ORTHO05D005405 3.4e-23 111.7 71 73.2
BcaC01g03762 Brassica carinata HOM05D002272 ORTHO05D005405 9.9e-23 110.2 58 91.4
Nitab4.5_0002322g0100 Nicotiana tabacum HOM05D002272 ORTHO05D005405 9.9e-23 110.2 70 72.9
Rhsim10G0078600 Rhododendron simsii HOM05D002272 ORTHO05D005405 2.2e-22 109.0 62 80.6
CsaV3_3G015540 Cucumis sativus L. HOM05D002272 ORTHO05D005405 1.9e-21 105.9 72 70.8
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 1.9e-21 105.9 72 70.8
MELO3C006752.2 Cucumis melo HOM05D002272 ORTHO05D005405 3.2e-21 105.1 72 69.4
Sopen01g021790 Solanum pennellii HOM05D002272 ORTHO05D005405 3.2e-21 105.1 74 66.2
Mapoly0162s0018 Marchantia polymorpha HOM05D002272 ORTHO05D005405 4.2e-21 104.8 67 67.2
Oeu037631.1 Olea europaea HOM05D002272 ORTHO05D005405 1.6e-20 102.8 68 69.1
SEGI_24146 Sequoiadendron giganteum HOM05D002272 ORTHO05D005405 2.1e-20 102.4 77 62.3
CAN.G407.30 Capsicum annuum HOM05D002272 ORTHO05D005405 6.0e-20 100.9 60 76.7
Os01g0251100 Oryza sativa ssp. japonica HOM05D002272 ORTHO05D005405 1.3e-19 99.8 78 60.3
SMO119G0282 Selaginella moellendorffii HOM05D002272 ORTHO05D005405 5.1e-19 97.8 70 58.6
Pp3c23_18210 Physcomitrium patens HOM05D002272 ORTHO05D005405 1.1e-18 96.7 67 67.2
Actinidia01065 Actinidia chinensis HOM05D002272 ORTHO05D005405 3.3e-18 95.1 48 87.5
PGSC0003DMG402013065 Solanum tuberosum HOM05D002272 ORTHO05D005405 4.3e-18 94.7 59 72.9
Sabra08G0150200 Salix brachista HOM05D002272 ORTHO05D005405 2.3e-11 72.4 39 79.5
CBR_g27892 Chara braunii HOM05D002272 ORTHO05D005405 1.1e-10 70.1 67 50.7


User provided reference genes

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