Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 7.1e-93 344.0 179 100.0
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 7.1e-93 344.0 179 100.0
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 7.1e-93 344.0 179 100.0
A01p36890 Brassica napus HOM05D003268 ORTHO05D003719 2.9e-78 295.4 172 91.9
BraA01t03748Z Brassica rapa HOM05D003268 ORTHO05D003719 4.2e-77 291.6 184 87.0
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 6.5e-62 241.1 173 78.0
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 6.5e-62 241.1 173 78.0
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 1.1e-58 230.3 164 76.2
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 2.1e-52 209.5 159 73.6
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.9e-50 203.0 210 60.0
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 1.7e-46 189.9 210 56.7
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 1.2e-39 167.2 204 51.5
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 6.5e-38 161.4 211 50.7
C05p48980 Brassica napus HOM05D003268 ORTHO05D003719 1.8e-35 153.3 192 54.2
BolC5t33638H Brassica oleracea HOM05D003268 ORTHO05D003719 1.8e-35 153.3 192 54.2
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 5.1e-35 151.8 193 56.0
AL3G30540 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 8.8e-35 151.0 202 50.5
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 2.2e-33 146.4 194 49.0
AT3G17460 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 4.8e-33 145.2 205 48.8
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 7.0e-32 141.4 164 52.4
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 3.5e-31 139.0 188 45.7
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 5.9e-31 138.3 201 43.3
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 5.0e-30 135.2 178 46.1
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 1.9e-29 133.3 212 44.8
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 2.1e-28 129.8 194 42.3
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 2.1e-28 129.8 194 42.3
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 8.0e-28 127.9 196 41.8
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 1.8e-27 126.7 191 41.4
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 3.9e-27 125.6 184 42.9
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 2.2e-25 119.8 181 41.4
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 4.8e-25 118.6 195 41.5
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 1.4e-24 117.1 208 39.4
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 7.0e-24 114.8 194 39.7
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 2.6e-23 112.8 177 41.2
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 3.5e-23 112.5 169 43.2
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 5.9e-23 111.7 164 39.0
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 1.0e-22 110.9 192 39.6
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 1.0e-22 110.9 201 39.8
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 1.0e-22 110.9 177 41.2
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 1.3e-22 110.5 183 39.3
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 3.8e-22 109.0 168 38.7
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 1.1e-21 107.5 170 40.6
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 4.2e-21 105.5 200 39.0
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 2.1e-20 103.2 177 39.5
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 3.6e-20 102.4 185 37.3
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 3.6e-20 102.4 171 38.6
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 1.0e-19 100.9 180 34.4
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.0e-19 100.9 143 43.4
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 1.0e-19 100.9 143 42.7
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 2.3e-19 99.8 191 34.0
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 3.0e-19 99.4 164 37.2
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 5.2e-19 98.6 186 36.6
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 6.8e-19 98.2 179 35.2
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 6.8e-19 98.2 189 33.9
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 8.8e-19 97.8 186 36.0
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 1.2e-18 97.4 198 35.4
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 3.4e-18 95.9 188 35.1
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 4.4e-18 95.5 185 34.6
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 5.7e-18 95.1 176 34.7
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 5.7e-18 95.1 184 35.9
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 5.7e-18 95.1 186 36.0
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 7.5e-18 94.7 177 35.0
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 7.5e-18 94.7 170 37.6
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 7.5e-18 94.7 181 35.4
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 9.8e-18 94.4 171 37.4
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 9.8e-18 94.4 171 37.4
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 1.3e-17 94.0 177 35.0
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 1.3e-17 94.0 184 35.9
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 2.2e-17 93.2 205 33.7
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 2.2e-17 93.2 185 31.4
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 2.8e-17 92.8 181 32.6
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 2.8e-17 92.8 177 35.6
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 3.7e-17 92.4 161 36.0
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 6.3e-17 91.7 185 33.0
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 8.3e-17 91.3 185 36.2
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 8.3e-17 91.3 173 36.4
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 1.1e-16 90.9 177 36.7
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.1e-16 90.9 161 36.0
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 1.1e-16 90.9 161 36.0
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 1.8e-16 90.1 185 33.5
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 1.8e-16 90.1 176 34.7
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 1.8e-16 90.1 181 34.3
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 3.1e-16 89.4 183 34.4
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 3.1e-16 89.4 176 35.2
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 4.1e-16 89.0 163 36.2
