Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48240 Brassica carinata HOM05D007888 ORTHO05D009976 8.6e-90 333.6 161 100.0
BolC1t05220H Brassica oleracea HOM05D007888 ORTHO05D009976 1.8e-87 325.9 160 97.5
C01p52850 Brassica napus HOM05D007888 ORTHO05D009976 5.8e-86 320.9 161 96.3
C01p52830 Brassica napus HOM05D007888 ORTHO05D009976 1.3e-85 319.7 161 95.7
BolC1t05218H Brassica oleracea HOM05D007888 ORTHO05D009976 1.3e-85 319.7 160 95.0
C01p52800 Brassica napus HOM05D007888 ORTHO05D009976 1.7e-85 319.3 160 94.4
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 3.7e-85 318.2 161 95.0
C01p52840 Brassica napus HOM05D007888 ORTHO05D009976 3.7e-85 318.2 160 95.0
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 3.7e-85 318.2 161 95.0
BolC1t05223H Brassica oleracea HOM05D007888 ORTHO05D009976 4.9e-85 317.8 161 95.7
C01p52820 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-84 316.6 160 95.0
BolC1t05219H Brassica oleracea HOM05D007888 ORTHO05D009976 1.1e-84 316.6 160 95.0
BolC1t05221H Brassica oleracea HOM05D007888 ORTHO05D009976 1.2e-83 313.2 160 93.8
BcaC09g48237 Brassica carinata HOM05D007888 ORTHO05D009976 1.3e-82 309.7 160 92.5
BolC1t05222H Brassica oleracea HOM05D007888 ORTHO05D009976 2.3e-82 308.9 164 92.1
BcaC09g48239 Brassica carinata HOM05D007888 ORTHO05D009976 3.9e-82 308.1 153 96.7
C01p52790 Brassica napus HOM05D007888 ORTHO05D009976 1.9e-76 289.3 141 98.6
BcaC09g48238 Brassica carinata HOM05D007888 ORTHO05D009976 4.6e-75 284.6 153 91.5
BolC1t05217H Brassica oleracea HOM05D007888 ORTHO05D009976 7.8e-75 283.9 141 97.2
BolC1t05244H Brassica oleracea HOM05D007888 ORTHO05D009976 2.3e-66 255.8 158 78.5
C01p53000 Brassica napus HOM05D007888 ORTHO05D009976 6.6e-66 254.2 158 78.5
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 9.9e-62 240.4 162 72.8
BolC1t05230H Brassica oleracea HOM05D007888 ORTHO05D009976 4.9e-61 238.0 163 72.4
C01p52980 Brassica napus HOM05D007888 ORTHO05D009976 5.4e-60 234.6 164 73.8
BolC1t05238H Brassica oleracea HOM05D007888 ORTHO05D009976 2.1e-59 232.6 163 73.6
BcaB04g21088 Brassica carinata HOM05D007888 ORTHO05D009976 6.0e-59 231.1 161 71.4
BcaC01g00727 Brassica carinata HOM05D007888 ORTHO05D009976 2.3e-58 229.2 157 73.2
BcaC09g48217 Brassica carinata HOM05D007888 ORTHO05D009976 9.6e-57 223.8 160 69.4
BolC1t05261H Brassica oleracea HOM05D007888 ORTHO05D009976 9.6e-57 223.8 160 69.4
BcaC09g48231 Brassica carinata HOM05D007888 ORTHO05D009976 1.6e-56 223.0 155 72.9
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 5.3e-55 218.0 161 67.1
BolC1t05231H Brassica oleracea HOM05D007888 ORTHO05D009976 7.6e-54 214.2 155 69.7
BolC1t05233H Brassica oleracea HOM05D007888 ORTHO05D009976 1.7e-53 213.0 150 70.0
C01p52960 Brassica napus HOM05D007888 ORTHO05D009976 2.9e-53 212.2 150 70.0
BolC1t05234H Brassica oleracea HOM05D007888 ORTHO05D009976 2.9e-53 212.2 150 70.0
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 3.8e-53 211.8 158 64.6
BolC1t05232H Brassica oleracea HOM05D007888 ORTHO05D009976 4.9e-53 211.5 150 70.0
BolC1t05235H Brassica oleracea HOM05D007888 ORTHO05D009976 8.4e-53 210.7 150 69.3
BolC1t05237H Brassica oleracea HOM05D007888 ORTHO05D009976 3.2e-52 208.8 150 69.3
BcaC07g40200 Brassica carinata HOM05D007888 ORTHO05D009976 2.1e-51 206.1 158 66.5
C01p52940 Brassica napus HOM05D007888 ORTHO05D009976 4.6e-51 204.9 150 68.7
BolC1t05236H Brassica oleracea HOM05D007888 ORTHO05D009976 3.9e-50 201.8 150 67.3
C01p53150 Brassica napus HOM05D007888 ORTHO05D009976 1.9e-49 199.5 134 72.4
BcaB03g11708 Brassica carinata HOM05D007888 ORTHO05D009976 2.8e-48 195.7 157 65.6
Thhalv10005636m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 1.1e-44 183.7 160 59.4
A06p13980 Brassica napus HOM05D007888 ORTHO05D009976 7.9e-35 151.0 112 65.2
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 3.0e-34 149.1 154 50.6
Sp4g04740 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.1e-33 147.1 154 50.0
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 1.4e-31 140.2 152 49.3
C01p53160 Brassica napus HOM05D007888 ORTHO05D009976 2.2e-29 132.9 82 76.8
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 2.9e-29 132.5 154 44.8
C01p52970 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-28 130.6 93 67.7
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.9e-28 129.8 154 44.8
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.7e-27 125.9 154 43.5
AL4G10980 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 3.6e-27 125.6 154 43.5
