Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48556 Brassica carinata HOM05D007722 ORTHO05D009730 1.3e-53 213.0 119 100.0
BraA01t03884Z Brassica rapa HOM05D007722 ORTHO05D009730 1.4e-49 199.5 119 89.9
A01p38330 Brassica napus HOM05D007722 ORTHO05D009730 1.2e-48 196.4 119 94.1
BolC1t04820H Brassica oleracea HOM05D000771 ORTHO05D001963 3.3e-46 188.3 106 100.0
BcaB04g20904 Brassica carinata HOM05D007722 ORTHO05D009730 1.3e-45 186.4 119 89.1
C01p48660 Brassica napus HOM05D000771 ORTHO05D001963 6.9e-44 180.6 106 97.2
CARHR090870 Cardamine hirsuta HOM05D007722 ORTHO05D009730 2.4e-36 155.6 119 71.4
Thhalv10021781m.g Eutrema salsugineum HOM05D007722 ORTHO05D009730 2.6e-35 152.1 125 80.0
Sp3g14100 Schrenkiella parvula HOM05D007722 ORTHO05D009730 1.3e-34 149.8 125 78.4
Carub.0003s1552 Capsella rubella HOM05D007722 ORTHO05D009730 7.1e-33 144.1 123 75.6
A05p33600 Brassica napus HOM05D000020 ORTHO05D000543 1.3e-26 123.2 110 71.8
BolC5t33806H Brassica oleracea HOM05D007722 ORTHO05D009730 5.0e-26 121.3 106 73.6
BcaC05g28932 Brassica carinata HOM05D000020 ORTHO05D000543 1.4e-25 119.8 122 67.2
C05p50590 Brassica napus HOM05D000020 ORTHO05D000543 1.4e-25 119.8 122 67.2
BraA05t22184Z Brassica rapa HOM05D000771 ORTHO05D001963 8.2e-21 104.0 106 70.8
THA.LOC104810506 Tarenaya hassleriana HOM05D007722 ORTHO05D009730 2.0e-19 99.4 130 53.8
Aa31LG8G2980 Aethionema arabicum HOM05D007722 ORTHO05D009730 4.5e-19 98.2 135 54.8
AT1G52550 Arabidopsis thaliana HOM05D007722 ORTHO05D009730 2.5e-17 92.4 134 53.7
AL3G28440 Arabidopsis lyrata HOM05D007722 ORTHO05D009730 3.2e-17 92.0 95 65.3
BcaB06g25688 Brassica carinata HOM05D000020 ORTHO05D001963 4.2e-17 91.7 52 84.6
AL1G60800 Arabidopsis lyrata HOM05D007722 ORTHO05D009730 9.4e-17 90.5 133 53.4
Carub.0001s4151 Capsella rubella HOM05D007722 ORTHO05D009730 9.4e-17 90.5 133 51.9
THA.LOC104818136 Tarenaya hassleriana HOM05D007722 ORTHO05D009730 3.6e-16 88.6 133 48.9
AT3G15780 Arabidopsis thaliana HOM05D007722 ORTHO05D009730 1.8e-15 86.3 123 57.7
CARHR042660 Cardamine hirsuta HOM05D007722 ORTHO05D009730 5.1e-15 84.7 133 48.9
Thhalv10011859m.g Eutrema salsugineum HOM05D007722 ORTHO05D009730 1.8e-12 76.3 132 47.0
Potri.001G192500 Populus trichocarpa HOM05D007722 ORTHO05D009730 6.5e-10 67.8 50 62.0
COL.COLO4_12955 Corchorus olitorius HOM05D007722 ORTHO05D009730 1.1e-09 67.0 94 44.7
Gohir.D10G075700 Gossypium hirsutum HOM05D007722 ORTHO05D009730 1.4e-09 66.6 98 42.9
Glyma.07G030600 Glycine max HOM05D007722 ORTHO05D009730 2.5e-09 65.9 122 36.9
Gorai.011G083600 Gossypium raimondii HOM05D007722 ORTHO05D009730 4.2e-09 65.1 98 40.8
CSS0036618 Camellia sinensis var. sinensis HOM05D007722 ORTHO05D009730 5.5e-09 64.7 122 39.3
Gohir.A10G073900 Gossypium hirsutum HOM05D007722 ORTHO05D009730 7.2e-09 64.3 98 41.8
Psat7g256360 Pisum sativum HOM05D007722 ORTHO05D009730 7.2e-09 64.3 111 39.6
Lalb_Chr25g0279351 Lupinus albus HOM05D007722 ORTHO05D009730 9.4e-09 63.9 76 40.8
Medtr4g010270 Medicago truncatula HOM05D007722 ORTHO05D009730 9.4e-09 63.9 48 54.2
MD17G1210100 Malus domestica HOM05D007722 ORTHO05D009730 1.6e-08 63.2 88 43.2
VMungo0331G1522 Vigna mungo HOM05D007722 ORTHO05D009730 2.1e-08 62.8 121 39.7
Duzib160G0092 Durio zibethinus HOM05D007722 ORTHO05D009730 2.7e-08 62.4 117 38.5
MBI01_g35411_MAGBIO Magnolia biondii HOM05D007722 ORTHO05D009730 2.7e-08 62.4 78 44.9
Nn2g12058 Nelumbo nucifera HOM05D007722 ORTHO05D009730 3.6e-08 62.0 113 37.2