Lj4g0025064 Lotus japonicus HOM05D003268 ORTHO05D003719 4.1e-16 89.0 190 35.3
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 4.1e-16 89.0 189 33.3
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 5.4e-16 88.6 186 32.8
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 5.4e-16 88.6 185 35.7
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 7.0e-16 88.2 163 35.0
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 7.0e-16 88.2 166 36.1
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 9.1e-16 87.8 185 33.0
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 9.1e-16 87.8 154 39.0
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.2e-15 87.4 174 34.5
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.2e-15 87.4 165 36.4
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.2e-15 87.4 170 35.9
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 1.2e-15 87.4 181 34.3
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.7e-15 86.3 176 34.7
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 3.5e-15 85.9 168 32.7
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 3.5e-15 85.9 157 35.7
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 4.5e-15 85.5 154 35.1
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 4.5e-15 85.5 166 34.3
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 5.9e-15 85.1 181 32.0
A01p36840 Brassica napus HOM05D003268 ORTHO05D003719 7.7e-15 84.7 55 87.3
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 7.7e-15 84.7 185 34.1
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 1.0e-14 84.3 187 35.8
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 1.0e-14 84.3 190 33.2
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 1.0e-14 84.3 190 33.2
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 1.3e-14 84.0 171 35.1
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 1.3e-14 84.0 171 35.1
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 1.3e-14 84.0 165 35.2
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 1.7e-14 83.6 189 32.8
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 2.2e-14 83.2 179 36.3
A01p36860 Brassica napus HOM05D003268 ORTHO05D003719 2.9e-14 82.8 55 85.5
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 3.8e-14 82.4 152 35.5
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 3.8e-14 82.4 181 31.5
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 8.5e-14 81.3 180 33.3
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 8.5e-14 81.3 176 33.5
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 8.5e-14 81.3 180 33.3
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 8.5e-14 81.3 176 33.5
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 8.5e-14 81.3 188 33.5
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 8.5e-14 81.3 184 32.6
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 1.5e-13 80.5 171 34.5
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.9e-13 80.1 177 32.8
A01p36820 Brassica napus HOM05D003268 ORTHO05D003719 2.5e-13 79.7 55 81.8
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 2.5e-13 79.7 176 34.1
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 2.5e-13 79.7 174 31.0
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 2.5e-13 79.7 165 33.9
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 4.2e-13 79.0 172 30.8
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 5.5e-13 78.6 170 34.7
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 5.5e-13 78.6 189 33.3
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 5.5e-13 78.6 186 33.3
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 5.5e-13 78.6 204 33.3
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 5.5e-13 78.6 176 32.4
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 5.5e-13 78.6 175 32.6
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 7.2e-13 78.2 158 33.5
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 7.2e-13 78.2 169 34.9
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 7.2e-13 78.2 169 34.9
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 7.2e-13 78.2 160 32.5
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 7.2e-13 78.2 162 36.4
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 7.2e-13 78.2 162 36.4
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 9.4e-13 77.8 182 34.1
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.2e-12 77.4 201 33.3
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.2e-12 77.4 175 32.0
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 1.2e-12 77.4 175 32.0
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 1.2e-12 77.4 154 31.2
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 1.2e-12 77.4 161 32.9
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 1.6e-12 77.0 198 31.3
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 1.6e-12 77.0 181 32.0
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.6e-12 77.0 165 32.7
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 2.1e-12 76.6 179 33.5
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 2.7e-12 76.3 185 33.5
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 3.6e-12 75.9 181 31.5
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 4.7e-12 75.5 192 29.2
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 8.0e-12 74.7 175 32.6
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 1.0e-11 74.3 165 34.5
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 2.3e-11 73.2 177 32.2
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 4.0e-11 72.4 169 28.4
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 4.0e-11 72.4 148 36.5
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 5.2e-11 72.0 175 33.1
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 6.8e-11 71.6 174 31.6
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 6.8e-11 71.6 140 34.3
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 8.8e-11 71.2 187 30.5
BcaC07g36965 Brassica carinata HOM05D003268 ORTHO05D003719 1.5e-10 70.5 103 36.9
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 2.0e-10 70.1 172 32.6
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 5.7e-10 68.6 144 36.8
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 7.5e-10 68.2 194 29.4
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 7.5e-10 68.2 190 28.9
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 1.2e-07 60.8 170 30.6
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 1.6e-07 60.5 197 31.5


User provided reference genes

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