Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48475 Brassica carinata HOM05D008621 ORTHO05D010242 1.9e-184 649.0 336 100.0
BolC1t04897H Brassica oleracea HOM05D008621 ORTHO05D010242 1.9e-184 649.0 336 100.0
C01p49400 Brassica napus HOM05D008621 ORTHO05D010242 3.4e-181 638.3 336 98.8
A01p38850 Brassica napus HOM05D008621 ORTHO05D010242 8.7e-169 597.0 337 93.5
BraA01t03931Z Brassica rapa HOM05D008621 ORTHO05D010242 1.7e-164 582.8 332 92.8
BcaB04g20947 Brassica carinata HOM05D008621 ORTHO05D010242 1.1e-160 570.1 337 89.0
Thhalv10021100m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 1.1e-144 516.9 339 82.6
AT3G15115 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 7.2e-131 471.1 344 77.3
CARHR090090 Cardamine hirsuta HOM05D008621 ORTHO05D010242 1.0e-129 467.2 343 76.7
BraA05t22253Z Brassica rapa HOM05D008621 ORTHO05D010242 2.9e-124 449.1 341 76.5
AL3G27470 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 2.5e-123 446.0 342 74.9
C05p52100 Brassica napus HOM05D008621 ORTHO05D010242 1.5e-120 436.8 339 74.0
A05p34320 Brassica napus HOM05D008621 ORTHO05D010242 1.3e-116 423.7 341 73.6
BcaB06g29537 Brassica carinata HOM05D008621 ORTHO05D010242 1.2e-114 417.2 338 71.6
Sp3g13320 Schrenkiella parvula HOM05D008621 ORTHO05D010242 1.0e-113 414.1 304 75.0
Carub.0003s1476 Capsella rubella HOM05D008621 ORTHO05D010242 4.6e-93 345.5 234 82.5
Aa31LG8G2330 Aethionema arabicum HOM05D008621 ORTHO05D010242 5.4e-86 322.0 341 61.3
BolC5t33895H Brassica oleracea HOM05D008621 ORTHO05D010242 4.0e-81 305.8 238 76.1
THA.LOC104810457 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 1.3e-52 211.1 336 44.9
AT1G53180 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 1.0e-44 184.9 408 39.5
AL1G61580 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 2.5e-43 180.3 388 39.7
Thhalv10011625m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 9.6e-43 178.3 384 40.1
Sp1g39760 Schrenkiella parvula HOM05D008621 ORTHO05D010242 2.8e-42 176.8 387 39.3
Carub.0001s4237 Capsella rubella HOM05D008621 ORTHO05D010242 1.2e-40 171.4 394 39.1
BcaB04g17107 Brassica carinata HOM05D008621 ORTHO05D010242 4.5e-40 169.5 385 37.7
THA.LOC104798755 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 2.2e-39 167.2 338 40.2
C06p14570 Brassica napus HOM05D008621 ORTHO05D010242 1.1e-38 164.9 391 39.1
BcaC08g44053 Brassica carinata HOM05D008621 ORTHO05D010242 1.4e-38 164.5 391 38.9
BolC6t36635H Brassica oleracea HOM05D008621 ORTHO05D010242 1.4e-38 164.5 391 38.9
BcaB02g10936 Brassica carinata HOM05D008621 ORTHO05D010242 2.5e-38 163.7 383 37.9
A08p01770 Brassica napus HOM05D008621 ORTHO05D010242 7.1e-38 162.2 389 39.1
BraA05t20746Z Brassica rapa HOM05D008621 ORTHO05D010242 1.6e-37 161.0 392 38.8
A05p18520 Brassica napus HOM05D008621 ORTHO05D010242 7.9e-37 158.7 392 38.0
C03p91210 Brassica napus HOM05D008621 ORTHO05D010242 7.9e-37 158.7 391 38.1
BolC3t21434H Brassica oleracea HOM05D008621 ORTHO05D010242 5.7e-35 152.5 389 37.3
BcaC01g01366 Brassica carinata HOM05D008621 ORTHO05D010242 1.6e-34 151.0 389 37.0
CARHR043410 Cardamine hirsuta HOM05D008621 ORTHO05D010242 4.2e-30 136.3 281 42.7
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 2.2e-26 124.0 353 35.1
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 6.9e-25 119.0 352 34.1
Cpa.g.sc80.10 Carica papaya HOM05D008621 ORTHO05D010242 2.0e-24 117.5 330 34.8
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 1.4e-22 111.3 342 32.2
Aa31LG10G1950 Aethionema arabicum HOM05D008621 ORTHO05D010242 4.2e-22 109.8 446 28.3
Glyma.13G273200 Glycine max HOM05D001501 ORTHO05D001329 3.9e-20 103.2 361 31.0
Potri.001G372800 Populus trichocarpa HOM05D008621 ORTHO05D010242 1.3e-18 98.2 349 31.8
Manes.03G104500 Manihot esculenta HOM05D008621 ORTHO05D010242 2.2e-18 97.4 334 29.6
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 4.8e-18 96.3 352 33.0
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 1.1e-17 95.1 351 31.6
Medtr2g078620 Medicago truncatula HOM05D001501 ORTHO05D001329 1.1e-17 95.1 340 32.4
Phvul.005G069500 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 1.8e-17 94.4 334 29.0
