Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48454 Brassica carinata HOM05D001101 ORTHO05D000893 7.6e-101 370.5 194 100.0
A01p38980 Brassica napus HOM05D001101 ORTHO05D000893 1.1e-78 297.0 301 61.1
BraA01t03944Z Brassica rapa HOM05D001101 ORTHO05D000893 1.1e-78 297.0 301 61.1
BolC1t04914H Brassica oleracea HOM05D001101 ORTHO05D000893 4.1e-62 241.9 132 99.2
C01p49590 Brassica napus HOM05D001101 ORTHO05D000893 1.2e-61 240.4 132 98.5
BcaB04g20957 Brassica carinata HOM05D001101 ORTHO05D000893 8.0e-58 227.6 161 78.3
Thhalv10020396m.g Eutrema salsugineum HOM05D001101 ORTHO05D000893 4.7e-50 201.8 165 70.3
Sp3g13070 Schrenkiella parvula HOM05D001101 ORTHO05D000893 3.4e-48 195.7 165 67.9
A03p39010 Brassica napus HOM05D001101 ORTHO05D000893 5.7e-48 194.9 164 70.1
AL3G27180 Arabidopsis lyrata HOM05D001101 ORTHO05D000893 3.2e-46 189.1 165 67.3
C03p47290 Brassica napus HOM05D001101 ORTHO05D000893 1.6e-45 186.8 164 70.7
BolC3t16997H Brassica oleracea HOM05D001101 ORTHO05D000893 1.6e-45 186.8 164 70.7
CARHR089800 Cardamine hirsuta HOM05D001101 ORTHO05D000893 1.7e-44 183.3 163 68.1
BraA03t13051Z Brassica rapa HOM05D001101 ORTHO05D000893 2.3e-44 183.0 165 67.9
AT3G14860 Arabidopsis thaliana HOM05D001101 ORTHO05D000893 2.6e-40 169.5 165 64.8
Carub.0003s1452 Capsella rubella HOM05D001101 ORTHO05D000893 7.5e-40 167.9 165 67.3
Aa31LG8G2070 Aethionema arabicum HOM05D001101 ORTHO05D000893 8.1e-34 147.9 169 58.0
THA.LOC104815575 Tarenaya hassleriana HOM05D001101 ORTHO05D000893 2.3e-20 103.2 170 54.1
COL.COLO4_17509 Corchorus olitorius HOM05D001101 ORTHO05D000893 9.9e-16 87.8 155 43.9
Manes.15G096600 Manihot esculenta HOM05D001101 ORTHO05D000893 1.3e-15 87.4 172 42.4
Gohir.A04G043400 Gossypium hirsutum HOM05D001101 ORTHO05D000893 1.7e-15 87.0 171 42.7
Cpa.g.sc77.33 Carica papaya HOM05D001101 ORTHO05D000893 2.9e-15 86.3 176 42.6
Thecc.07G126600 Theobroma cacao HOM05D001101 ORTHO05D000893 4.9e-15 85.5 171 41.5
Gohir.D05G340200 Gossypium hirsutum HOM05D001101 ORTHO05D000893 6.4e-15 85.1 171 42.1
Gorai.009G366600 Gossypium raimondii HOM05D001101 ORTHO05D000893 6.4e-15 85.1 171 42.1
Lj3g0027156 Lotus japonicus HOM05D001101 ORTHO05D000893 1.9e-14 83.6 159 42.1
CANSAT35G0774 Cannabis sativa HOM05D001101 ORTHO05D000893 2.4e-14 83.2 174 39.1
Duzib213G1057 Durio zibethinus HOM05D001101 ORTHO05D000893 3.2e-14 82.8 170 42.9
AUR62037563 Chenopodium quinoa HOM05D001101 ORTHO05D000893 1.2e-13 80.9 157 42.7
Eucgr.F03283 Eucalyptus grandis HOM05D001101 ORTHO05D000893 1.0e-12 77.8 170 41.8
CsaV3_4G008130 Cucumis sativus L. HOM05D001101 ORTHO05D000893 1.3e-12 77.4 169 40.8
Potri.001G387500 Populus trichocarpa HOM05D001101 ORTHO05D000893 1.3e-12 77.4 157 44.6
Prupe.4G160200 Prunus persica HOM05D001101 ORTHO05D000893 1.7e-12 77.0 174 42.0