Sp4g04710 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.1e-25 120.6 132 47.7
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.5e-25 119.4 154 41.6
AT2G21727 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 3.3e-25 119.0 150 43.3
AL4G16900 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 9.7e-25 117.5 153 41.2
BcaB07g29934 Brassica carinata HOM05D007888 ORTHO05D009976 2.2e-24 116.3 158 38.6
AT3G01185 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 8.2e-24 114.4 145 41.4
BcaC03g17926 Brassica carinata HOM05D007888 ORTHO05D009976 8.2e-24 114.4 159 41.5
C02p59850 Brassica napus HOM05D007888 ORTHO05D009976 8.2e-24 114.4 159 41.5
BolC2t12043H Brassica oleracea HOM05D007888 ORTHO05D009976 8.2e-24 114.4 159 41.5
Carub.0003s0096 Capsella rubella HOM05D007888 ORTHO05D009976 8.2e-24 114.4 153 43.1
A02p39970 Brassica napus HOM05D007888 ORTHO05D009976 6.9e-23 111.3 159 40.3
BraA02t08959Z Brassica rapa HOM05D007888 ORTHO05D009976 6.9e-23 111.3 159 40.3
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 7.7e-22 107.8 145 40.7
AT2G25482 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.0e-21 107.5 153 38.6
CARHR112800 Cardamine hirsuta HOM05D007888 ORTHO05D009976 1.0e-21 107.5 148 35.1
BraA06t26681Z Brassica rapa HOM05D007888 ORTHO05D009976 1.6e-19 100.1 97 55.7
Carub.0004s0517 Capsella rubella HOM05D007888 ORTHO05D009976 2.7e-19 99.4 151 35.8
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 7.9e-19 97.8 149 36.2
Carub.0004s0516 Capsella rubella HOM05D007888 ORTHO05D009976 2.6e-17 92.8 150 34.7
Sp4g04700 Schrenkiella parvula HOM05D007888 ORTHO05D009976 9.7e-17 90.9 116 40.5
Thhalv10005295m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 1.8e-15 86.7 154 34.4
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.2e-14 84.0 142 31.7
Carub.0004s0518 Capsella rubella HOM05D007888 ORTHO05D009976 7.7e-14 81.3 112 34.8
C01p52920 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-12 77.4 82 50.0
C01p52930 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-12 77.4 82 50.0
C01p52950 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-12 77.4 82 50.0
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.4e-12 77.0 137 29.2
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.6e-11 73.6 143 30.1
CARHR112790 Cardamine hirsuta HOM05D007888 ORTHO05D009976 3.6e-11 72.4 75 42.7
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.0e-09 66.6 135 28.9
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 3.3e-09 65.9 142 29.6
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 4.4e-09 65.5 155 26.5
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 4.4e-09 65.5 138 29.7
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.7e-09 65.1 116 33.6
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 7.4e-09 64.7 139 28.1
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.7e-08 63.5 116 31.9
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.2e-08 63.2 117 31.6
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.2e-08 63.2 124 29.8
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 2.2e-08 63.2 164 23.2
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 2.2e-08 63.2 142 25.4
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 4.8e-08 62.0 125 23.2
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 8.2e-08 61.2 149 30.9
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.1e-07 60.8 151 27.8
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.1e-07 60.8 151 27.8
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.1e-07 60.8 151 25.2
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.8e-07 60.1 149 29.5
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.4e-07 59.7 114 29.8
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 3.1e-07 59.3 134 26.9
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.1e-07 58.9 124 28.2
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.2e-06 57.4 86 32.6
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.2e-06 57.4 86 32.6
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 1.2e-06 57.4 117 27.4
C07p40690 Brassica napus HOM05D007888 ORTHO05D009976 2.0e-06 56.6 45 60.0
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 2.0e-06 56.6 145 26.2
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 2.6e-06 56.2 158 21.5
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 7.7e-06 54.7 149 28.2
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 7.7e-06 54.7 149 28.2


User provided reference genes

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