Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 1.2e-69 266.5 151 100.0
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 1.8e-65 252.7 145 98.6
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 1.5e-64 249.6 145 97.9
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 2.1e-61 239.2 145 95.2
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 2.1e-61 239.2 145 95.2
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 1.4e-54 216.5 151 88.1
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 7.1e-54 214.2 148 87.2
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 7.1e-54 214.2 150 85.3
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 2.5e-51 205.7 150 82.7
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 4.3e-51 204.9 150 83.3
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 4.3e-51 204.9 150 83.3
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 4.8e-50 201.4 150 82.0
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 1.2e-48 196.8 150 81.3
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 7.6e-48 194.1 149 82.6
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 1.0e-47 193.7 150 80.7
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 8.4e-47 190.7 151 80.1
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 8.4e-47 190.7 150 80.7
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 1.6e-42 176.4 154 76.0
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 3.7e-42 175.3 148 73.6
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 6.9e-41 171.0 148 74.3
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 2.3e-28 129.4 80 92.5
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 3.0e-28 129.0 145 59.3
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 3.9e-28 128.6 147 57.1
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 5.1e-28 128.3 80 91.2
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 5.7e-27 124.8 147 58.5
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 9.7e-27 124.0 148 58.8
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 1.3e-26 123.6 123 66.7
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 1.3e-26 123.6 139 60.4
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 1.7e-26 123.2 148 58.8
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.7e-26 123.2 148 58.8
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 1.7e-26 123.2 148 56.8
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 2.8e-26 122.5 147 57.8
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 3.7e-26 122.1 142 58.5
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 4.8e-26 121.7 148 58.1
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 8.2e-26 120.9 138 58.0
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 8.2e-26 120.9 144 57.6
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 1.1e-25 120.6 140 56.4
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 2.4e-25 119.4 138 57.2
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 2.4e-25 119.4 150 56.0
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 4.1e-25 118.6 138 57.2
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 5.3e-25 118.2 139 56.1
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 6.9e-25 117.9 147 53.7
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 6.9e-25 117.9 144 57.6
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 9.1e-25 117.5 147 55.1
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 2.0e-24 116.3 147 55.1
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 3.4e-24 115.5 144 53.5
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 7.7e-24 114.4 141 58.2
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 7.7e-24 114.4 142 54.9
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 1.3e-23 113.6 149 55.0
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 1.7e-23 113.2 148 54.1
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 3.8e-23 112.1 108 62.0
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 3.8e-23 112.1 144 56.2
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 3.8e-23 112.1 138 57.2
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 5.0e-23 111.7 150 55.3
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.1e-22 110.5 151 55.0
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 1.1e-22 110.5 151 55.0
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 1.1e-22 110.5 142 54.9
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 1.1e-22 110.5 142 54.9
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 1.1e-22 110.5 142 54.2
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 2.5e-22 109.4 115 58.3
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 4.2e-22 108.6 151 55.0
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 5.5e-22 108.2 147 55.8
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 5.5e-22 108.2 152 54.6
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 7.2e-22 107.8 136 52.2
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 7.2e-22 107.8 148 52.7
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 1.6e-21 106.7 149 54.4
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 4.7e-21 105.1 136 55.1
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 4.7e-21 105.1 144 51.4
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 6.1e-21 104.8 76 76.3
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 6.1e-21 104.8 127 57.5
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 1.8e-20 103.2 146 53.4
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 3.9e-20 102.1 138 52.9
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 6.7e-20 101.3 121 55.4
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 8.8e-20 100.9 149 52.3
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 8.8e-20 100.9 142 53.5
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 1.1e-19 100.5 141 53.2
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.5e-19 100.1 138 52.2
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.5e-19 100.1 138 52.2
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 2.0e-19 99.8 78 70.5
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 2.0e-19 99.8 128 55.5
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 2.0e-19 99.8 115 55.7
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 2.0e-19 99.8 138 52.2
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 3.3e-19 99.0 100 61.0
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 4.4e-19 98.6 145 54.5
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 4.4e-19 98.6 136 54.4
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 9.7e-19 97.4 145 52.4
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 1.7e-18 96.7 79 67.1
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 3.7e-18 95.5 149 51.0
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 3.7e-18 95.5 136 55.1
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 3.7e-18 95.5 138 51.4
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 6.3e-18 94.7 161 49.1
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 1.1e-17 94.0 141 50.4
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 1.8e-17 93.2 148 52.7
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 2.4e-17 92.8 139 51.8
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 5.3e-17 91.7 117 58.1
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 5.3e-17 91.7 77 66.2
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 1.6e-16 90.1 146 47.9
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 1.6e-16 90.1 149 49.0
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 2.0e-16 89.7 145 46.2
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 2.0e-16 89.7 142 53.5
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 2.0e-16 89.7 141 50.4
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 2.6e-16 89.4 73 71.2
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 3.5e-16 89.0 177 44.6
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 3.5e-16 89.0 74 71.6
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 4.5e-16 88.6 146 47.9
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.3e-15 87.0 139 48.9
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 1.7e-15 86.7 145 45.5
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 2.2e-15 86.3 69 68.1
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 3.2e-14 82.4 103 54.4
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 1.2e-13 80.5 137 50.4
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 3.6e-13 79.0 115 53.9
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 1.4e-12 77.0 128 50.8
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 3.3e-11 72.4 139 46.0
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 3.3e-11 72.4 70 55.7
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 1.7e-10 70.1 49 75.5
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 4.8e-10 68.6 116 49.1
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 8.2e-10 67.8 138 39.9
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 1.4e-09 67.0 136 42.6
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 1.2e-08 63.9 130 38.5
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 2.0e-08 63.2 149 38.3
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 2.0e-08 63.2 63 58.7
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 2.7e-08 62.8 71 54.9
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 3.8e-07 58.9 124 43.5
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 5.0e-07 58.5 64 53.1
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 1.1e-06 57.4 114 48.2


User provided reference genes

Program Settings