Lj8A147G49 Lonicera japonica HOM05D001101 ORTHO05D000893 3.0e-12 76.3 171 41.5
AUR62019596 Chenopodium quinoa HOM05D001101 ORTHO05D000893 5.1e-12 75.5 157 41.4
Potri.011G107800 Populus trichocarpa HOM05D001101 ORTHO05D000893 6.6e-12 75.1 160 45.0
Sabra16G0254800 Salix brachista HOM05D001101 ORTHO05D000893 1.1e-11 74.3 151 44.4
Manes.03G099900 Manihot esculenta HOM05D001101 ORTHO05D000893 1.5e-11 73.9 175 39.4
ClCG07G010190 Citrullus lanatus HOM05D001101 ORTHO05D000893 1.9e-11 73.6 172 39.5
Actinidia18809 Actinidia chinensis HOM05D001101 ORTHO05D000893 3.3e-11 72.8 155 41.3
Dinv18380 Davidia involucrata HOM05D001101 ORTHO05D000893 3.3e-11 72.8 157 42.7
CiPaw.12G112600 Carya illinoinensis HOM05D001101 ORTHO05D000893 7.3e-11 71.6 171 39.8
MELO3C016123.2 Cucumis melo HOM05D001101 ORTHO05D000893 9.6e-11 71.2 173 39.3
TWI39G0632 Tripterygium wilfordii HOM05D001101 ORTHO05D000893 9.6e-11 71.2 158 42.4
arahy.Tifrunner.gnm1.ann1.R550IY Arachis hypogaea HOM05D001101 ORTHO05D000893 1.3e-10 70.9 186 39.8
QL08p025698 Quercus lobata HOM05D001101 ORTHO05D000893 1.3e-10 70.9 157 41.4
arahy.Tifrunner.gnm1.ann1.I5PA0N Arachis hypogaea HOM05D001101 ORTHO05D000893 1.6e-10 70.5 186 39.8
Rhsim06G0210100 Rhododendron simsii HOM05D001101 ORTHO05D000893 2.1e-10 70.1 175 38.9
Sabra11G0095800 Salix brachista HOM05D001101 ORTHO05D000893 2.1e-10 70.1 160 42.5
SGA_v2.0_scaffold73G24397 Striga asiatica HOM05D001101 ORTHO05D000893 2.1e-10 70.1 158 41.1
ECA236G1330 Erigeron canadensis HOM05D001101 ORTHO05D000893 3.6e-10 69.3 152 43.4
Medtr2g075860 Medicago truncatula HOM05D001101 ORTHO05D000893 3.6e-10 69.3 178 44.9
TWI38G2134 Tripterygium wilfordii HOM05D001101 ORTHO05D000893 6.2e-10 68.6 158 41.1
vmacro11953 Vaccinium macrocarpon HOM05D001101 ORTHO05D000893 6.2e-10 68.6 181 36.5
Ca_06629_v3 Cicer arietinum L. HOM05D001101 ORTHO05D000893 8.1e-10 68.2 158 39.2
PGR031G1547 Punica granatum HOM05D001101 ORTHO05D000893 8.1e-10 68.2 161 41.6
Ciclev10019902m.g Citrus clementina HOM05D001101 ORTHO05D000893 1.1e-09 67.8 176 38.1
Sed0014809 Sechium edule HOM05D001101 ORTHO05D000893 1.1e-09 67.8 210 36.7
Lalb_Chr03g0031231 Lupinus albus HOM05D001101 ORTHO05D000893 1.8e-09 67.0 161 38.5
Peaxi162Scf00111g01465 Petunia axillaris HOM05D001101 ORTHO05D000893 1.8e-09 67.0 172 36.6
DCAR_013271 Daucus carota HOM05D001101 ORTHO05D000893 2.4e-09 66.6 171 36.8
FAN11G2831 Fragaria x ananassa HOM05D001101 ORTHO05D000893 2.4e-09 66.6 153 39.9
Hma1.2p1_1650F.1_g295650 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 2.4e-09 66.6 172 36.6
Eucgr.L01895 Eucalyptus grandis HOM05D001101 ORTHO05D000893 3.1e-09 66.2 133 43.6
FvH4_3g18140 Fragaria vesca HOM05D001101 ORTHO05D000893 4.0e-09 65.9 157 40.8
