Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48248 Brassica carinata HOM05D011886 ORTHO05D019856 5.2e-60 234.2 119 100.0
BolC1t05209H Brassica oleracea HOM05D011886 ORTHO05D019856 4.6e-48 194.5 114 88.6
C02p29160 Brassica napus HOM05D011886 ORTHO05D019856 5.6e-46 187.6 112 85.7
C04p41250 Brassica napus HOM05D011886 ORTHO05D019856 2.6e-43 178.7 107 85.0
BolC4t25703H Brassica oleracea HOM05D011886 ORTHO05D019856 2.6e-43 178.7 107 85.0
BcaC02g09309 Brassica carinata HOM05D011886 ORTHO05D019856 4.5e-43 177.9 107 85.0
BcaC03g18359 Brassica carinata HOM05D011886 ORTHO05D019856 2.9e-34 148.7 122 65.6
BolC2t08965H Brassica oleracea HOM05D011886 ORTHO05D041237 4.5e-27 124.8 69 91.3
C01p52720 Brassica napus HOM05D011886 ORTHO05D041237 1.1e-25 120.2 69 88.4
BcaC03g15304 Brassica carinata HOM05D011886 ORTHO05D094296 6.9e-12 74.3 47 72.3
A05p14060 Brassica napus HOM05D030149 ORTHO05D099036 1.2e-08 63.5 52 65.4
AL5G33760 Arabidopsis lyrata HOM05D001017 ORTHO05D001025 1.4e-07 60.1 99 46.5
BcaC02g07586 Brassica carinata HOM05D001017 ORTHO05D001025 1.4e-07 60.1 108 43.5
Thhalv10010378m.g Eutrema salsugineum HOM05D001017 ORTHO05D001025 1.8e-07 59.7 101 45.5
BcaB06g28952 Brassica carinata HOM05D001017 ORTHO05D001025 2.3e-07 59.3 100 46.0
AL4G32710 Arabidopsis lyrata HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
BcaB01g03831 Brassica carinata HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
BcaB02g09348 Brassica carinata HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
BcaB06g28950 Brassica carinata HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
BcaC02g11771 Brassica carinata HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
A03p20180 Brassica napus HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
A04p28030 Brassica napus HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
A05p09270 Brassica napus HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
C03p23630 Brassica napus HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
C04p11570 Brassica napus HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
C04p65430 Brassica napus HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
BolC3t14758H Brassica oleracea HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
BolC4t22805H Brassica oleracea HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
BolC4t28032H Brassica oleracea HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
BraA03t11268Z Brassica rapa HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
BraA04t18290Z Brassica rapa HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
BraA05t19884Z Brassica rapa HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
Carub.0004s1833 Capsella rubella HOM05D001017 ORTHO05D001025 3.0e-07 58.9 101 45.5
AT2G36530 Arabidopsis thaliana HOM05D001017 ORTHO05D001025 3.9e-07 58.5 101 44.6
Thhalv10010379m.g Eutrema salsugineum HOM05D001017 ORTHO05D001025 3.9e-07 58.5 101 44.6
Aa31LG5G21750 Aethionema arabicum HOM05D001017 ORTHO05D001025 5.1e-07 58.2 99 45.5
CARHR130820 Cardamine hirsuta HOM05D001017 ORTHO05D001025 5.1e-07 58.2 99 45.5
CARHR162840 Cardamine hirsuta HOM05D001017 ORTHO05D001025 5.1e-07 58.2 99 45.5
Os03g0248600 Oryza sativa ssp. japonica HOM05D001017 ORTHO05D001025 5.1e-07 58.2 96 44.8
Sp4g18820 Schrenkiella parvula HOM05D001017 ORTHO05D001025 5.1e-07 58.2 99 45.5
Atru.chr1.638 Acer truncatum HOM05D001017 ORTHO05D001025 6.7e-07 57.8 98 43.9
