Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48303 Brassica carinata HOM05D003079 ORTHO05D003461 2.7e-217 758.4 404 100.0
BolC1t05117H Brassica oleracea HOM05D003079 ORTHO05D003461 1.3e-211 739.6 394 99.5
C01p51720 Brassica napus HOM05D003079 ORTHO05D003461 6.3e-206 720.7 394 97.0
BraA01t04061Z Brassica rapa HOM05D003079 ORTHO05D003461 1.4e-157 560.1 424 77.4
A01p40240 Brassica napus HOM05D003079 ORTHO05D003461 7.0e-157 557.8 424 77.1
BcaB04g21010 Brassica carinata HOM05D003079 ORTHO05D003461 6.4e-150 534.6 414 75.8
Sp3g11560 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.1e-141 507.3 474 67.5
BcaC01g03997 Brassica carinata HOM05D003079 ORTHO05D003461 1.2e-127 460.7 427 66.7
C03p46320 Brassica napus HOM05D003079 ORTHO05D003461 4.9e-126 455.3 428 66.1
BolC3t16901H Brassica oleracea HOM05D003079 ORTHO05D003461 4.2e-125 452.2 427 66.0
A03p38160 Brassica napus HOM05D003079 ORTHO05D003461 5.4e-125 451.8 426 66.7
BraA03t12969Z Brassica rapa HOM05D003079 ORTHO05D003461 5.4e-125 451.8 426 66.7
Thhalv10020643m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 9.3e-125 451.1 460 63.3
BcaB04g18754 Brassica carinata HOM05D003079 ORTHO05D003461 1.3e-123 447.2 422 65.9
AL3G25210 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 5.8e-119 431.8 438 64.6
CARHR087980 Cardamine hirsuta HOM05D003079 ORTHO05D003461 8.7e-115 417.9 422 63.3
AT3G13360 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 2.8e-105 386.3 438 59.1
Carub.0003s1274 Capsella rubella HOM05D003079 ORTHO05D003461 6.9e-104 381.7 443 58.2
Aa31LG8G580 Aethionema arabicum HOM05D003079 ORTHO05D003461 4.2e-93 345.9 434 55.1
THA.LOC104815679 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.7e-62 244.2 424 45.0
THA.LOC104810573 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 3.3e-45 186.8 418 39.7
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 1.6e-31 141.4 461 31.9
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 1.1e-29 135.2 440 32.0
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 1.5e-29 134.8 457 30.9
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 3.6e-28 130.2 550 30.5
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 4.0e-27 126.7 563 31.1
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 6.8e-27 125.9 437 29.7
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 1.2e-26 125.2 531 29.9
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 2.9e-25 120.6 458 30.1
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 3.7e-25 120.2 569 29.0
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 1.1e-24 118.6 532 31.0
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 2.4e-24 117.5 532 27.3
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 2.4e-24 117.5 511 29.7
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 3.2e-24 117.1 541 28.7
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 7.1e-24 115.9 545 28.8
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 1.2e-23 115.2 328 33.2
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 3.5e-23 113.6 541 28.3
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 1.0e-22 112.1 557 27.8
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 1.3e-22 111.7 328 33.5
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.3e-22 111.7 541 28.3
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 1.3e-22 111.7 537 27.9
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 3.3e-21 107.1 544 28.7
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 4.3e-21 106.7 464 29.1
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 7.3e-21 105.9 403 30.8
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 9.5e-21 105.5 520 27.3
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 1.6e-20 104.8 443 29.1
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 1.6e-20 104.8 546 26.9
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 2.1e-20 104.4 430 28.8
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 6.2e-20 102.8 532 28.0
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 6.2e-20 102.8 523 28.7
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 8.1e-20 102.4 533 26.6
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.1e-19 102.1 464 28.9
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 1.1e-19 102.1 520 28.3
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.1e-19 102.1 482 28.2
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 1.4e-19 101.7 495 27.7
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 2.4e-19 100.9 451 30.2
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 2.0e-18 97.8 327 31.2
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 4.4e-18 96.7 332 30.7
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 5.8e-18 96.3 546 27.7
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 1.3e-17 95.1 558 27.1
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 1.7e-17 94.7 417 30.0
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 4.9e-17 93.2 529 26.3
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 6.4e-17 92.8 565 25.7
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 8.4e-17 92.4 543 25.2
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.1e-16 92.0 536 27.8
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.4e-16 91.7 432 28.5
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 1.4e-16 91.7 546 27.8
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 1.4e-16 91.7 557 27.8
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 1.9e-16 91.3 479 27.3
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 1.9e-16 91.3 543 25.0
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.9e-16 91.3 555 25.8
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 2.4e-16 90.9 432 28.5
C03p63130 Brassica napus HOM05D003079 ORTHO05D003461 5.4e-16 89.7 81 63.0
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 5.4e-16 89.7 529 26.5
