Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48445 Brassica carinata HOM05D007501 ORTHO05D009528 1.8e-151 539.3 274 100.0
C01p49690 Brassica napus HOM05D007501 ORTHO05D009528 4.6e-83 312.0 157 99.4
BolC1t04925H Brassica oleracea HOM05D007501 ORTHO05D009528 1.5e-81 307.0 159 98.1
BraA01t03953Z Brassica rapa HOM05D007501 ORTHO05D009528 2.1e-80 303.1 159 96.9
A01p39060 Brassica napus HOM05D007501 ORTHO05D009528 1.5e-78 297.0 158 95.6
Thhalv10021658m.g Eutrema salsugineum HOM05D007501 ORTHO05D009528 7.8e-67 258.1 160 84.4
Sp3g12990 Schrenkiella parvula HOM05D007501 ORTHO05D009528 2.8e-64 249.6 161 78.9
AL3G27070 Arabidopsis lyrata HOM05D007501 ORTHO05D009528 1.1e-63 247.7 160 81.2
CARHR089710 Cardamine hirsuta HOM05D007501 ORTHO05D009528 1.4e-63 247.3 162 80.9
AT3G14760 Arabidopsis thaliana HOM05D007501 ORTHO05D009528 3.1e-63 246.1 160 81.9
Carub.0003s1443 Capsella rubella HOM05D007501 ORTHO05D009528 3.1e-63 246.1 160 80.6
Aa31LG8G1980 Aethionema arabicum HOM05D007501 ORTHO05D009528 6.6e-50 201.8 169 66.9
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 2.4e-39 166.8 167 58.1
GSVIVG01014087001 Vitis vinifera HOM05D007501 ORTHO05D009528 1.8e-26 124.0 168 48.2
Gorai.007G332200 Gossypium raimondii HOM05D007501 ORTHO05D009528 3.3e-25 119.8 187 45.5
Gohir.A11G289800 Gossypium hirsutum HOM05D007501 ORTHO05D009528 4.3e-25 119.4 184 46.7
Gohir.D11G302600 Gossypium hirsutum HOM05D007501 ORTHO05D009528 2.8e-24 116.7 187 44.4
CSS0000849 Camellia sinensis var. sinensis HOM05D007501 ORTHO05D009528 2.4e-23 113.6 174 44.3
Manes.15G099000 Manihot esculenta HOM05D007501 ORTHO05D009528 2.4e-23 113.6 181 43.1
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 6.9e-23 112.1 160 43.8
RcHm_v2.0_Chr5g0029351 Rosa chinensis HOM05D007501 ORTHO05D009528 6.9e-23 112.1 176 40.9
MD11G1270900 Malus domestica HOM05D007501 ORTHO05D009528 2.0e-22 110.5 276 31.9
Manes.03G078700 Manihot esculenta HOM05D007501 ORTHO05D009528 3.4e-22 109.8 194 41.2
QL08p025249 Quercus lobata HOM05D007501 ORTHO05D009528 4.5e-22 109.4 179 41.3
Prupe.4G155600 Prunus persica HOM05D007501 ORTHO05D009528 5.9e-22 109.0 175 41.7
Dinv13355 Davidia involucrata HOM05D007501 ORTHO05D009528 7.6e-22 108.6 166 45.2
FvH4_3g17620 Fragaria vesca HOM05D007501 ORTHO05D009528 7.6e-22 108.6 176 40.3
FAN11G3003 Fragaria x ananassa HOM05D007501 ORTHO05D009528 7.6e-22 108.6 176 40.3
COL.COLO4_03607 Corchorus olitorius HOM05D007501 ORTHO05D009528 1.0e-21 108.2 182 44.0
FAN21G3657 Fragaria x ananassa HOM05D007501 ORTHO05D009528 1.7e-21 107.5 175 40.6
FAN25G1377 Fragaria x ananassa HOM05D007501 ORTHO05D009528 2.2e-21 107.1 175 40.0
HanXRQChr11g0331231 Helianthus annuus HOM05D007501 ORTHO05D009528 8.5e-21 105.1 187 41.2
TWI39G1127 Tripterygium wilfordii HOM05D007501 ORTHO05D009528 1.1e-20 104.8 144 47.2
