Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48432 Brassica carinata HOM05D000959 ORTHO05D000775 2.3e-31 138.3 69 100.0
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 8.6e-23 109.8 53 100.0
A03p11720 Brassica napus HOM05D000959 ORTHO05D000775 6.9e-20 100.1 85 67.1
BolC3t13817H Brassica oleracea HOM05D000959 ORTHO05D000775 6.9e-20 100.1 85 67.1
BraA03t10483Z Brassica rapa HOM05D000959 ORTHO05D000775 1.5e-19 99.0 85 65.9
C03p13680 Brassica napus HOM05D000959 ORTHO05D000775 2.0e-19 98.6 85 65.9
BcaC01g06519 Brassica carinata HOM05D000959 ORTHO05D000775 3.4e-19 97.8 85 67.1
BcaB08g36254 Brassica carinata HOM05D000959 ORTHO05D000775 1.7e-18 95.5 85 64.7
AT5G59480 Arabidopsis thaliana HOM05D000959 ORTHO05D000775 4.9e-18 94.0 51 88.2
AL8G35950 Arabidopsis lyrata HOM05D000959 ORTHO05D000775 8.4e-18 93.2 51 88.2
BcaC04g19765 Brassica carinata HOM05D000959 ORTHO05D000775 1.4e-17 92.4 85 63.5
C09p51880 Brassica napus HOM05D000959 ORTHO05D000775 1.4e-17 92.4 85 63.5
BolC9t58050H Brassica oleracea HOM05D000959 ORTHO05D000775 1.4e-17 92.4 85 63.5
A10p16690 Brassica napus HOM05D000959 ORTHO05D000775 1.9e-17 92.0 85 62.4
Sp6g21170 Schrenkiella parvula HOM05D000959 ORTHO05D000775 2.4e-17 91.7 51 86.3
BraA10t43750Z Brassica rapa HOM05D000959 ORTHO05D000775 5.4e-17 90.5 85 61.2
BcaB01g04574 Brassica carinata HOM05D000959 ORTHO05D000775 9.3e-17 89.7 85 62.4
Thhalv10014321m.g Eutrema salsugineum HOM05D000959 ORTHO05D000775 2.1e-16 88.6 85 61.2
Carub.0008s2015 Capsella rubella HOM05D000959 ORTHO05D000775 4.6e-16 87.4 51 80.4
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 4.8e-13 77.4 44 77.3
CARHR285850 Cardamine hirsuta HOM05D000959 ORTHO05D000775 6.2e-13 77.0 51 78.4
THA.LOC104810765 Tarenaya hassleriana HOM05D000959 ORTHO05D000775 2.4e-12 75.1 53 69.8
Atru.chr3.3977 Acer truncatum HOM05D000959 ORTHO05D000775 7.6e-11 70.1 49 67.3
Gohir.A03G044000 Gossypium hirsutum HOM05D000959 ORTHO05D000775 7.6e-11 70.1 48 64.6
Gohir.D03G123500 Gossypium hirsutum HOM05D000959 ORTHO05D000775 2.9e-10 68.2 48 64.6
Gorai.003G130100 Gossypium raimondii HOM05D000959 ORTHO05D000775 2.9e-10 68.2 48 64.6
Rhsim01G0230500 Rhododendron simsii HOM05D000959 ORTHO05D000775 2.9e-10 68.2 48 68.8
Haze_24128 Corylus avellana HOM05D000959 ORTHO05D000775 8.4e-10 66.6 61 52.5
Sabra16G0147100 Salix brachista HOM05D000959 ORTHO05D000775 1.4e-09 65.9 48 64.6
Aqoxy1G00912 Aquilegia oxysepala HOM05D000959 ORTHO05D000775 1.9e-09 65.5 48 60.4