FAN16G1275 Fragaria x ananassa HOM05D001101 ORTHO05D000893 4.0e-09 65.9 157 40.8
Medtr8g058280 Medicago truncatula HOM05D001101 ORTHO05D000893 4.0e-09 65.9 152 41.4
Hma1.2p1_1872F.1_g306120 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 5.3e-09 65.5 172 36.0
Ah.06g185540 Amaranthus hybridus HOM05D001101 ORTHO05D000893 1.2e-08 64.3 170 37.6
TAR627G0318 Trochodendron aralioides HOM05D001101 ORTHO05D000893 1.2e-08 64.3 154 37.7
Cc05_g10950 Coffea canephora HOM05D001101 ORTHO05D000893 1.5e-08 63.9 174 37.4
RcHm_v2.0_Chr5g0030571 Rosa chinensis HOM05D001101 ORTHO05D000893 1.5e-08 63.9 169 38.5
FAN21G1665 Fragaria x ananassa HOM05D001101 ORTHO05D000893 2.6e-08 63.2 153 38.6
FAN25G0535 Fragaria x ananassa HOM05D001101 ORTHO05D000893 2.6e-08 63.2 153 38.6
Cfa019545 Carpinus fangiana HOM05D001101 ORTHO05D000893 3.4e-08 62.8 174 37.9
TAR626G0991 Trochodendron aralioides HOM05D001101 ORTHO05D000893 3.4e-08 62.8 150 37.3
Nn3g21084 Nelumbo nucifera HOM05D001101 ORTHO05D000893 4.5e-08 62.4 185 36.2
Sopen07g030570 Solanum pennellii HOM05D001101 ORTHO05D000893 4.5e-08 62.4 165 36.4
CSS0019453 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 7.6e-08 61.6 156 36.5
HanXRQChr04g0108531 Helianthus annuus HOM05D001101 ORTHO05D000893 7.6e-08 61.6 173 42.2
Nitab4.5_0016997g0010 Nicotiana tabacum HOM05D001101 ORTHO05D000893 7.6e-08 61.6 157 37.6
MSTRG.6684 Avicennia marina HOM05D001101 ORTHO05D000893 9.9e-08 61.2 159 40.3
Haze_09306 Corylus avellana HOM05D001101 ORTHO05D000893 9.9e-08 61.2 172 36.0
Psat0s2485g0080 Pisum sativum HOM05D001101 ORTHO05D000893 9.9e-08 61.2 173 42.2
unitig_747.g21588 Utricularia gibba HOM05D001101 ORTHO05D000893 1.7e-07 60.5 169 36.7
Solyc07g062300.3 Solanum lycopersicum HOM05D001101 ORTHO05D000893 3.8e-07 59.3 165 35.8
TPR.G16052 Trifolium pratense HOM05D001101 ORTHO05D000893 3.8e-07 59.3 140 40.0
GSVIVG01014170001 Vitis vinifera HOM05D001101 ORTHO05D000893 3.8e-07 59.3 159 39.6
Aqoxy1G01983 Aquilegia oxysepala HOM05D001101 ORTHO05D000893 4.9e-07 58.9 113 40.7
Nitab4.5_0000788g0050 Nicotiana tabacum HOM05D001101 ORTHO05D000893 8.4e-07 58.2 157 38.2
VMungo1127G0294 Vigna mungo HOM05D001101 ORTHO05D000893 1.1e-06 57.8 171 35.7
Oeu031024.1 Olea europaea HOM05D001101 ORTHO05D000893 1.4e-06 57.4 159 35.8
SalBow1G6953 Salvia bowleyana HOM05D001101 ORTHO05D000893 1.4e-06 57.4 176 35.2
MBI06_g16699_MAGBIO Magnolia biondii HOM05D001101 ORTHO05D000893 1.9e-06 57.0 124 35.5
SalBow8G2079 Salvia bowleyana HOM05D001101 ORTHO05D000893 1.9e-06 57.0 176 35.2
PGSC0003DMG400007097 Solanum tuberosum HOM05D001101 ORTHO05D000893 7.1e-06 55.1 165 34.5
EL10Ac9g23028 Beta vulgaris HOM05D001101 ORTHO05D000893 9.3e-06 54.7 185 33.5


User provided reference genes

Program Settings