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 1.8e-17 94.4 359 30.4
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 2.4e-17 94.0 349 33.2
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 3.1e-17 93.6 348 31.6
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 2.0e-16 90.9 343 32.4
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 4.5e-16 89.7 348 31.9
Manes.15G090300 Manihot esculenta HOM05D008621 ORTHO05D010242 1.1e-14 85.1 359 28.4
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 1.9e-14 84.3 363 29.5
Sabra16G0245400 Salix brachista HOM05D008621 ORTHO05D010242 5.5e-14 82.8 342 32.7
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 3.6e-13 80.1 357 29.4
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 8.0e-13 79.0 365 28.5
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 1.0e-12 78.6 360 29.7
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 1.4e-12 78.2 356 30.1
FAN16G1511 Fragaria x ananassa HOM05D001501 ORTHO05D001329 2.3e-12 77.4 349 31.2
Oeu051092.1 Olea europaea HOM05D010484 ORTHO05D010242 3.9e-12 76.6 358 31.0
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 8.8e-12 75.5 347 30.3
Cc05_g11620 Coffea canephora HOM05D010484 ORTHO05D010242 1.5e-11 74.7 349 30.7
Lj3g0018355 Lotus japonicus HOM05D001501 ORTHO05D001329 1.5e-11 74.7 381 28.6
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 2.0e-11 74.3 348 30.2
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 2.0e-11 74.3 352 28.7
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 2.6e-11 73.9 354 29.1
FAN21G4066 Fragaria x ananassa HOM05D001501 ORTHO05D001329 5.7e-11 72.8 343 31.8
arahy.Tifrunner.gnm1.ann1.B8RZEA Arachis hypogaea HOM05D001501 ORTHO05D001329 2.2e-10 70.9 344 28.8
MD11G1256500 Malus domestica HOM05D001501 ORTHO05D001329 3.7e-10 70.1 368 27.7
Cfa020621 Carpinus fangiana HOM05D001501 ORTHO05D001329 8.2e-10 68.9 143 41.3
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 8.2e-10 68.9 341 28.4
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 8.2e-10 68.9 349 30.1
HanXRQChr10g0302501 Helianthus annuus HOM05D016023 ORTHO05D010242 8.2e-10 68.9 336 25.9
RcHm_v2.0_Chr5g0032271 Rosa chinensis HOM05D001501 ORTHO05D001329 1.1e-09 68.6 347 32.3
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 1.8e-09 67.8 206 34.5
FvH4_3g19190 Fragaria vesca HOM05D001501 ORTHO05D001329 2.4e-09 67.4 348 30.7
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 4.1e-09 66.6 355 28.5
Psat5g241480 Pisum sativum HOM05D001501 ORTHO05D001329 3.5e-08 63.5 352 27.3
FAN25G3082 Fragaria x ananassa HOM05D001501 ORTHO05D001329 1.0e-07 62.0 351 30.5
DCAR_020999 Daucus carota HOM05D008621 ORTHO05D010242 1.3e-07 61.6 205 33.2
SalBow7G1441 Salvia bowleyana HOM05D010484 ORTHO05D010242 2.2e-07 60.8 206 32.5
CSS0041099 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 5.0e-07 59.7 226 31.9
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 5.0e-07 59.7 347 29.1
Nitab4.5_0000246g0060 Nicotiana tabacum HOM05D010484 ORTHO05D010242 6.5e-07 59.3 331 27.8
FAN11G0392 Fragaria x ananassa HOM05D001501 ORTHO05D001329 8.5e-07 58.9 347 30.8
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 8.5e-07 58.9 180 32.2
ClCG05G009220 Citrullus lanatus HOM05D001501 ORTHO05D001329 1.1e-06 58.5 301 28.6
Eucgr.F03292 Eucalyptus grandis HOM05D001501 ORTHO05D001329 1.1e-06 58.5 347 28.8
Nitab4.5_0000831g0120 Nicotiana tabacum HOM05D010484 ORTHO05D010242 1.1e-06 58.5 328 28.0
Rhsim04G0022900 Rhododendron simsii HOM05D010484 ORTHO05D010242 1.1e-06 58.5 324 27.2
TWI38G1368 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 1.1e-06 58.5 326 27.3
Peaxi162Scf00069g01925 Petunia axillaris HOM05D010484 ORTHO05D010242 1.9e-06 57.8 333 27.0
CANSAT35G0828 Cannabis sativa HOM05D001501 ORTHO05D001329 7.2e-06 55.8 367 27.0
CsaV3_3G019560 Cucumis sativus L. HOM05D001501 ORTHO05D001329 7.2e-06 55.8 265 29.1
PGR031G3944 Punica granatum HOM05D001501 ORTHO05D001329 7.2e-06 55.8 357 26.3


User provided reference genes

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