Duzib170G0133 Durio zibethinus HOM05D000959 ORTHO05D000775 1.9e-09 65.5 48 64.6
Hma1.2p1_0757F.1_g213260 Hydrangea macrophylla HOM05D000959 ORTHO05D000775 1.9e-09 65.5 48 64.6
Hma1.2p1_1861F.1_g305685 Hydrangea macrophylla HOM05D000959 ORTHO05D000775 1.9e-09 65.5 48 64.6
Nn2g13389 Nelumbo nucifera HOM05D000959 ORTHO05D000775 2.4e-09 65.1 48 62.5
Cfa011522 Carpinus fangiana HOM05D000959 ORTHO05D000775 3.2e-09 64.7 48 64.6
Ciclev10028968m.g Citrus clementina HOM05D000959 ORTHO05D000775 3.2e-09 64.7 48 62.5
COL.COLO4_18546 Corchorus olitorius HOM05D000959 ORTHO05D000775 3.2e-09 64.7 48 62.5
Thecc.09G318700 Theobroma cacao HOM05D000959 ORTHO05D000775 3.2e-09 64.7 56 58.9
Cpa.g.sc81.119 Carica papaya HOM05D000959 ORTHO05D000775 4.2e-09 64.3 48 64.6
Potri.001G242300 Populus trichocarpa HOM05D000959 ORTHO05D000775 4.2e-09 64.3 48 62.5
Duzib168G1523 Durio zibethinus HOM05D000959 ORTHO05D000775 7.1e-09 63.5 48 64.6
Dinv42977 Davidia involucrata HOM05D000959 ORTHO05D000775 9.3e-09 63.2 48 64.6
Duzib150G1084 Durio zibethinus HOM05D000959 ORTHO05D000775 9.3e-09 63.2 48 64.6
TAR633G1195 Trochodendron aralioides HOM05D000959 ORTHO05D000775 9.3e-09 63.2 48 60.4
Cfa011523 Carpinus fangiana HOM05D000959 ORTHO05D000775 1.2e-08 62.8 48 58.3
Duzib168G0488 Durio zibethinus HOM05D000959 ORTHO05D000775 2.1e-08 62.0 48 62.5
Cpa.g.sc81.118 Carica papaya HOM05D000959 ORTHO05D000775 2.7e-08 61.6 48 58.3
DCAR_015632 Daucus carota HOM05D000959 ORTHO05D000775 2.7e-08 61.6 49 59.2
Lj2A93T83 Lonicera japonica HOM05D000959 ORTHO05D000775 2.7e-08 61.6 48 60.4
Manes.01G171400 Manihot esculenta HOM05D000959 ORTHO05D000775 2.7e-08 61.6 48 60.4
ECA236G4830 Erigeron canadensis HOM05D000959 ORTHO05D000775 3.5e-08 61.2 48 60.4
vmacro14547 Vaccinium macrocarpon HOM05D000959 ORTHO05D000775 3.5e-08 61.2 48 62.5
Sed0002422 Sechium edule HOM05D000959 ORTHO05D000775 4.6e-08 60.8 48 62.5
Eucgr.B02326 Eucalyptus grandis HOM05D000959 ORTHO05D000775 6.0e-08 60.5 48 58.3
HanXRQChr05g0135031 Helianthus annuus HOM05D000959 ORTHO05D000775 7.9e-08 60.1 50 62.0
Ca_01315_v3 Cicer arietinum L. HOM05D000959 ORTHO05D000775 1.0e-07 59.7 48 58.3
COL.COLO4_18547 Corchorus olitorius HOM05D000959 ORTHO05D000775 1.0e-07 59.7 49 57.1
ECA236G2256 Erigeron canadensis HOM05D000959 ORTHO05D000775 1.0e-07 59.7 83 45.8
TAR636G2660 Trochodendron aralioides HOM05D000959 ORTHO05D000775 1.3e-07 59.3 48 64.6
Dinv37161 Davidia involucrata HOM05D000959 ORTHO05D000775 1.8e-07 58.9 48 60.4
Thecc.09G318600 Theobroma cacao HOM05D000959 ORTHO05D000775 1.8e-07 58.9 48 56.2
