Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 8.4e-277 956.4 502 100.0
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 8.7e-274 946.4 503 99.4
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 7.6e-270 933.3 503 98.2
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 1.2e-174 617.1 529 71.5
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 2.4e-170 602.8 614 62.9
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 2.5e-164 582.8 614 61.9
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 9.7e-140 501.1 595 57.3
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 2.1e-126 456.8 622 52.7
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 3.7e-123 446.0 582 54.1
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.6e-118 430.6 599 50.6
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 1.0e-112 411.4 478 58.6
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 5.5e-111 405.6 473 58.8
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 5.5e-111 405.6 473 58.8
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 9.5e-111 404.8 499 56.5
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 2.2e-107 393.7 492 55.3
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 3.0e-88 330.1 511 47.9
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 1.5e-71 274.6 371 50.1
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 2.3e-64 250.8 719 33.5
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 3.4e-60 236.9 615 33.5
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 7.6e-60 235.7 671 34.1
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 8.4e-59 232.3 664 33.1
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 7.9e-57 225.7 633 35.2
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 7.9e-57 225.7 669 33.0
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 1.0e-56 225.3 650 33.7
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 2.3e-56 224.2 685 33.0
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 2.3e-56 224.2 666 34.2
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 6.7e-56 222.6 655 32.4
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 8.7e-56 222.2 648 34.7
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 1.6e-54 218.0 668 32.2
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.6e-54 218.0 666 34.1
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 2.1e-54 217.6 695 33.4
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.8e-54 217.2 667 32.2
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.8e-54 217.2 651 32.4
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 8.1e-54 215.7 666 33.5
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 1.1e-53 215.3 681 33.2
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.1e-53 215.3 660 32.0
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 1.4e-53 214.9 682 32.7
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 3.1e-53 213.8 658 33.1
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.0e-53 213.4 613 33.8
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 5.3e-53 213.0 671 32.9
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 5.3e-53 213.0 699 31.3
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 6.9e-53 212.6 667 34.3
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 6.9e-53 212.6 678 34.1
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 1.5e-52 211.5 701 31.5
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 2.0e-52 211.1 650 31.4
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 4.5e-52 209.9 682 32.0
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 4.5e-52 209.9 651 32.3
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 5.8e-52 209.5 684 33.6
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 7.6e-52 209.1 677 32.2
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.3e-51 208.4 671 33.4
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 2.2e-51 207.6 644 33.1
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 2.9e-51 207.2 569 35.1
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 2.9e-51 207.2 666 31.8
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.9e-50 204.5 666 32.3
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 2.5e-50 204.1 655 33.9
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 2.5e-50 204.1 670 32.8
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 5.5e-50 203.0 494 36.8
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 9.3e-50 202.2 712 31.9
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 2.7e-49 200.7 605 35.5
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 7.9e-49 199.1 677 32.2
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.3e-48 198.4 649 32.7
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.8e-48 198.0 683 31.9
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 3.9e-48 196.8 627 33.2
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.9e-48 196.8 605 32.7
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 5.1e-48 196.4 659 32.6
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 5.1e-48 196.4 688 31.5
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 5.1e-48 196.4 671 31.9
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 8.7e-48 195.7 699 31.0
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 1.1e-47 195.3 475 36.6
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 1.5e-47 194.9 622 33.6
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 2.5e-47 194.1 682 31.8
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 3.3e-47 193.7 667 32.2
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 4.3e-47 193.4 536 33.4
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 9.6e-47 192.2 545 34.3
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.6e-46 191.4 612 33.5
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 2.1e-46 191.0 607 32.6
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 2.8e-46 190.7 685 30.4
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 4.8e-46 189.9 674 32.9
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 1.1e-45 188.7 605 33.6
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 1.4e-45 188.3 678 31.9
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 4.0e-45 186.8 562 32.9
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 9.0e-45 185.7 547 33.3
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.2e-44 185.3 562 33.3
