Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 1.1e-69 266.5 136 100.0
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 1.1e-69 266.5 136 100.0
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 2.1e-68 262.3 136 98.5
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 2.1e-68 262.3 136 98.5
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 2.7e-68 261.9 136 97.8
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 6.0e-60 234.2 132 90.9
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 5.4e-45 184.5 134 72.4
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 1.9e-34 149.4 95 78.9
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 2.2e-17 92.8 137 42.3
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 1.4e-16 90.1 137 40.9
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 1.8e-16 89.7 122 41.0
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 2.4e-16 89.4 122 41.0
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 9.1e-16 87.4 118 44.1
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 2.0e-15 86.3 124 38.7
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 2.0e-15 86.3 129 38.8
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 2.6e-15 85.9 117 40.2
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 4.5e-15 85.1 122 39.3
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 5.9e-15 84.7 132 37.1
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 7.7e-15 84.3 113 43.4
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 7.7e-15 84.3 124 38.7
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 1.0e-14 84.0 122 38.5
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 1.3e-14 83.6 122 38.5
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 1.3e-14 83.6 125 40.8
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 1.7e-14 83.2 122 38.5
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.7e-14 83.2 125 39.2
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.7e-14 83.2 118 43.2
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 1.7e-14 83.2 120 40.0
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 1.7e-14 83.2 121 40.5
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 2.2e-14 82.8 118 43.2
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.9e-14 82.4 121 38.8
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 3.8e-14 82.0 125 39.2
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 3.8e-14 82.0 118 39.8
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 3.8e-14 82.0 112 41.1
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 5.0e-14 81.6 122 41.0
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 6.5e-14 81.3 125 39.2
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 6.5e-14 81.3 133 39.1
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 6.5e-14 81.3 117 41.9
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 8.5e-14 80.9 113 39.8
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 8.5e-14 80.9 118 40.7
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 1.1e-13 80.5 117 39.3
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 1.1e-13 80.5 115 38.3
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 1.4e-13 80.1 137 35.0
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 1.4e-13 80.1 112 40.2
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.4e-13 80.1 116 38.8
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 1.4e-13 80.1 125 36.0
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.9e-13 79.7 116 38.8
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 2.5e-13 79.3 122 36.9
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 2.5e-13 79.3 122 37.7
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 2.5e-13 79.3 113 39.8
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 2.5e-13 79.3 112 40.2
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 2.5e-13 79.3 109 44.0
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 2.5e-13 79.3 118 41.5
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 2.5e-13 79.3 132 37.9
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 3.2e-13 79.0 117 39.3
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 3.2e-13 79.0 95 43.2
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 3.2e-13 79.0 116 37.9
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 3.2e-13 79.0 95 43.2
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 3.2e-13 79.0 119 37.8
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 3.2e-13 79.0 132 35.6
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 4.2e-13 78.6 122 36.9
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 5.5e-13 78.2 131 33.6
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 5.5e-13 78.2 117 39.3
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 5.5e-13 78.2 120 36.7
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 7.2e-13 77.8 116 33.6
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 7.2e-13 77.8 131 33.6
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 7.2e-13 77.8 117 38.5
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 9.4e-13 77.4 122 36.1
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 9.4e-13 77.4 140 34.3
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 9.4e-13 77.4 140 34.3
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 9.4e-13 77.4 117 37.6
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 9.4e-13 77.4 133 37.6
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 1.2e-12 77.0 122 36.9
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.2e-12 77.0 112 41.1
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 1.2e-12 77.0 130 34.6
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 1.2e-12 77.0 132 37.1
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 1.6e-12 76.6 122 37.7
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 2.1e-12 76.3 122 36.9
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 3.6e-12 75.5 113 36.3
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 3.6e-12 75.5 132 36.4
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 4.7e-12 75.1 122 35.2
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 4.7e-12 75.1 122 36.1
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 4.7e-12 75.1 115 38.3
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 4.7e-12 75.1 118 41.5
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 4.7e-12 75.1 118 38.1
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 6.1e-12 74.7 124 33.1
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 6.1e-12 74.7 122 36.9
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 6.1e-12 74.7 112 40.2
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 6.1e-12 74.7 112 40.2
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 7.9e-12 74.3 116 37.1
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 7.9e-12 74.3 110 38.2
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 7.9e-12 74.3 117 36.8
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 1.4e-11 73.6 137 33.6
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 1.4e-11 73.6 134 34.3
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.4e-11 73.6 115 36.5
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 2.3e-11 72.8 137 32.8
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 2.3e-11 72.8 133 34.6
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 3.0e-11 72.4 117 35.9
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 3.9e-11 72.0 122 37.7
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 5.1e-11 71.6 126 38.9
THA.LOC104818140 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 6.7e-11 71.2 89 49.4
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 8.8e-11 70.9 126 36.5
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 2.0e-10 69.7 102 38.2
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 2.0e-10 69.7 106 42.5
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 2.6e-10 69.3 118 33.1
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 7.4e-10 67.8 119 33.6
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 1.3e-09 67.0 134 31.3
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 1.3e-09 67.0 133 31.6
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 1.7e-09 66.6 112 33.9
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 1.7e-09 66.6 123 34.1
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 2.2e-09 66.2 132 30.3
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 2.8e-09 65.9 114 36.8
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 3.7e-09 65.5 126 35.7
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 6.3e-09 64.7 110 34.5
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 8.2e-09 64.3 106 35.8
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 1.4e-08 63.5 86 41.9
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.8e-08 63.2 127 33.1
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 2.4e-08 62.8 110 34.5
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.5e-07 60.1 80 41.2
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 2.0e-07 59.7 127 32.3
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 3.4e-07 58.9 77 44.2
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 4.5e-07 58.5 105 37.1
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 5.9e-07 58.2 99 36.4
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 1.3e-06 57.0 90 36.7
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 1.7e-06 56.6 87 36.8


User provided reference genes

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