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 7.1e-16 89.4 546 27.3
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 7.1e-16 89.4 438 28.5
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 1.2e-15 88.6 515 26.6
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.2e-15 88.6 536 26.7
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 2.1e-15 87.8 540 26.1
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 3.5e-15 87.0 560 27.5
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 3.5e-15 87.0 560 26.6
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 3.5e-15 87.0 560 27.5
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 3.5e-15 87.0 548 28.6
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 3.5e-15 87.0 535 28.0
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 4.6e-15 86.7 530 27.4
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 7.8e-15 85.9 531 24.5
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.0e-14 85.5 530 27.2
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 1.3e-14 85.1 540 27.6
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.3e-14 85.1 510 26.5
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 1.7e-14 84.7 507 24.7
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 3.0e-14 84.0 458 28.2
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 3.9e-14 83.6 547 26.5
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 3.9e-14 83.6 512 27.0
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 3.9e-14 83.6 527 26.9
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 6.6e-14 82.8 560 25.9
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 6.6e-14 82.8 538 25.1
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 8.7e-14 82.4 529 27.2
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 8.7e-14 82.4 400 28.0
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 8.7e-14 82.4 538 27.1
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 1.5e-13 81.6 515 26.6
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 3.3e-13 80.5 546 25.6
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 5.6e-13 79.7 464 28.2
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 9.6e-13 79.0 568 26.6
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 9.6e-13 79.0 415 28.9
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 1.6e-12 78.2 519 27.2
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 2.1e-12 77.8 433 28.2
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 2.1e-12 77.8 538 26.4
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 2.8e-12 77.4 528 25.6
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 3.6e-12 77.0 566 24.0
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 8.1e-12 75.9 538 25.5
BcaC01g05490 Brassica carinata HOM05D041398 ORTHO05D032673 1.4e-11 75.1 63 65.1
C03p25880 Brassica napus HOM05D041398 ORTHO05D032673 1.4e-11 75.1 63 65.1
BolC3t14974H Brassica oleracea HOM05D041398 ORTHO05D032673 1.4e-11 75.1 63 65.1
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 1.4e-11 75.1 560 25.2
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 1.4e-11 75.1 530 24.7
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 1.8e-11 74.7 442 26.7
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 6.9e-11 72.8 548 25.4
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 6.9e-11 72.8 380 26.8
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 9.0e-11 72.4 502 26.9
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 1.5e-10 71.6 380 26.1
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 2.9e-09 67.4 578 24.9
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 3.8e-09 67.0 412 26.5
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 4.9e-09 66.6 443 25.5
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 8.4e-09 65.9 515 25.6
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 8.4e-09 65.9 529 25.0
BolC9t57600H Brassica oleracea HOM05D003079 ORTHO05D003461 1.1e-08 65.5 169 33.1
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 1.1e-08 65.5 557 24.4
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 1.4e-08 65.1 267 28.1
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 1.4e-08 65.1 524 23.9
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 1.9e-08 64.7 511 27.2
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 2.4e-08 64.3 491 25.5
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 2.4e-08 64.3 426 24.9
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 4.2e-08 63.5 382 26.4
BcaC04g20138 Brassica carinata HOM05D003079 ORTHO05D003461 1.2e-07 62.0 201 31.3
A10p13440 Brassica napus HOM05D003079 ORTHO05D003461 1.2e-07 62.0 170 32.4
BraA10t43447Z Brassica rapa HOM05D003079 ORTHO05D003461 1.2e-07 62.0 170 32.4
COL.COLO4_07791 Corchorus olitorius HOM05D003079 ORTHO05D003461 2.7e-07 60.8 143 35.0
Aqoxy4G02267 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 3.5e-07 60.5 502 23.3
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 4.6e-07 60.1 284 26.4
C09p47450 Brassica napus HOM05D003079 ORTHO05D003461 6.0e-07 59.7 202 30.2
CDE02G1968 Ceratophyllum demersum HOM05D000308 ORTHO05D003461 7.8e-07 59.3 378 25.1
CARHR269610 Cardamine hirsuta HOM05D003079 ORTHO05D003461 1.0e-06 58.9 196 27.6
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.7e-06 58.2 362 26.2
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 1.7e-06 58.2 473 23.9
TAR626G0479 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.7e-06 58.2 125 37.6
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 2.3e-06 57.8 513 24.4
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 3.0e-06 57.4 438 24.9
BcaB08g35981 Brassica carinata HOM05D003079 ORTHO05D003461 3.0e-06 57.4 221 28.1
Dinv19642 Davidia involucrata HOM05D003079 ORTHO05D003461 8.7e-06 55.8 150 34.7


User provided reference genes

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