Gohir.A09G136500 Gossypium hirsutum HOM05D001017 ORTHO05D001025 6.7e-07 57.8 96 43.8
Duzib093G1966 Durio zibethinus HOM05D001017 ORTHO05D001025 8.8e-07 57.4 96 45.8
Sp5g09370 Schrenkiella parvula HOM05D001017 ORTHO05D001025 8.8e-07 57.4 99 43.4
vmacro07370 Vaccinium macrocarpon HOM05D001017 ORTHO05D001025 8.8e-07 57.4 93 45.2
Carub.0005s1944 Capsella rubella HOM05D001017 ORTHO05D001025 1.1e-06 57.0 99 44.4
Gohir.A01G209600 Gossypium hirsutum HOM05D001017 ORTHO05D001025 1.1e-06 57.0 97 44.3
Gohir.D01G198700 Gossypium hirsutum HOM05D001017 ORTHO05D001025 1.1e-06 57.0 97 44.3
Gohir.D09G137900 Gossypium hirsutum HOM05D001017 ORTHO05D001025 1.1e-06 57.0 96 45.8
Gorai.002G243100 Gossypium raimondii HOM05D001017 ORTHO05D001025 1.1e-06 57.0 97 44.3
Gorai.006G158500 Gossypium raimondii HOM05D001017 ORTHO05D001025 1.1e-06 57.0 96 45.8
Os06g0136600 Oryza sativa ssp. japonica HOM05D001017 ORTHO05D001025 1.1e-06 57.0 96 43.8
THA.LOC104805113 Tarenaya hassleriana HOM05D001017 ORTHO05D001025 1.1e-06 57.0 98 44.9
HPP92_014950 Vanilla planifolia HOM05D001017 ORTHO05D001025 1.1e-06 57.0 94 44.7
HPP92_014979 Vanilla planifolia HOM05D001017 ORTHO05D001025 1.1e-06 57.0 94 44.7
Dinv28536 Davidia involucrata HOM05D001017 ORTHO05D001025 1.5e-06 56.6 96 45.8
BcaB01g00326 Brassica carinata HOM05D001017 ORTHO05D001025 2.0e-06 56.2 101 42.6
BolC8t50432H Brassica oleracea HOM05D001017 ORTHO05D001025 2.0e-06 56.2 101 43.6
Ca_25232_v3 Cicer arietinum L. HOM05D001017 ORTHO05D001025 2.0e-06 56.2 96 43.8
Hma1.2p1_0099F.1_g048930 Hydrangea macrophylla HOM05D001017 ORTHO05D001025 2.0e-06 56.2 96 44.8
Medtr6g060570 Medicago truncatula HOM05D001017 ORTHO05D001025 2.0e-06 56.2 96 43.8
Psat1g109840 Pisum sativum HOM05D001017 ORTHO05D001025 2.0e-06 56.2 96 43.8
Hund20469 Selenicereus undatus HOM05D001017 ORTHO05D001025 2.0e-06 56.2 94 43.6
Hund20471 Selenicereus undatus HOM05D001017 ORTHO05D001025 2.0e-06 56.2 94 43.6
TWI39G0049 Tripterygium wilfordii HOM05D001017 ORTHO05D001025 2.0e-06 56.2 94 45.7
arahy.Tifrunner.gnm1.ann1.7M2AWM Arachis hypogaea HOM05D001017 ORTHO05D001025 2.6e-06 55.8 94 44.7
arahy.Tifrunner.gnm1.ann1.ELJ55T Arachis hypogaea HOM05D001017 ORTHO05D001025 2.6e-06 55.8 94 44.7
BcaC07g39657 Brassica carinata HOM05D001017 ORTHO05D001025 2.6e-06 55.8 101 43.6
C08p28200 Brassica napus HOM05D001017 ORTHO05D001025 2.6e-06 55.8 101 43.6
CANSAT80G1984 Cannabis sativa HOM05D001017 ORTHO05D001025 2.6e-06 55.8 94 44.7
Cpa.g.sc3.274 Carica papaya HOM05D001017 ORTHO05D001025 2.6e-06 55.8 99 43.4
Duzib106G0355 Durio zibethinus HOM05D001017 ORTHO05D001025 2.6e-06 55.8 96 44.8
FAN10G2671 Fragaria x ananassa HOM05D001017 ORTHO05D001025 2.6e-06 55.8 96 42.7
Glyma.09G153900 Glycine max HOM05D001017 ORTHO05D001025 2.6e-06 55.8 94 44.7
Glyma.16G204600 Glycine max HOM05D001017 ORTHO05D001025 2.6e-06 55.8 94 44.7
Lj2g0007326 Lotus japonicus HOM05D001017 ORTHO05D001025 2.6e-06 55.8 94 44.7
Rhsim03G0171300 Rhododendron simsii HOM05D001017 ORTHO05D001025 2.6e-06 55.8 96 44.8
RcHm_v2.0_Chr1g0375091 Rosa chinensis HOM05D001017 ORTHO05D001025 2.6e-06 55.8 96 42.7
THA.LOC104827486 Tarenaya hassleriana HOM05D001017 ORTHO05D001025 2.6e-06 55.8 96 45.8
TPR.G35255 Trifolium pratense HOM05D001017 ORTHO05D001025 2.6e-06 55.8 94 45.7
vmacro06768 Vaccinium macrocarpon HOM05D001017 ORTHO05D001025 2.6e-06 55.8 96 44.8
CiPaw.10G004800 Carya illinoinensis HOM05D001017 ORTHO05D001025 3.3e-06 55.5 105 41.9
COL.COLO4_29824 Corchorus olitorius HOM05D001017 ORTHO05D001025 3.3e-06 55.5 96 44.8
