Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 1.3e-48 196.1 98 100.0
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 1.3e-48 196.1 98 100.0
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 1.1e-47 193.0 98 99.0
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 1.0e-45 186.4 95 95.8
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 3.7e-43 177.9 107 86.0
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 1.1e-42 176.4 105 86.7
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 5.3e-42 174.1 107 83.2
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 5.3e-42 174.1 107 83.2
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 5.3e-42 174.1 107 83.2
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 1.2e-41 172.9 107 82.2
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 1.2e-41 172.9 107 82.2
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 1.7e-40 169.1 107 82.2
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 2.9e-40 168.3 104 82.7
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 3.8e-40 167.9 98 88.8
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 6.5e-40 167.2 107 80.4
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 4.2e-39 164.5 107 78.5
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 5.5e-39 164.1 108 80.6
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 8.8e-29 130.2 114 61.4
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 7.4e-28 127.1 108 60.2
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 1.8e-26 122.5 105 63.8
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 1.5e-25 119.4 111 59.5
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 1.5e-25 119.4 104 62.5
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 2.7e-22 108.6 100 59.0
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 2.3e-21 105.5 104 57.7
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 2.3e-21 105.5 104 57.7
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 2.6e-20 102.1 108 55.6
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 4.4e-20 101.3 104 56.7
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 4.4e-20 101.3 104 56.7
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 4.4e-20 101.3 104 56.7
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 1.6e-17 92.8 76 60.5
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 4.5e-17 91.3 68 61.8
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 1.7e-16 89.4 68 61.8
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 2.2e-16 89.0 84 54.8
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 3.8e-16 88.2 102 46.1
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 5.0e-16 87.8 84 56.0
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 5.0e-16 87.8 68 60.3
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 5.0e-16 87.8 67 62.7
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 5.0e-16 87.8 101 47.5
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 5.0e-16 87.8 67 62.7
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 8.5e-16 87.0 69 59.4
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 1.1e-15 86.7 72 61.1
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 1.1e-15 86.7 69 59.4
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 2.5e-15 85.5 65 61.5
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 2.5e-15 85.5 68 58.8
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 3.2e-15 85.1 67 61.2
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 5.5e-15 84.3 94 46.8
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 9.4e-15 83.6 64 57.8
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 1.6e-14 82.8 82 56.1
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.6e-14 82.8 86 53.5
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 1.6e-14 82.8 86 53.5
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 2.1e-14 82.4 87 52.9
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 4.7e-14 81.3 89 49.4
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.4e-13 79.7 88 47.7
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 1.4e-13 79.7 88 47.7
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 1.8e-13 79.3 75 54.7
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 2.3e-13 79.0 109 45.0
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 4.0e-13 78.2 61 60.7
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 2.0e-12 75.9 100 44.0
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 2.8e-11 72.0 98 44.9
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 3.7e-11 71.6 67 53.7
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 1.8e-10 69.3 69 50.7
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 2.4e-10 68.9 98 42.9
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 3.1e-10 68.6 98 42.9
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 3.1e-10 68.6 98 42.9
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 3.1e-10 68.6 98 42.9
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 5.4e-10 67.8 70 55.7
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 5.4e-10 67.8 94 43.6
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 7.0e-10 67.4 98 41.8
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 3.5e-09 65.1 71 50.7
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 3.8e-08 61.6 81 48.1
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 2.5e-07 58.9 92 48.9
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 3.2e-07 58.5 91 48.4
Sed0019748 Sechium edule HOM05D007708 ORTHO05D009506 3.2e-07 58.5 35 77.1
PGSC0003DMG400040761 Solanum tuberosum HOM05D007708 ORTHO05D009506 4.2e-07 58.2 37 64.9
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 7.2e-07 57.4 79 48.1
Cc05_g12520 Coffea canephora HOM05D007708 ORTHO05D009506 9.4e-07 57.0 33 75.8
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 9.4e-07 57.0 76 44.7
Nitab4.5_0000662g0060 Nicotiana tabacum HOM05D007708 ORTHO05D009506 9.4e-07 57.0 33 66.7
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 9.4e-07 57.0 36 66.7
Sed0014711 Sechium edule HOM05D007708 ORTHO05D009506 1.2e-06 56.6 35 74.3
Lsat_1_v5_gn_5_7381 Lactuca sativa HOM05D007708 ORTHO05D009506 2.1e-06 55.8 35 68.6
Nitab4.5_0001610g0030 Nicotiana tabacum HOM05D007708 ORTHO05D009506 2.7e-06 55.5 33 63.6
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 3.6e-06 55.1 104 40.4
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 6.1e-06 54.3 33 69.7


User provided reference genes

Program Settings