DCAR_019618 Daucus carota HOM05D007501 ORTHO05D009528 1.9e-20 104.0 184 38.6
Duzib213G0875 Durio zibethinus HOM05D007501 ORTHO05D009528 3.2e-20 103.2 174 43.1
Potri.011G103500 Populus trichocarpa HOM05D007501 ORTHO05D009528 4.2e-20 102.8 178 40.4
Thecc.07G134800 Theobroma cacao HOM05D007501 ORTHO05D009528 4.2e-20 102.8 118 53.4
Ciclev10024060m.g Citrus clementina HOM05D007501 ORTHO05D009528 5.5e-20 102.4 167 39.5
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 7.2e-20 102.1 169 42.6
Cc05_g10640 Coffea canephora HOM05D007501 ORTHO05D009528 9.3e-20 101.7 182 41.8
Cfa019508 Carpinus fangiana HOM05D007501 ORTHO05D009528 2.1e-19 100.5 172 39.5
PSO675G1715 Papaver somniferum HOM05D007501 ORTHO05D009528 2.7e-19 100.1 175 39.4
MD03G1250700 Malus domestica HOM05D007501 ORTHO05D009528 1.4e-18 97.8 146 41.8
PSO541G4098 Papaver somniferum HOM05D007501 ORTHO05D009528 3.0e-18 96.7 174 37.4
Oeu059251.1 Olea europaea HOM05D007501 ORTHO05D009528 3.9e-18 96.3 170 38.2
Sabra11G0077300 Salix brachista HOM05D007501 ORTHO05D009528 5.1e-18 95.9 173 37.6
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 6.7e-18 95.5 157 41.4
PGR083G0065 Punica granatum HOM05D007501 ORTHO05D009528 6.7e-18 95.5 164 45.1
arahy.Tifrunner.gnm1.ann1.5U50EQ Arachis hypogaea HOM05D007501 ORTHO05D009528 8.8e-18 95.1 164 38.4
PGSC0003DMG400021255 Solanum tuberosum HOM05D007501 ORTHO05D009528 1.1e-17 94.7 168 36.9
Sabra11G0082200 Salix brachista HOM05D007501 ORTHO05D009528 2.5e-17 93.6 173 37.0
vmacro09418 Vaccinium macrocarpon HOM05D007501 ORTHO05D009528 3.3e-17 93.2 149 43.0
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 7.4e-17 92.0 151 39.7
Solyc10g007490.2 Solanum lycopersicum HOM05D007501 ORTHO05D009528 9.7e-17 91.7 164 36.0
ECA236G0060 Erigeron canadensis HOM05D007501 ORTHO05D009528 1.3e-16 91.3 161 39.8
Cpa.g.sc682.2 Carica papaya HOM05D007501 ORTHO05D009528 3.7e-16 89.7 158 37.3
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 1.1e-15 88.2 118 50.8
Sopen10g003430 Solanum pennellii HOM05D007501 ORTHO05D009528 1.8e-15 87.4 164 34.8
RhsimUnG0206300 Rhododendron simsii HOM05D007501 ORTHO05D009528 2.4e-15 87.0 151 41.1
EL10Ac4g08429 Beta vulgaris HOM05D007501 ORTHO05D009528 3.1e-15 86.7 141 40.4
Glyma.15G210500 Glycine max HOM05D007501 ORTHO05D009528 9.1e-15 85.1 115 46.1
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 1.2e-14 84.7 115 45.2
Medtr8g042500 Medicago truncatula HOM05D007501 ORTHO05D009528 1.2e-14 84.7 122 45.1
Aqoxy4G00171 Aquilegia oxysepala HOM05D007501 ORTHO05D009528 3.4e-14 83.2 167 36.5
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 3.4e-14 83.2 197 36.5
AUR62019665 Chenopodium quinoa HOM05D007501 ORTHO05D009528 1.3e-13 81.3 90 48.9
Lj3g0021891 Lotus japonicus HOM05D007501 ORTHO05D009528 1.3e-13 81.3 194 33.5
CiPaw.12G110200 Carya illinoinensis HOM05D007501 ORTHO05D009528 1.7e-13 80.9 166 36.1