ClCG03G001370 Citrullus lanatus HOM05D000959 ORTHO05D000775 2.3e-07 58.5 48 58.3
COL.COLO4_30419 Corchorus olitorius HOM05D000959 ORTHO05D000775 2.3e-07 58.5 50 56.0
ECA236G2365 Erigeron canadensis HOM05D000959 ORTHO05D000775 2.3e-07 58.5 48 58.3
MD03G1088600 Malus domestica HOM05D000959 ORTHO05D000775 2.3e-07 58.5 49 51.0
PSO339G4127 Papaver somniferum HOM05D000959 ORTHO05D000775 2.3e-07 58.5 48 56.2
PSO513G0064 Papaver somniferum HOM05D000959 ORTHO05D000775 2.3e-07 58.5 48 56.2
QL01p031078 Quercus lobata HOM05D000959 ORTHO05D000775 2.3e-07 58.5 48 62.5
Sed0001706 Sechium edule HOM05D000959 ORTHO05D000775 2.3e-07 58.5 48 58.3
GSVIVG01024928001 Vitis vinifera HOM05D000959 ORTHO05D000775 2.3e-07 58.5 48 56.2
CDE02G1265 Ceratophyllum demersum HOM05D000959 ORTHO05D000775 3.0e-07 58.2 48 54.2
CDE08G1082 Ceratophyllum demersum HOM05D000959 ORTHO05D000775 3.0e-07 58.2 48 54.2
Ciclev10029907m.g Citrus clementina HOM05D000959 ORTHO05D000775 3.0e-07 58.2 48 58.3
Dinv06261 Davidia involucrata HOM05D000959 ORTHO05D000775 3.0e-07 58.2 50 58.0
Thhalv10014335m.g Eutrema salsugineum HOM05D000959 ORTHO05D000775 3.0e-07 58.2 48 58.3
Oeu004163.1 Olea europaea HOM05D000959 ORTHO05D000775 3.0e-07 58.2 48 58.3
Phvul.L007043 Phaseolus vulgaris HOM05D000959 ORTHO05D000775 3.0e-07 58.2 48 58.3
THA.LOC104816266 Tarenaya hassleriana HOM05D000959 ORTHO05D000775 3.0e-07 58.2 48 60.4
MBI14_g12123_MAGBIO Magnolia biondii HOM05D000959 ORTHO05D000775 3.9e-07 57.8 48 56.2
TPR.G40397 Trifolium pratense HOM05D000959 ORTHO05D000775 3.9e-07 57.8 48 58.3
HanXRQChr06g0178981 Helianthus annuus HOM05D000959 ORTHO05D000775 5.1e-07 57.4 83 42.2
Sp6g40220 Schrenkiella parvula HOM05D000959 ORTHO05D000775 5.1e-07 57.4 48 56.2
Solyc06g076300.3 Solanum lycopersicum HOM05D000959 ORTHO05D000775 5.1e-07 57.4 51 56.9
Sopen06g032720 Solanum pennellii HOM05D000959 ORTHO05D000775 5.1e-07 57.4 51 56.9
PGSC0003DMG400030418 Solanum tuberosum HOM05D000959 ORTHO05D000775 5.1e-07 57.4 51 56.9
BraA02t04712Z Brassica rapa HOM05D000959 ORTHO05D000775 6.7e-07 57.0 48 56.2
CANSAT35G0735 Cannabis sativa HOM05D000959 ORTHO05D000775 6.7e-07 57.0 48 58.3
CsaV3_1G034440 Cucumis sativus L. HOM05D000959 ORTHO05D000775 6.7e-07 57.0 50 54.0
CsaV3_1G034450 Cucumis sativus L. HOM05D000959 ORTHO05D000775 6.7e-07 57.0 50 54.0
FAN02G3963 Fragaria x ananassa HOM05D000959 ORTHO05D000775 6.7e-07 57.0 48 56.2
FAN05G0438 Fragaria x ananassa HOM05D000959 ORTHO05D000775 6.7e-07 57.0 48 56.2
