Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48385 Brassica carinata HOM05D000097 ORTHO05D000041 8.5e-81 303.5 143 100.0
AL7G34090 Arabidopsis lyrata HOM05D000097 ORTHO05D000041 1.1e-11 73.9 109 33.0
QL11p015794 Quercus lobata HOM05D000097 ORTHO05D000041 5.4e-11 71.6 109 31.2
BraA09t37742Z Brassica rapa HOM05D000097 ORTHO05D000041 7.1e-11 71.2 124 31.5
QL11p015595 Quercus lobata HOM05D000097 ORTHO05D000041 1.6e-10 70.1 119 30.3
Atru.chr10.64 Acer truncatum HOM05D000097 ORTHO05D000041 2.1e-10 69.7 105 33.3
CARHR177980 Cardamine hirsuta HOM05D000097 ORTHO05D000041 2.1e-10 69.7 98 34.7
QL11p015433 Quercus lobata HOM05D000097 ORTHO05D000041 2.1e-10 69.7 119 30.3
MELO3C005362.2 Cucumis melo HOM05D000097 ORTHO05D000041 2.7e-10 69.3 121 33.1
A09p21410 Brassica napus HOM05D000097 ORTHO05D000041 3.5e-10 68.9 124 30.6
BcaC04g21811 Brassica carinata HOM05D000097 ORTHO05D000041 4.6e-10 68.6 124 29.0
C09p27240 Brassica napus HOM05D000097 ORTHO05D000041 4.6e-10 68.6 124 29.0
Carub.0007s2129 Capsella rubella HOM05D000097 ORTHO05D000041 1.0e-09 67.4 100 35.0
Sed0006065 Sechium edule HOM05D000097 ORTHO05D000041 1.0e-09 67.4 99 36.4
Cfa001123 Carpinus fangiana HOM05D000097 ORTHO05D000041 1.3e-09 67.0 128 30.5
Ciclev10014428m.g Citrus clementina HOM05D000097 ORTHO05D000041 1.3e-09 67.0 111 30.6
CsaV3_5G005950 Cucumis sativus L. HOM05D000097 ORTHO05D000041 1.3e-09 67.0 121 32.2
CiPaw.10G105200 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.7e-09 66.6 120 30.8
AUR62012645 Chenopodium quinoa HOM05D000097 ORTHO05D000041 1.7e-09 66.6 109 33.9
CiPaw.10G104900 Carya illinoinensis HOM05D000097 ORTHO05D000041 2.3e-09 66.2 120 30.8
ClCG03G004430 Citrullus lanatus HOM05D000097 ORTHO05D000041 2.3e-09 66.2 99 34.3
Atru.chr10.829 Acer truncatum HOM05D000097 ORTHO05D000041 3.0e-09 65.9 111 31.5
QL11p015610 Quercus lobata HOM05D000097 ORTHO05D000041 3.0e-09 65.9 112 28.6
Sed0007525 Sechium edule HOM05D000097 ORTHO05D000041 5.1e-09 65.1 99 31.3
Sed0012873 Sechium edule HOM05D000097 ORTHO05D000041 8.6e-09 64.3 104 29.8
QL11p015452 Quercus lobata HOM05D000097 ORTHO05D000041 1.1e-08 63.9 112 27.7
FvH4_1g20460 Fragaria vesca HOM05D000097 ORTHO05D000041 1.5e-08 63.5 113 31.9
FAN28G0875 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.5e-08 63.5 113 31.9
AL176U10010 Arabidopsis lyrata HOM05D000097 ORTHO05D000041 1.9e-08 63.2 98 31.6
AL7G41730 Arabidopsis lyrata HOM05D000097 ORTHO05D000041 1.9e-08 63.2 98 31.6
FAN19G2679 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.9e-08 63.2 113 31.0
Sed0015043 Sechium edule HOM05D000097 ORTHO05D000041 1.9e-08 63.2 103 33.0
CANSAT35G1187 Cannabis sativa HOM05D000097 ORTHO05D000041 2.5e-08 62.8 106 31.1
Dinv15491 Davidia involucrata HOM05D000097 ORTHO05D000041 2.5e-08 62.8 106 32.1
QL11p014782 Quercus lobata HOM05D000097 ORTHO05D000041 2.5e-08 62.8 119 33.6
Atru.chr10.77 Acer truncatum HOM05D000097 ORTHO05D000041 3.3e-08 62.4 75 37.3
Haze_06090 Corylus avellana HOM05D000097 ORTHO05D000041 4.3e-08 62.0 123 28.5
Sc13g0010370 Simmondsia chinensis HOM05D000097 ORTHO05D000041 4.3e-08 62.0 62 43.5
CsaV3_1G010510 Cucumis sativus L. HOM05D000097 ORTHO05D000041 7.3e-08 61.2 111 29.7
FAN23G0150 Fragaria x ananassa HOM05D000097 ORTHO05D000041 7.3e-08 61.2 113 31.0