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 2.0e-44 184.5 693 30.4
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 2.6e-44 184.1 553 35.8
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 3.4e-44 183.7 612 32.2
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 1.0e-43 182.2 654 30.1
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 4.9e-43 179.9 516 33.9
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 8.4e-43 179.1 601 33.6
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.1e-42 178.7 601 32.3
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 2.5e-42 177.6 696 30.3
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.5e-42 177.6 502 36.3
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.2e-42 177.2 657 33.0
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 7.1e-42 176.0 731 30.1
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 1.2e-41 175.3 602 31.6
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.6e-41 174.9 595 31.4
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 1.6e-41 174.9 599 31.7
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.6e-41 174.9 637 30.8
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.1e-41 174.5 501 35.3
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 4.6e-41 173.3 504 35.7
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 4.6e-41 173.3 596 29.5
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.3e-40 171.0 632 32.0
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 2.3e-40 171.0 607 33.1
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 3.0e-40 170.6 768 29.0
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 3.9e-40 170.2 669 30.2
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 8.7e-40 169.1 655 30.1
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.9e-39 167.9 622 31.2
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 1.9e-39 167.9 531 34.7
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.5e-39 167.5 644 30.4
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 7.4e-39 166.0 676 30.0
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.6e-38 164.9 655 29.9
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 3.7e-38 163.7 592 31.6
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 8.2e-38 162.5 724 28.2
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 8.2e-38 162.5 579 31.6
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.1e-37 160.2 661 30.7
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 9.0e-37 159.1 649 30.7
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 2.0e-36 157.9 477 35.4
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 2.0e-36 157.9 661 28.7
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.4e-36 157.1 549 33.7
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 1.2e-33 148.7 558 29.7
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 2.1e-33 147.9 651 29.6
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 2.1e-33 147.9 523 30.6
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 2.7e-33 147.5 584 30.3
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 2.7e-33 147.5 650 29.1
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 3.6e-33 147.1 446 33.6
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 2.3e-32 144.4 642 30.7
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 6.7e-32 142.9 649 28.4
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 5.7e-31 139.8 409 35.7
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 9.7e-31 139.0 688 28.6
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 9.7e-31 139.0 643 30.2
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 3.1e-29 134.0 518 32.0
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 4.5e-28 130.2 587 27.6
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.3e-27 128.6 678 26.3
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 3.8e-27 127.1 676 28.8
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 2.7e-25 120.9 548 30.1
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 6.7e-24 116.3 262 35.5
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 6.7e-24 116.3 699 26.0
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.1e-23 115.5 678 27.3
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.3e-22 112.1 415 29.4
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 6.3e-22 109.8 634 26.5
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.1e-21 109.0 602 27.4
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 3.2e-18 97.4 277 35.0
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.2e-18 97.1 136 47.1
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 7.2e-18 96.3 191 37.7
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.6e-17 94.0 552 28.4
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 6.7e-16 89.7 491 27.3
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 2.2e-14 84.7 335 29.6
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 2.8e-14 84.3 131 43.5
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 1.1e-13 82.4 422 30.1
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 1.8e-13 81.6 139 43.9
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 3.1e-13 80.9 319 33.9
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 4.1e-13 80.5 158 36.7
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 7.0e-13 79.7 148 40.5
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 1.2e-12 79.0 426 30.8
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.0e-12 78.2 336 32.4
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 3.5e-12 77.4 71 54.9
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.7e-11 75.1 404 30.7
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 3.8e-11 73.9 222 31.5
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 8.5e-11 72.8 529 26.5
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.6e-09 68.6 91 42.9
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 8.0e-09 66.2 57 57.9
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 2.3e-08 64.7 257 30.4
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 4.4e-07 60.5 87 49.4
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 9.7e-07 59.3 121 38.0
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 2.8e-06 57.8 218 28.0


User provided reference genes

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