Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 2.9e-126 455.3 242 100.0
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 1.9e-85 319.7 215 84.2
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 2.8e-52 209.5 207 62.3
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 2.1e-47 193.4 204 60.3
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 7.7e-42 174.9 207 58.0
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 1.1e-40 171.0 207 54.1
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 4.2e-40 169.1 207 52.7
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 5.1e-38 162.2 205 52.7
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 2.6e-37 159.8 203 52.2
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 3.3e-37 159.5 206 55.3
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 4.4e-37 159.1 206 55.3
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 4.4e-37 159.1 206 55.3
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 4.4e-37 159.1 206 55.3
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 2.2e-36 156.8 206 52.4
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 8.2e-36 154.8 206 53.9
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 1.1e-35 154.5 206 55.3
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 5.9e-34 148.7 206 53.9
C01p49830 Brassica napus HOM05D004998 ORTHO05D006104 3.8e-33 146.0 87 87.4
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 3.0e-30 136.3 130 65.4
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 2.0e-29 133.7 209 51.2
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 1.8e-27 127.1 216 44.4
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 1.6e-26 124.0 178 50.6
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 7.7e-26 121.7 192 52.1
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 1.9e-24 117.1 163 52.8
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 2.7e-23 113.2 177 49.2
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 4.4e-21 105.9 216 41.2
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 7.5e-21 105.1 204 46.1
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 1.7e-20 104.0 209 43.5
BcaB01g04584 Brassica carinata HOM05D004998 ORTHO05D006104 1.4e-19 100.9 97 66.0
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 2.4e-19 100.1 206 44.7
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 4.1e-19 99.4 215 40.0
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 5.7e-13 79.0 213 35.7
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.7e-12 77.4 222 34.2
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 2.8e-12 76.6 210 31.0
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 3.7e-12 76.3 159 42.8
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 3.7e-12 76.3 218 33.9
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 4.9e-12 75.9 224 33.0
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 6.3e-12 75.5 201 35.3
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 1.4e-11 74.3 219 34.2
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.4e-11 74.3 219 35.2
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 1.8e-11 73.9 223 33.6
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 1.8e-11 73.9 217 33.6
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 3.1e-11 73.2 217 32.7
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 4.1e-11 72.8 217 33.6
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 4.1e-11 72.8 219 33.3
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 4.1e-11 72.8 209 32.5
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 5.4e-11 72.4 219 32.9
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 9.2e-11 71.6 212 34.0
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 3.5e-10 69.7 211 31.8
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 4.5e-10 69.3 208 34.6
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 5.9e-10 68.9 218 33.0
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 5.9e-10 68.9 207 34.8
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 7.7e-10 68.6 201 34.8
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 7.7e-10 68.6 206 33.0
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 7.7e-10 68.6 210 33.3
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 1.0e-09 68.2 208 33.7
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 1.3e-09 67.8 207 34.3
A01p36350 Brassica napus HOM05D004998 ORTHO05D006104 2.3e-09 67.0 68 55.9
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 2.3e-09 67.0 204 33.8
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 2.3e-09 67.0 220 31.8
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 2.3e-09 67.0 216 31.9
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 3.8e-09 66.2 213 33.8
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 5.0e-09 65.9 209 34.0
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 6.6e-09 65.5 218 31.2
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 8.6e-09 65.1 212 32.1
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 8.6e-09 65.1 217 32.3
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 8.6e-09 65.1 212 30.7
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 1.1e-08 64.7 223 33.2
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 1.5e-08 64.3 212 32.5
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 1.5e-08 64.3 218 31.7
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 1.9e-08 63.9 206 33.0
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.9e-08 63.9 225 31.1
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 2.5e-08 63.5 225 31.1
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 3.3e-08 63.2 210 32.4
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 3.3e-08 63.2 212 31.6
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 3.3e-08 63.2 216 32.4
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 3.3e-08 63.2 216 32.4
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 3.3e-08 63.2 216 32.4
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 3.3e-08 63.2 213 34.7
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 4.3e-08 62.8 213 32.4
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 5.6e-08 62.4 218 31.7
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 7.3e-08 62.0 211 32.7
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 7.3e-08 62.0 218 30.3
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 7.3e-08 62.0 203 32.0
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 9.5e-08 61.6 218 30.7
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 1.6e-07 60.8 214 29.9
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 1.6e-07 60.8 216 33.3
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 1.6e-07 60.8 213 31.9
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 2.1e-07 60.5 185 30.3
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 2.1e-07 60.5 213 32.4
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 6.1e-07 58.9 169 33.1
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 8.0e-07 58.5 208 30.8
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.4e-06 57.8 226 30.5
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.4e-06 57.8 221 31.2
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 1.4e-06 57.8 227 29.5
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 1.8e-06 57.4 210 29.0
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 1.8e-06 57.4 206 32.5
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 2.3e-06 57.0 214 30.4
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 3.0e-06 56.6 206 31.6
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 5.2e-06 55.8 223 30.5
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 6.8e-06 55.5 120 38.3
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 8.9e-06 55.1 223 30.5


User provided reference genes

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