Prupe.1G545900 Prunus persica HOM05D000097 ORTHO05D000041 7.3e-08 61.2 113 28.3
Thecc.02G008200 Theobroma cacao HOM05D000097 ORTHO05D000041 7.3e-08 61.2 108 30.6
A03p52140 Brassica napus HOM05D000097 ORTHO05D000041 9.5e-08 60.8 95 33.7
RcHm_v2.0_Chr2g0112741 Rosa chinensis HOM05D000097 ORTHO05D000041 9.5e-08 60.8 113 31.0
CiPaw.10G104000 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.2e-07 60.5 115 32.2
Sed0012454 Sechium edule HOM05D000097 ORTHO05D000041 1.2e-07 60.5 118 28.0
Sc13g0010440 Simmondsia chinensis HOM05D000097 ORTHO05D000041 1.2e-07 60.5 62 41.9
Thecc.02G008300 Theobroma cacao HOM05D000097 ORTHO05D000041 1.2e-07 60.5 109 31.2
MELO3C002434.2 Cucumis melo HOM05D000097 ORTHO05D000041 1.6e-07 60.1 98 29.6
Sed0016896 Sechium edule HOM05D000097 ORTHO05D000041 1.6e-07 60.1 102 30.4
Hma1.2p1_0683F.1_g202970 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 2.1e-07 59.7 108 33.3
Cfa000928 Carpinus fangiana HOM05D000097 ORTHO05D000041 2.8e-07 59.3 115 29.6
AUR62022009 Chenopodium quinoa HOM05D000097 ORTHO05D000041 2.8e-07 59.3 109 33.0
Cc09_g05960 Coffea canephora HOM05D000097 ORTHO05D000041 2.8e-07 59.3 90 35.6
Haze_06081 Corylus avellana HOM05D000097 ORTHO05D000041 2.8e-07 59.3 109 28.4
Dinv01231 Davidia involucrata HOM05D000097 ORTHO05D000041 2.8e-07 59.3 109 29.4
Hma1.2p1_0552F.1_g177730 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 2.8e-07 59.3 111 27.0
Sabra06G0045400 Salix brachista HOM05D000002 ORTHO05D000001 2.8e-07 59.3 73 38.4
Ah.14g088140 Amaranthus hybridus HOM05D000097 ORTHO05D000041 3.6e-07 58.9 56 41.1
CARHR158190 Cardamine hirsuta HOM05D000097 ORTHO05D000041 3.6e-07 58.9 63 34.9
CiPaw.09G137300 Carya illinoinensis HOM05D000097 ORTHO05D000041 3.6e-07 58.9 148 29.7
Ciclev10027269m.g Citrus clementina HOM05D000097 ORTHO05D000041 3.6e-07 58.9 94 33.0
CsaV3_1G010260 Cucumis sativus L. HOM05D000097 ORTHO05D000041 3.6e-07 58.9 116 27.6
Oeu000685.1 Olea europaea HOM05D000097 ORTHO05D000041 3.6e-07 58.9 106 32.1
QL11p016052 Quercus lobata HOM05D000097 ORTHO05D000041 3.6e-07 58.9 56 42.9
AUR62038062 Chenopodium quinoa HOM05D000097 ORTHO05D000041 4.7e-07 58.5 111 29.7
Dinv15490 Davidia involucrata HOM05D000097 ORTHO05D000041 4.7e-07 58.5 126 27.8
Manes.14G165900 Manihot esculenta HOM05D000097 ORTHO05D000041 4.7e-07 58.5 109 33.9
Sabra06G0107800 Salix brachista HOM05D000097 ORTHO05D000041 4.7e-07 58.5 59 44.1
Sabra18G0103500 Salix brachista HOM05D000097 ORTHO05D000041 4.7e-07 58.5 73 37.0
Sabra18G0104000 Salix brachista HOM05D000097 ORTHO05D000041 4.7e-07 58.5 73 37.0
Sc13g0010340 Simmondsia chinensis HOM05D000097 ORTHO05D000041 4.7e-07 58.5 56 44.6
Ciclev10014877m.g Citrus clementina HOM05D000097 ORTHO05D000041 6.2e-07 58.2 65 35.4
Manes.14G165800 Manihot esculenta HOM05D000097 ORTHO05D000041 6.2e-07 58.2 108 33.3
Sabra06G0045200 Salix brachista HOM05D000097 ORTHO05D000041 6.2e-07 58.2 62 43.5
Sc13g0010410 Simmondsia chinensis HOM05D000097 ORTHO05D000041 6.2e-07 58.2 62 40.3
AUR62022007 Chenopodium quinoa HOM05D000097 ORTHO05D000041 8.1e-07 57.8 113 30.1
FAN11G2818 Fragaria x ananassa HOM05D000097 ORTHO05D000041 8.1e-07 57.8 103 29.1
TWI15G0584 Tripterygium wilfordii HOM05D000097 ORTHO05D000041 8.1e-07 57.8 125 29.6