FAN06G2121 Fragaria x ananassa HOM05D001017 ORTHO05D001025 3.3e-06 55.5 96 41.7
Lalb_Chr03g0033121 Lupinus albus HOM05D001017 ORTHO05D001025 3.3e-06 55.5 96 44.8
Lalb_Chr19g0131331 Lupinus albus HOM05D001017 ORTHO05D001025 3.3e-06 55.5 96 44.8
Medtr7g103620 Medicago truncatula HOM05D001017 ORTHO05D001025 3.3e-06 55.5 94 45.7
Prupe.2G281900 Prunus persica HOM05D001017 ORTHO05D001025 3.3e-06 55.5 96 44.8
Rhsim03G0081900 Rhododendron simsii HOM05D001017 ORTHO05D001025 3.3e-06 55.5 97 44.3
TPR.G28360 Trifolium pratense HOM05D001017 ORTHO05D001025 3.3e-06 55.5 94 45.7
TAR375G0781 Trochodendron aralioides HOM05D001017 ORTHO05D001025 3.3e-06 55.5 94 45.7
Zm00001eb026940 Zea mays HOM05D001017 ORTHO05D001025 3.3e-06 55.5 94 44.7
Actinidia13555 Actinidia chinensis HOM05D001017 ORTHO05D001025 4.4e-06 55.1 102 41.2
CSS0039585 Camellia sinensis var. sinensis HOM05D001017 ORTHO05D001025 4.4e-06 55.1 96 43.8
CSS0045082 Camellia sinensis var. sinensis HOM05D001017 ORTHO05D001025 4.4e-06 55.1 96 43.8
CiPaw.04G062700 Carya illinoinensis HOM05D001017 ORTHO05D001025 4.4e-06 55.1 97 43.3
FAN14G0261 Fragaria x ananassa HOM05D001017 ORTHO05D001025 4.4e-06 55.1 91 44.0
MBI04_g35279_MAGBIO Magnolia biondii HOM05D001017 ORTHO05D001025 4.4e-06 55.1 94 44.7
MD01G1185500 Malus domestica HOM05D001017 ORTHO05D001025 4.4e-06 55.1 96 43.8
Nn1g01228 Nelumbo nucifera HOM05D001017 ORTHO05D001025 4.4e-06 55.1 98 42.9
Nitab4.5_0000132g0250 Nicotiana tabacum HOM05D001017 ORTHO05D001025 4.4e-06 55.1 97 44.3
Nitab4.5_0005504g0040 Nicotiana tabacum HOM05D001017 ORTHO05D001025 4.4e-06 55.1 97 44.3
PSO339G3997 Papaver somniferum HOM05D001017 ORTHO05D001025 4.4e-06 55.1 94 44.7
PSO384G0146 Papaver somniferum HOM05D001017 ORTHO05D001025 4.4e-06 55.1 94 44.7
Zm00001eb377870 Zea mays HOM05D001017 ORTHO05D001025 4.4e-06 55.1 96 42.7
ATR0810G114 Amborella trichopoda HOM05D001017 ORTHO05D001025 5.7e-06 54.7 94 43.6
ECA248G3062 Erigeron canadensis HOM05D001017 ORTHO05D001025 5.7e-06 54.7 94 44.7
FvH4_7g28150 Fragaria vesca HOM05D001017 ORTHO05D001025 5.7e-06 54.7 94 42.6
HanXRQChr01g0028341 Helianthus annuus HOM05D001017 ORTHO05D001025 5.7e-06 54.7 94 44.7
Thecc.05G080300 Theobroma cacao HOM05D001017 ORTHO05D001025 5.7e-06 54.7 96 43.8
Aqoxy7G00624 Aquilegia oxysepala HOM05D001017 ORTHO05D001025 7.4e-06 54.3 96 44.8
CANSAT56G2919 Cannabis sativa HOM05D001017 ORTHO05D001025 7.4e-06 54.3 94 44.7
CANSAT56G4362 Cannabis sativa HOM05D001017 ORTHO05D001025 7.4e-06 54.3 94 44.7
Os10g0167300 Oryza sativa ssp. japonica HOM05D001017 ORTHO05D001025 7.4e-06 54.3 96 41.7
Peaxi162Scf00110g01814 Petunia axillaris HOM05D001017 ORTHO05D001025 7.4e-06 54.3 97 43.3
PGR004G2140 Punica granatum HOM05D001017 ORTHO05D001025 7.4e-06 54.3 94 44.7
Cfa008227 Carpinus fangiana HOM05D001017 ORTHO05D001025 9.7e-06 53.9 98 40.8
Cc06_g05150 Coffea canephora HOM05D001017 ORTHO05D001025 9.7e-06 53.9 97 43.3
ECA232G2607 Erigeron canadensis HOM05D001017 ORTHO05D001025 9.7e-06 53.9 94 43.6
HanXRQChr16g0512701 Helianthus annuus HOM05D001017 ORTHO05D001025 9.7e-06 53.9 94 43.6
Lsat_1_v5_gn_1_50300 Lactuca sativa HOM05D001017 ORTHO05D001025 9.7e-06 53.9 94 44.7
Psat3g036800 Pisum sativum HOM05D001017 ORTHO05D001025 9.7e-06 53.9 94 44.7
SalBow3G2455 Salvia bowleyana HOM05D001017 ORTHO05D001025 9.7e-06 53.9 97 43.3
Sed0026371 Sechium edule HOM05D001017 ORTHO05D001025 9.7e-06 53.9 94 45.7


User provided reference genes

Program Settings