Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 2.6e-92 342.0 172 100.0
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 2.6e-92 342.0 172 100.0
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 2.1e-78 295.8 152 96.1
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 1.6e-62 243.0 173 78.0
A01p36890 Brassica napus HOM05D003268 ORTHO05D003719 1.6e-62 243.0 168 79.2
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 1.6e-62 243.0 173 78.0
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 1.6e-62 243.0 173 78.0
BraA01t03748Z Brassica rapa HOM05D003268 ORTHO05D003719 1.8e-61 239.6 168 78.0
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.4e-53 213.4 192 63.0
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 1.5e-52 209.9 172 70.3
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 4.2e-50 201.8 193 59.1
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 1.8e-40 169.9 189 52.9
AL3G30540 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 6.7e-40 167.9 192 53.1
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 5.6e-39 164.9 192 51.6
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 1.8e-37 159.8 174 52.3
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 4.5e-36 155.2 165 54.5
C05p48980 Brassica napus HOM05D003268 ORTHO05D003719 1.7e-35 153.3 179 52.5
BolC5t33638H Brassica oleracea HOM05D003268 ORTHO05D003719 1.7e-35 153.3 179 52.5
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 2.9e-35 152.5 199 46.7
AT3G17460 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 2.9e-35 152.5 186 49.5
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 8.4e-35 151.0 185 45.9
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 4.6e-33 145.2 177 50.8
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 2.3e-32 142.9 182 46.7
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 1.6e-30 136.7 185 44.3
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.4e-29 133.7 193 43.0
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 1.4e-29 133.7 193 43.0
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 3.1e-29 132.5 185 43.2
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 6.9e-29 131.3 193 42.5
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 9.0e-29 131.0 190 42.1
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 1.3e-27 127.1 177 44.6
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 1.9e-26 123.2 166 41.0
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 1.9e-26 123.2 192 37.5
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 4.2e-26 122.1 178 42.1
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 4.6e-25 118.6 180 40.6
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 2.3e-24 116.3 165 42.4
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 3.0e-24 115.9 178 39.9
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 8.7e-24 114.4 155 43.2
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 5.7e-23 111.7 159 40.9
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 1.3e-22 110.5 154 41.6
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.3e-22 110.5 154 41.6
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 1.3e-22 110.5 194 38.7
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 3.7e-22 109.0 177 36.2
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 4.8e-22 108.6 179 36.9
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 8.2e-22 107.8 154 40.9
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 2.4e-21 106.3 168 36.3
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 3.1e-21 105.9 131 43.5
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 3.1e-21 105.9 131 42.7
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 3.1e-21 105.9 183 38.3
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 4.1e-21 105.5 163 38.0
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 5.3e-21 105.1 193 37.3
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 2.0e-20 103.2 183 37.7
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 1.3e-19 100.5 177 37.9
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 1.3e-19 100.5 177 37.3
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 1.7e-19 100.1 168 38.7
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 1.7e-19 100.1 155 40.0
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 1.7e-19 100.1 184 31.5
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 1.7e-19 100.1 170 35.3
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 2.9e-19 99.4 170 37.6
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.9e-19 99.4 163 36.2
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 5.0e-19 98.6 182 34.1
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 5.0e-19 98.6 169 35.5
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 5.0e-19 98.6 154 39.0
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 6.5e-19 98.2 186 37.1
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 6.5e-19 98.2 154 38.3
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 8.5e-19 97.8 184 35.3
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 1.1e-18 97.4 181 37.0
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 1.4e-18 97.1 168 36.3
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 1.4e-18 97.1 171 34.5
BraA08t35364Z Brassica rapa HOM05D003268 ORTHO05D003719 1.9e-18 96.7 168 38.1
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 1.9e-18 96.7 171 35.7
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 2.5e-18 96.3 176 33.0
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 2.5e-18 96.3 175 34.9
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 2.5e-18 96.3 170 38.8
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 5.5e-18 95.1 165 33.3
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 7.2e-18 94.7 171 35.1
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 7.2e-18 94.7 168 35.1
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 9.4e-18 94.4 163 35.0
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 2.1e-17 93.2 171 35.1
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 2.1e-17 93.2 164 35.4
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 2.7e-17 92.8 168 35.7
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 2.7e-17 92.8 149 39.6
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 2.7e-17 92.8 149 39.6
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 6.1e-17 91.7 176 33.5
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 6.1e-17 91.7 176 33.5
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 6.1e-17 91.7 163 33.7
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 7.9e-17 91.3 172 36.6
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.0e-16 90.9 171 36.3
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 1.0e-16 90.9 163 36.8
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 1.0e-16 90.9 183 34.4
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.4e-16 90.5 163 35.6