AUR62012648 Chenopodium quinoa HOM05D000097 ORTHO05D000041 1.4e-06 57.0 108 32.4
Ciclev10003287m.g Citrus clementina HOM05D000097 ORTHO05D000041 1.4e-06 57.0 94 30.9
MELO3C002429.2 Cucumis melo HOM05D000097 ORTHO05D000041 1.4e-06 57.0 94 29.8
VMungo0720G2463 Vigna mungo HOM05D000097 ORTHO05D000041 1.4e-06 57.0 56 42.9
Cfa000845 Carpinus fangiana HOM05D000097 ORTHO05D000041 1.8e-06 56.6 97 33.0
ClCG03G004330 Citrullus lanatus HOM05D000286 ORTHO05D000170 1.8e-06 56.6 114 25.4
Cc09_g05690 Coffea canephora HOM05D000097 ORTHO05D000041 1.8e-06 56.6 71 38.0
CsaV3_1G010470 Cucumis sativus L. HOM05D000097 ORTHO05D000041 1.8e-06 56.6 98 27.6
Hma1.2p1_0498F.1_g166590 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 1.8e-06 56.6 111 26.1
Prupe.6G131800 Prunus persica HOM05D000097 ORTHO05D000041 1.8e-06 56.6 114 25.4
Sed0005300 Sechium edule HOM05D000097 ORTHO05D000041 1.8e-06 56.6 118 27.1
CANSAT35G1022 Cannabis sativa HOM05D000097 ORTHO05D000041 2.4e-06 56.2 109 29.4
ClCG03G004390 Citrullus lanatus HOM05D000097 ORTHO05D000041 2.4e-06 56.2 99 28.3
CsaV3_1G010380 Cucumis sativus L. HOM05D000097 ORTHO05D000041 2.4e-06 56.2 106 25.5
MD05G1166100 Malus domestica HOM05D000097 ORTHO05D000041 2.4e-06 56.2 113 30.1
QL11p015493 Quercus lobata HOM05D000097 ORTHO05D000041 2.4e-06 56.2 135 25.2
QL11p015650 Quercus lobata HOM05D000097 ORTHO05D000041 2.4e-06 56.2 135 25.2
Ah.09g235310 Amaranthus hybridus HOM05D000097 ORTHO05D000041 3.1e-06 55.8 56 42.9
CiPaw.16G023400 Carya illinoinensis HOM05D000097 ORTHO05D000041 3.1e-06 55.8 101 33.7
Ciclev10003268m.g Citrus clementina HOM05D000097 ORTHO05D000041 3.1e-06 55.8 94 27.7
Hma1.2p1_0498F.1_g166540 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 3.1e-06 55.8 111 26.1
Prupe.2G015900 Prunus persica HOM05D000097 ORTHO05D000041 3.1e-06 55.8 104 26.9
AT5G35810 Arabidopsis thaliana HOM05D000097 ORTHO05D000041 4.0e-06 55.5 55 43.6
EL10Ac8g19891 Beta vulgaris HOM05D000097 ORTHO05D000041 4.0e-06 55.5 56 42.9
CiPaw.16G023600 Carya illinoinensis HOM05D000097 ORTHO05D000041 4.0e-06 55.5 99 29.3
CsaV3_5G005920 Cucumis sativus L. HOM05D000097 ORTHO05D000041 4.0e-06 55.5 105 29.5
FvH4_3g25081 Fragaria vesca HOM05D000097 ORTHO05D000041 4.0e-06 55.5 109 27.5
arahy.Tifrunner.gnm1.ann1.UW7XP9 Arachis hypogaea HOM05D000097 ORTHO05D000041 5.2e-06 55.1 58 43.1
ClCG03G003230 Citrullus lanatus HOM05D000097 ORTHO05D000041 5.2e-06 55.1 100 27.0
ClCG03G004290 Citrullus lanatus HOM05D000097 ORTHO05D000041 5.2e-06 55.1 106 29.2
Sed0004731 Sechium edule HOM05D000097 ORTHO05D000041 5.2e-06 55.1 99 27.3
Ciclev10017457m.g Citrus clementina HOM05D000097 ORTHO05D000041 6.8e-06 54.7 78 34.6
CsaV3_1G010340 Cucumis sativus L. HOM05D000097 ORTHO05D000041 6.8e-06 54.7 102 26.5
RcHm_v2.0_Chr5g0045311 Rosa chinensis HOM05D000097 ORTHO05D000041 6.8e-06 54.7 99 23.2
Dinv03651 Davidia involucrata HOM05D000097 ORTHO05D000041 8.9e-06 54.3 70 31.4
FvH4_3g25080 Fragaria vesca HOM05D000097 ORTHO05D000041 8.9e-06 54.3 106 27.4
Prupe.6G131400 Prunus persica HOM05D000097 ORTHO05D000041 8.9e-06 54.3 112 24.1
Prupe.6G131600 Prunus persica HOM05D000097 ORTHO05D000041 8.9e-06 54.3 113 23.9


User provided reference genes

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