FAN09G2434 Fragaria x ananassa HOM05D000959 ORTHO05D000775 6.7e-07 57.0 48 56.2
FAN14G1238 Fragaria x ananassa HOM05D000181 ORTHO05D003134 6.7e-07 57.0 48 56.2
Lalb_Chr19g0137891 Lupinus albus HOM05D000959 ORTHO05D000775 6.7e-07 57.0 51 62.7
MD11G1097600 Malus domestica HOM05D000959 ORTHO05D000775 6.7e-07 57.0 49 46.9
PGR031G2716 Punica granatum HOM05D000959 ORTHO05D000775 6.7e-07 57.0 48 50.0
Rhsim05G0194000 Rhododendron simsii HOM05D000959 ORTHO05D000775 6.7e-07 57.0 48 60.4
RcHm_v2.0_Chr3g0466361 Rosa chinensis HOM05D000959 ORTHO05D000775 6.7e-07 57.0 48 56.2
THA.LOC104827021 Tarenaya hassleriana HOM05D000959 ORTHO05D000775 6.7e-07 57.0 47 61.7
Atru.chr8.1991 Acer truncatum HOM05D000959 ORTHO05D000775 8.7e-07 56.6 48 52.1
Carub.0006s0107 Capsella rubella HOM05D000959 ORTHO05D000775 8.7e-07 56.6 48 54.2
MELO3C020616.2 Cucumis melo HOM05D000959 ORTHO05D000775 8.7e-07 56.6 48 56.2
MELO3C020617.2 Cucumis melo HOM05D000959 ORTHO05D000775 8.7e-07 56.6 48 56.2
Gorai.003G130000 Gossypium raimondii HOM05D000959 ORTHO05D000775 8.7e-07 56.6 48 58.3
Lj1C148G10 Lonicera japonica HOM05D000959 ORTHO05D000775 8.7e-07 56.6 48 56.2
Lj3C966T1 Lonicera japonica HOM05D000959 ORTHO05D000775 8.7e-07 56.6 86 37.2
MD04G1130800 Malus domestica HOM05D000959 ORTHO05D000775 8.7e-07 56.6 48 54.2
THA.LOC104806559 Tarenaya hassleriana HOM05D000959 ORTHO05D000775 8.7e-07 56.6 48 58.3
CANSAT54G0556 Cannabis sativa HOM05D000959 ORTHO05D000775 1.1e-06 56.2 48 54.2
FvH4_6g13490 Fragaria vesca HOM05D000959 ORTHO05D000775 1.1e-06 56.2 48 56.2
FAN14G0798 Fragaria x ananassa HOM05D000959 ORTHO05D000775 1.1e-06 56.2 48 56.2
Gohir.D03G123400 Gossypium hirsutum HOM05D000959 ORTHO05D000775 1.1e-06 56.2 48 58.3
Medtr2g097520 Medicago truncatula HOM05D000959 ORTHO05D000775 1.1e-06 56.2 48 56.2
C02p00400 Brassica napus HOM05D000959 ORTHO05D000775 1.5e-06 55.8 48 54.2
BolC2t06040H Brassica oleracea HOM05D000959 ORTHO05D000775 1.5e-06 55.8 48 54.2
DCAR_005960 Daucus carota HOM05D000959 ORTHO05D000775 1.5e-06 55.8 48 56.2
GSVIVG01034151001 Vitis vinifera HOM05D000959 ORTHO05D000775 1.5e-06 55.8 48 56.2
Actinidia34420 Actinidia chinensis HOM05D000959 ORTHO05D000775 1.9e-06 55.5 48 52.1
Cc01_g13130 Coffea canephora HOM05D000959 ORTHO05D000775 1.9e-06 55.5 48 56.2
Lsat_1_v5_gn_8_73460 Lactuca sativa HOM05D000959 ORTHO05D000775 1.9e-06 55.5 48 58.3
Lsat_1_v5_gn_8_73481 Lactuca sativa HOM05D000959 ORTHO05D000775 1.9e-06 55.5 48 62.5
