Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 1.2e-92 343.2 171 100.0
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 2.4e-37 159.5 121 71.1
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 3.4e-36 155.6 120 71.7
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 5.8e-36 154.8 120 70.8
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 2.9e-35 152.5 120 70.8
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 3.8e-35 152.1 96 84.4
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 2.4e-34 149.4 97 81.4
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 6.0e-33 144.8 126 61.9
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 3.3e-31 139.0 127 60.6
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 3.3e-31 139.0 127 60.6
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 3.3e-31 139.0 127 60.6
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 4.3e-31 138.7 124 62.1
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 5.6e-31 138.3 129 60.5
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 7.3e-31 137.9 132 60.6
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.6e-30 136.7 129 60.5
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.4e-29 133.7 129 60.5
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 1.4e-29 133.7 119 63.9
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 4.0e-29 132.1 129 58.9
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 4.0e-29 132.1 129 58.9
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 4.0e-29 132.1 113 62.8
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 5.3e-29 131.7 119 62.2
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 6.9e-29 131.3 127 59.8
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 6.9e-29 131.3 127 59.8
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 6.9e-29 131.3 113 62.8
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 9.0e-29 131.0 115 62.6
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 9.0e-29 131.0 109 64.2
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 2.6e-28 129.4 123 57.7
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 3.4e-28 129.0 127 58.3
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 7.6e-28 127.9 122 57.4
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 9.9e-28 127.5 113 62.8
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.4e-26 123.6 126 55.6
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 4.2e-26 122.1 114 57.9
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.0e-19 100.9 101 52.5
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 1.3e-19 100.5 98 51.0
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 2.2e-19 99.8 105 49.5
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 3.8e-19 99.0 84 57.1
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 4.9e-19 98.6 104 51.0
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 6.5e-19 98.2 84 58.3
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 8.4e-19 97.8 107 49.5
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 1.1e-18 97.4 84 58.3
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 1.4e-18 97.1 107 47.7
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 1.4e-18 97.1 107 47.7
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.4e-18 97.1 84 57.1
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 1.4e-18 97.1 92 55.4
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 1.9e-18 96.7 84 57.1
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 1.9e-18 96.7 84 57.1
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 1.9e-18 96.7 107 48.6
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 3.2e-18 95.9 107 48.6
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 4.2e-18 95.5 107 46.7
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 4.2e-18 95.5 107 46.7
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 4.2e-18 95.5 107 46.7
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 5.5e-18 95.1 107 46.7
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 5.5e-18 95.1 84 58.3
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 9.3e-18 94.4 84 57.1
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 9.3e-18 94.4 101 49.5
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 1.2e-17 94.0 65 78.5
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 1.6e-17 93.6 109 46.8
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.1e-17 93.2 99 50.5
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 2.1e-17 93.2 84 56.0
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.1e-17 93.2 119 46.2
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 2.7e-17 92.8 92 51.1
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 4.6e-17 92.0 84 56.0
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 4.6e-17 92.0 84 54.8
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 6.0e-17 91.7 84 56.0
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 6.0e-17 91.7 85 56.5
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 6.0e-17 91.7 92 54.3
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 6.0e-17 91.7 129 40.3
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 7.9e-17 91.3 122 41.8
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 7.9e-17 91.3 84 54.8
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 7.9e-17 91.3 80 58.8
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 7.9e-17 91.3 107 43.9
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 7.9e-17 91.3 106 50.9
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 1.0e-16 90.9 84 54.8
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 1.0e-16 90.9 129 41.1
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.0e-16 90.9 122 42.6
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.0e-16 90.9 129 41.1
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 1.0e-16 90.9 84 54.8
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 1.3e-16 90.5 84 57.1
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.3e-16 90.5 101 47.5
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.3e-16 90.5 84 54.8
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 1.8e-16 90.1 84 54.8
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 2.3e-16 89.7 104 47.1
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.3e-16 89.7 103 48.5
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.3e-16 89.7 127 40.9
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 2.3e-16 89.7 84 56.0
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.0e-16 89.4 107 44.9
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 3.0e-16 89.4 103 45.6
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.9e-16 89.0 84 53.6
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 3.9e-16 89.0 99 49.5
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 3.9e-16 89.0 84 54.8
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 3.9e-16 89.0 84 54.8
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 3.9e-16 89.0 105 48.6
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 6.7e-16 88.2 84 54.8
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 6.7e-16 88.2 84 53.6
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 6.7e-16 88.2 103 48.5
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 8.7e-16 87.8 103 49.5
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 8.7e-16 87.8 85 47.1
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.1e-15 87.4 107 44.9
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 1.1e-15 87.4 95 49.5
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 1.5e-15 87.0 106 45.3
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 1.5e-15 87.0 84 51.2
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.9e-15 86.7 115 44.3
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 1.9e-15 86.7 84 53.6
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 1.9e-15 86.7 107 43.9
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 1.9e-15 86.7 107 43.9
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 1.9e-15 86.7 81 55.6
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 1.9e-15 86.7 80 56.2
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 2.5e-15 86.3 84 51.2
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 2.5e-15 86.3 84 51.2
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 3.3e-15 85.9 84 50.0
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 3.3e-15 85.9 84 51.2
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 4.3e-15 85.5 101 46.5
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 7.4e-15 84.7 84 51.2
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 7.4e-15 84.7 84 48.8
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 7.4e-15 84.7 105 45.7
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 9.6e-15 84.3 80 56.2
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 1.3e-14 84.0 84 52.4
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 2.8e-14 82.8 65 60.0
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.8e-14 82.8 84 48.8
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 2.8e-14 82.8 103 46.6
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 2.8e-14 82.8 103 46.6
BcaNung06569 Brassica carinata HOM05D003740 ORTHO05D027079 3.7e-14 82.4 65 66.2
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 3.7e-14 82.4 84 46.4
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 4.8e-14 82.0 124 42.7
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 6.2e-14 81.6 103 45.6
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 6.2e-14 81.6 84 50.0
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.1e-13 80.9 84 50.0
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 1.1e-13 80.9 101 44.6
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.8e-13 80.1 76 52.6
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 2.4e-13 79.7 80 47.5
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 2.4e-13 79.7 129 38.0
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 3.1e-13 79.3 84 48.8
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 3.1e-13 79.3 84 47.6
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 5.3e-13 78.6 84 48.8
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 1.2e-12 77.4 106 42.5
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 1.5e-12 77.0 125 41.6
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 3.4e-12 75.9 84 46.4
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 4.5e-12 75.5 84 47.6
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 5.8e-12 75.1 129 37.2
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.3e-11 73.9 103 39.8
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 1.7e-11 73.6 74 51.4
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 2.7e-09 66.2 84 45.2
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 1.0e-08 64.3 129 37.2
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 6.7e-08 61.6 80 47.5
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 1.5e-07 60.5 63 49.2
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 9.7e-07 57.8 67 43.3
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 2.2e-06 56.6 49 61.2


User provided reference genes

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