Peaxi162Scf01338g00001 Petunia axillaris HOM05D007501 ORTHO05D009528 2.2e-13 80.5 159 36.5
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 2.9e-13 80.1 148 37.2
SGA_v2.0_scaffold73G24380 Striga asiatica HOM05D007501 ORTHO05D009528 5.0e-13 79.3 177 35.0
Psat4g135600 Pisum sativum HOM05D007501 ORTHO05D009528 6.5e-13 79.0 123 44.7
ATR0681G022 Amborella trichopoda HOM05D007501 ORTHO05D009528 1.1e-12 78.2 140 37.9
TPR.G16483 Trifolium pratense HOM05D007501 ORTHO05D009528 2.5e-12 77.0 120 43.3
Nitab4.5_0001140g0140 Nicotiana tabacum HOM05D007501 ORTHO05D009528 4.2e-12 76.3 132 40.9
Nitab4.5_0008460g0030 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.6e-11 74.3 157 38.9
arahy.Tifrunner.gnm1.ann1.652QPS Arachis hypogaea HOM05D007501 ORTHO05D009528 2.7e-11 73.6 162 36.4
Potri.001G382800 Populus trichocarpa HOM05D007501 ORTHO05D009528 2.7e-11 73.6 280 27.5
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 2.7e-11 73.6 132 39.4
SalBow8G3616 Salvia bowleyana HOM05D007501 ORTHO05D009528 7.9e-11 72.0 125 38.4
Peaxi162Scf00111g00124 Petunia axillaris HOM05D007501 ORTHO05D009528 1.8e-10 70.9 131 37.4
CsaV3_4G032800 Cucumis sativus L. HOM05D007501 ORTHO05D009528 2.3e-10 70.5 161 36.6
CANSAT56G4361 Cannabis sativa HOM05D007501 ORTHO05D009528 5.1e-10 69.3 195 33.8
Sed0021060 Sechium edule HOM05D007501 ORTHO05D009528 3.3e-09 66.6 65 52.3
MELO3C027342.2 Cucumis melo HOM05D007501 ORTHO05D009528 4.4e-09 66.2 139 36.7
Sopen07g030380 Solanum pennellii HOM05D007501 ORTHO05D009528 7.4e-09 65.5 132 39.4
Zm00001eb055040 Zea mays HOM05D007501 ORTHO05D009528 3.7e-08 63.2 68 52.9
Migut.M00689 Erythranthe guttata HOM05D007501 ORTHO05D009528 1.1e-07 61.6 187 31.6
SMO367G0928 Selaginella moellendorffii HOM05D002803 ORTHO05D003089 1.4e-07 61.2 120 31.7
PGSC0003DMG400043590 Solanum tuberosum HOM05D007501 ORTHO05D009528 3.1e-07 60.1 132 37.1
ClCG11G017140 Citrullus lanatus HOM05D007501 ORTHO05D009528 4.1e-07 59.7 38 68.4
Dinv26703 Davidia involucrata HOM05D007501 ORTHO05D009528 4.1e-07 59.7 140 33.6
Os02g0320600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 4.1e-07 59.7 91 41.8
Nitab4.5_0000383g0020 Nicotiana tabacum HOM05D007501 ORTHO05D009528 6.9e-07 58.9 107 35.5
Zm00001eb314570 Zea mays HOM05D007501 ORTHO05D009528 9.1e-07 58.5 57 50.9
Os02g0321600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 1.5e-06 57.8 30 73.3
Peaxi162Scf00069g01713 Petunia axillaris HOM05D007501 ORTHO05D009528 1.5e-06 57.8 27 88.9
CAN.G375.54 Capsicum annuum HOM05D007501 ORTHO05D009528 2.0e-06 57.4 132 31.8
SEGI_41065 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 4.5e-06 56.2 33 63.6
MD13G1047600 Malus domestica HOM05D002803 ORTHO05D003089 7.7e-06 55.5 44 54.5


User provided reference genes

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