Prupe.6G257300 Prunus persica HOM05D000959 ORTHO05D000775 1.9e-06 55.5 48 54.2
Aqoxy2G02253 Aquilegia oxysepala HOM05D000959 ORTHO05D000775 2.5e-06 55.1 48 52.1
AT5G02230 Arabidopsis thaliana HOM05D000959 ORTHO05D000775 2.5e-06 55.1 48 54.2
BcaC03g18439 Brassica carinata HOM05D000959 ORTHO05D000775 2.5e-06 55.1 48 54.2
DCAR_012105 Daucus carota HOM05D000959 ORTHO05D000775 2.5e-06 55.1 47 53.2
Glyma.11G137800 Glycine max HOM05D000959 ORTHO05D000775 2.5e-06 55.1 51 58.8
Gohir.D08G011600 Gossypium hirsutum HOM05D000959 ORTHO05D000775 2.5e-06 55.1 48 52.1
Gorai.004G005300 Gossypium raimondii HOM05D000959 ORTHO05D000775 2.5e-06 55.1 48 52.1
Nitab4.5_0000463g0080 Nicotiana tabacum HOM05D000959 ORTHO05D000775 2.5e-06 55.1 47 53.2
Nitab4.5_0001326g0060 Nicotiana tabacum HOM05D000959 ORTHO05D000775 2.5e-06 55.1 47 53.2
arahy.Tifrunner.gnm1.ann1.FQ6BF2 Arachis hypogaea HOM05D000959 ORTHO05D000775 3.3e-06 54.7 48 56.2
Lj3g0021831 Lotus japonicus HOM05D000959 ORTHO05D000775 3.3e-06 54.7 48 66.7
MD12G1143900 Malus domestica HOM05D000959 ORTHO05D000775 3.3e-06 54.7 48 52.1
Psat7g215400 Pisum sativum HOM05D000959 ORTHO05D000775 3.3e-06 54.7 48 64.6
Prupe.6G072800 Prunus persica HOM05D000959 ORTHO05D000775 3.3e-06 54.7 47 48.9
Sabra06G0066300 Salix brachista HOM05D000959 ORTHO05D000775 3.3e-06 54.7 48 56.2
TPR.G23609 Trifolium pratense HOM05D000959 ORTHO05D000775 3.3e-06 54.7 48 64.6
Zm00001eb012270 Zea mays HOM05D000959 ORTHO05D000775 3.3e-06 54.7 48 54.2
Atru.chr3.3975 Acer truncatum HOM05D000959 ORTHO05D000775 4.3e-06 54.3 48 52.1
Aa31LG1G22510 Aethionema arabicum HOM05D000959 ORTHO05D000775 4.3e-06 54.3 48 54.2
A10p33390 Brassica napus HOM05D000959 ORTHO05D000775 4.3e-06 54.3 48 54.2
BraA10t45370Z Brassica rapa HOM05D000959 ORTHO05D000775 4.3e-06 54.3 48 54.2
CSS0042533 Camellia sinensis var. sinensis HOM05D000959 ORTHO05D000775 4.3e-06 54.3 48 58.3
CAN.G394.68 Capsicum annuum HOM05D000959 ORTHO05D000775 4.3e-06 54.3 47 55.3
Lj3g0018958 Lotus japonicus HOM05D000959 ORTHO05D000775 4.3e-06 54.3 49 53.1
QL01p031003 Quercus lobata HOM05D000959 ORTHO05D000775 4.3e-06 54.3 48 52.1
Sp4g20030 Schrenkiella parvula HOM05D000959 ORTHO05D000775 4.3e-06 54.3 48 52.1
Sc20g0005010 Simmondsia chinensis HOM05D000959 ORTHO05D000775 4.3e-06 54.3 48 58.3
TWI79G1254 Tripterygium wilfordii HOM05D000959 ORTHO05D000775 4.3e-06 54.3 48 56.2
HPP92_015539 Vanilla planifolia HOM05D000959 ORTHO05D000775 4.3e-06 54.3 47 53.2
arahy.Tifrunner.gnm1.ann1.V61LZZ Arachis hypogaea HOM05D000959 ORTHO05D000775 5.6e-06 53.9 48 52.1