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 1.8e-16 90.1 178 33.7
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 1.8e-16 90.1 187 30.5
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 1.8e-16 90.1 162 35.2
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 2.3e-16 89.7 168 35.7
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 2.3e-16 89.7 162 34.6
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 3.0e-16 89.4 168 35.7
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 3.0e-16 89.4 175 34.3
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 5.1e-16 88.6 180 32.2
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 5.1e-16 88.6 165 35.8
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 5.1e-16 88.6 165 35.8
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 5.1e-16 88.6 160 35.0
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 6.7e-16 88.2 155 35.5
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 8.8e-16 87.8 167 36.5
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 8.8e-16 87.8 179 32.4
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 8.8e-16 87.8 184 32.1
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 1.1e-15 87.4 173 35.8
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 1.1e-15 87.4 173 35.8
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.1e-15 87.4 169 34.9
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 1.5e-15 87.0 160 34.4
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 1.5e-15 87.0 187 29.9
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 2.0e-15 86.7 165 35.2
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 2.0e-15 86.7 165 35.2
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 2.0e-15 86.7 174 33.3
Lj4g0025064 Lotus japonicus HOM05D003268 ORTHO05D003719 2.0e-15 86.7 168 35.1
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 2.0e-15 86.7 180 34.4
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.0e-15 86.7 165 34.5
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 2.6e-15 86.3 166 37.3
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 2.6e-15 86.3 184 33.7
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 2.6e-15 86.3 168 32.1
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 3.3e-15 85.9 184 32.1
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 4.4e-15 85.5 182 33.5
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 5.7e-15 85.1 156 34.6
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 5.7e-15 85.1 178 34.3
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 5.7e-15 85.1 177 33.3
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 7.4e-15 84.7 169 36.1
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 7.4e-15 84.7 173 32.4
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 9.7e-15 84.3 165 33.9
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 1.3e-14 84.0 172 32.6
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 2.2e-14 83.2 161 36.6
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 2.2e-14 83.2 172 34.3
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 2.8e-14 82.8 168 35.7
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 2.8e-14 82.8 166 36.7
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 2.8e-14 82.8 169 34.3
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 2.8e-14 82.8 180 32.2
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 3.7e-14 82.4 166 37.3
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 3.7e-14 82.4 180 32.2
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 3.7e-14 82.4 164 34.8
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 4.8e-14 82.0 178 34.3
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 4.8e-14 82.0 137 38.7
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 6.3e-14 81.6 156 34.0
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 8.2e-14 81.3 165 35.2
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 1.1e-13 80.9 183 32.2
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 1.1e-13 80.9 156 35.3
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 1.8e-13 80.1 166 35.5
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 1.8e-13 80.1 156 30.8
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 1.8e-13 80.1 144 36.1
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.4e-13 79.7 163 35.6
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 3.1e-13 79.3 151 35.1
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 3.1e-13 79.3 177 35.0
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 3.1e-13 79.3 177 33.3
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 4.1e-13 79.0 186 32.8
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 5.3e-13 78.6 169 33.1
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 5.3e-13 78.6 172 33.1
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 5.3e-13 78.6 171 33.9
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 9.1e-13 77.8 177 32.8
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 9.1e-13 77.8 177 32.8
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 1.2e-12 77.4 172 35.5
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 1.5e-12 77.0 157 32.5
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 2.0e-12 76.6 159 31.4
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 3.4e-12 75.9 181 33.1
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 5.9e-12 75.1 171 28.1
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 1.0e-11 74.3 177 33.9
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 1.3e-11 73.9 181 31.5
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 1.7e-11 73.6 156 28.8
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 2.9e-11 72.8 180 30.0
A01p36840 Brassica napus HOM05D003268 ORTHO05D003719 8.5e-11 71.2 42 90.5
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 1.4e-10 70.5 164 34.1
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 1.4e-10 70.5 153 34.6
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.9e-10 70.1 169 33.1
A01p36860 Brassica napus HOM05D003268 ORTHO05D003719 3.2e-10 69.3 42 88.1
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 5.5e-10 68.6 158 31.6
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 7.2e-10 68.2 177 28.2
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 1.2e-09 67.4 179 31.3
BolC1t04644H Brassica oleracea HOM05D002272 ORTHO05D040789 2.1e-09 66.6 36 97.2
BcaC07g38513 Brassica carinata HOM05D003268 ORTHO05D003719 2.7e-09 66.2 165 32.7
A01p36820 Brassica napus HOM05D003268 ORTHO05D003719 2.7e-09 66.2 42 83.3
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 1.4e-08 63.9 173 27.7
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 8.8e-08 61.2 84 38.1
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 3.3e-07 59.3 183 27.3
HanXRQChr07g0197201 Helianthus annuus HOM05D003268 ORTHO05D003719 2.2e-06 56.6 156 28.8


User provided reference genes

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