Prupe.3G085400 Prunus persica HOM05D007722 ORTHO05D009730 3.6e-08 62.0 89 42.7
Haze_16545 Corylus avellana HOM05D007722 ORTHO05D009730 4.7e-08 61.6 115 38.3
GSVIVG01017323001 Vitis vinifera HOM05D007722 ORTHO05D009730 4.7e-08 61.6 82 47.6
Eucgr.F03868 Eucalyptus grandis HOM05D007722 ORTHO05D009730 7.9e-08 60.8 77 40.3
Eucgr.L02714 Eucalyptus grandis HOM05D007722 ORTHO05D009730 7.9e-08 60.8 77 40.3
FAN09G0448 Fragaria x ananassa HOM05D007722 ORTHO05D009730 7.9e-08 60.8 75 42.7
Sabra01G0149600 Salix brachista HOM05D007722 ORTHO05D009730 7.9e-08 60.8 40 62.5
Cfa001975 Carpinus fangiana HOM05D007722 ORTHO05D009730 1.0e-07 60.5 99 39.4
Manes.11G056000 Manihot esculenta HOM05D007722 ORTHO05D009730 1.0e-07 60.5 96 41.7
Sc10g0005890 Simmondsia chinensis HOM05D007722 ORTHO05D009730 1.0e-07 60.5 45 62.2
Solyc03g116660.3 Solanum lycopersicum HOM05D007722 ORTHO05D009730 1.0e-07 60.5 73 53.4
CANSAT56G0372 Cannabis sativa HOM05D007722 ORTHO05D009730 1.4e-07 60.1 89 46.1
Thecc.06G022100 Theobroma cacao HOM05D007722 ORTHO05D009730 1.4e-07 60.1 48 58.3
QL05p029543 Quercus lobata HOM05D007722 ORTHO05D009730 1.8e-07 59.7 48 58.3
FvH4_6g29860 Fragaria vesca HOM05D007722 ORTHO05D009730 2.3e-07 59.3 89 42.7
FAN14G1239 Fragaria x ananassa HOM05D007722 ORTHO05D009730 2.3e-07 59.3 89 42.7
SGA_v2.0_scaffold37G14773 Striga asiatica HOM05D007722 ORTHO05D009730 2.3e-07 59.3 55 52.7
TAR636G1020 Trochodendron aralioides HOM05D007722 ORTHO05D009730 3.0e-07 58.9 128 38.3
Phvul.010G155500 Phaseolus vulgaris HOM05D007722 ORTHO05D009730 3.9e-07 58.5 117 36.8
Sopen03g035570 Solanum pennellii HOM05D007722 ORTHO05D009730 3.9e-07 58.5 112 43.8
unitig_0.g1117 Utricularia gibba HOM05D007722 ORTHO05D009730 3.9e-07 58.5 48 60.4
ClCG09G002890 Citrullus lanatus HOM05D007722 ORTHO05D009730 5.1e-07 58.2 90 43.3
Dinv30597 Davidia involucrata HOM05D007722 ORTHO05D009730 5.1e-07 58.2 72 43.1
PSO210G0183 Papaver somniferum HOM05D007722 ORTHO05D009730 5.1e-07 58.2 72 43.1
PGSC0003DMG401000617 Solanum tuberosum HOM05D007722 ORTHO05D009730 5.1e-07 58.2 73 52.1
Rhsim08G0213600 Rhododendron simsii HOM05D007722 ORTHO05D009730 6.7e-07 57.8 81 43.2
Migut.D01071 Erythranthe guttata HOM05D007722 ORTHO05D009730 8.8e-07 57.4 48 56.2
Nitab4.5_0007793g0010 Nicotiana tabacum HOM05D007722 ORTHO05D009730 8.8e-07 57.4 48 54.2
PSO210G5680 Papaver somniferum HOM05D007722 ORTHO05D009730 8.8e-07 57.4 63 44.4
Lj3g0002989 Lotus japonicus HOM05D007722 ORTHO05D009730 1.1e-06 57.0 47 55.3
Lalb_Chr04g0262381 Lupinus albus HOM05D007722 ORTHO05D009730 1.1e-06 57.0 76 43.4
HPP92_000666 Vanilla planifolia HOM05D007722 ORTHO05D009730 1.5e-06 56.6 72 44.4
ECA232G4504 Erigeron canadensis HOM05D000985 ORTHO05D000866 2.6e-06 55.8 66 42.4
Gohir.A05G126200 Gossypium hirsutum HOM05D007722 ORTHO05D009730 2.6e-06 55.8 45 55.6
Gohir.D05G127100 Gossypium hirsutum HOM05D007722 ORTHO05D009730 2.6e-06 55.8 45 55.6
Gorai.009G131200 Gossypium raimondii HOM05D007722 ORTHO05D009730 2.6e-06 55.8 45 55.6
Glyma.08G212200 Glycine max HOM05D007722 ORTHO05D009730 3.3e-06 55.5 44 54.5
CDE06G0954 Ceratophyllum demersum HOM05D007722 ORTHO05D009730 4.4e-06 55.1 59 44.1
Manes.04G113466 Manihot esculenta HOM05D007722 ORTHO05D009730 4.4e-06 55.1 94 38.3
PGR102G2260 Punica granatum HOM05D007722 ORTHO05D009730 4.4e-06 55.1 65 36.9
Nitab4.5_0011590g0030 Nicotiana tabacum HOM05D007722 ORTHO05D009730 5.7e-06 54.7 47 51.1


User provided reference genes

Program Settings