arahy.Tifrunner.gnm1.ann1.YWP64R Arachis hypogaea HOM05D000959 ORTHO05D000775 5.6e-06 53.9 48 52.1
COL.COLO4_14780 Corchorus olitorius HOM05D000959 ORTHO05D000775 5.6e-06 53.9 48 52.1
Thhalv10017180m.g Eutrema salsugineum HOM05D000959 ORTHO05D000775 5.6e-06 53.9 48 50.0
Lj3g0025443 Lotus japonicus HOM05D000959 ORTHO05D000775 5.6e-06 53.9 48 52.1
Medtr4g064380 Medicago truncatula HOM05D000959 ORTHO05D000775 5.6e-06 53.9 48 68.8
Atru.chr8.1992 Acer truncatum HOM05D000959 ORTHO05D000775 7.4e-06 53.5 48 54.2
AL6G11470 Arabidopsis lyrata HOM05D000959 ORTHO05D000775 7.4e-06 53.5 48 52.1
CSS0017840 Camellia sinensis var. sinensis HOM05D000959 ORTHO05D000775 7.4e-06 53.5 51 56.9
CSS0019260 Camellia sinensis var. sinensis HOM05D000959 ORTHO05D000775 7.4e-06 53.5 51 56.9
Duzib093G0256 Durio zibethinus HOM05D000959 ORTHO05D000775 7.4e-06 53.5 48 52.1
Eucgr.A01281 Eucalyptus grandis HOM05D000959 ORTHO05D000775 7.4e-06 53.5 48 52.1
Gohir.A08G000700 Gossypium hirsutum HOM05D000959 ORTHO05D000775 7.4e-06 53.5 48 50.0
Lalb_Chr01g0022551 Lupinus albus HOM05D000959 ORTHO05D000775 7.4e-06 53.5 48 52.1
Os01g0973000 Oryza sativa ssp. japonica HOM05D000959 ORTHO05D000775 7.4e-06 53.5 48 54.2
Prupe.6G072700 Prunus persica HOM05D000959 ORTHO05D000775 7.4e-06 53.5 48 54.2
RcHm_v2.0_Chr5g0065831 Rosa chinensis HOM05D000959 ORTHO05D000775 7.4e-06 53.5 48 54.2
arahy.Tifrunner.gnm1.ann1.L0YNNV Arachis hypogaea HOM05D000959 ORTHO05D000775 9.6e-06 53.1 48 54.2
arahy.Tifrunner.gnm1.ann1.PP2Z6E Arachis hypogaea HOM05D000959 ORTHO05D000775 9.6e-06 53.1 48 52.1
BcaB02g09263 Brassica carinata HOM05D000959 ORTHO05D000775 9.6e-06 53.1 48 50.0
C09p74300 Brassica napus HOM05D000959 ORTHO05D000775 9.6e-06 53.1 48 52.1
Cfa017359 Carpinus fangiana HOM05D000959 ORTHO05D000775 9.6e-06 53.1 48 52.1
AUR62025820 Chenopodium quinoa HOM05D000959 ORTHO05D000775 9.6e-06 53.1 48 58.3
Haze_20814 Corylus avellana HOM05D000959 ORTHO05D000775 9.6e-06 53.1 48 52.1
Dinv35585 Davidia involucrata HOM05D000959 ORTHO05D000775 9.6e-06 53.1 48 54.2
Glyma.13G337900 Glycine max HOM05D000959 ORTHO05D000775 9.6e-06 53.1 48 52.1
Gohir.A03G044100 Gossypium hirsutum HOM05D000959 ORTHO05D000775 9.6e-06 53.1 48 56.2
Peaxi162Scf00774g00218 Petunia axillaris HOM05D000959 ORTHO05D000775 9.6e-06 53.1 47 53.2
SGA_v2.0_scaffold2G01337 Striga asiatica HOM05D000959 ORTHO05D000775 9.6e-06 53.1 50 52.0


User provided reference genes

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