Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48217 Brassica carinata HOM05D007888 ORTHO05D009976 1.1e-92 343.2 168 100.0
BolC1t05261H Brassica oleracea HOM05D007888 ORTHO05D009976 2.5e-92 342.0 167 100.0
BolC1t05244H Brassica oleracea HOM05D007888 ORTHO05D009976 1.1e-63 246.9 165 75.2
C01p53000 Brassica napus HOM05D007888 ORTHO05D009976 5.5e-63 244.6 165 74.5
C01p52830 Brassica napus HOM05D007888 ORTHO05D009976 1.4e-58 229.9 160 71.9
BolC1t05218H Brassica oleracea HOM05D007888 ORTHO05D009976 3.1e-58 228.8 160 71.2
C01p52800 Brassica napus HOM05D007888 ORTHO05D009976 4.1e-58 228.4 160 70.6
BolC1t05220H Brassica oleracea HOM05D007888 ORTHO05D009976 4.1e-58 228.4 160 71.2
C01p52850 Brassica napus HOM05D007888 ORTHO05D009976 5.3e-58 228.0 160 71.2
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 9.0e-58 227.3 160 71.2
C01p52840 Brassica napus HOM05D007888 ORTHO05D009976 9.0e-58 227.3 160 71.2
C01p53150 Brassica napus HOM05D007888 ORTHO05D009976 9.0e-58 227.3 137 81.0
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 1.2e-57 226.9 160 71.2
BcaB04g21088 Brassica carinata HOM05D007888 ORTHO05D009976 2.0e-57 226.1 165 67.9
BolC1t05223H Brassica oleracea HOM05D007888 ORTHO05D009976 4.5e-57 224.9 160 70.6
BolC1t05221H Brassica oleracea HOM05D007888 ORTHO05D009976 1.3e-56 223.4 159 70.4
BolC1t05230H Brassica oleracea HOM05D007888 ORTHO05D009976 1.3e-56 223.4 161 68.9
C01p52820 Brassica napus HOM05D007888 ORTHO05D009976 2.9e-56 222.2 160 70.0
BolC1t05219H Brassica oleracea HOM05D007888 ORTHO05D009976 2.9e-56 222.2 160 70.0
BcaC09g48237 Brassica carinata HOM05D007888 ORTHO05D009976 6.5e-56 221.1 160 70.0
BcaC09g48240 Brassica carinata HOM05D007888 ORTHO05D009976 8.5e-56 220.7 160 69.4
BolC1t05222H Brassica oleracea HOM05D007888 ORTHO05D009976 1.1e-55 220.3 162 68.5
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 9.4e-55 217.2 163 65.6
BcaC09g48239 Brassica carinata HOM05D007888 ORTHO05D009976 2.7e-54 215.7 156 69.2
C01p52980 Brassica napus HOM05D007888 ORTHO05D009976 2.7e-54 215.7 162 67.9
BolC1t05238H Brassica oleracea HOM05D007888 ORTHO05D009976 3.0e-53 212.2 162 66.7
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 2.0e-52 209.5 160 63.1
BcaC01g00727 Brassica carinata HOM05D007888 ORTHO05D009976 2.5e-52 209.1 159 66.7
BcaC09g48231 Brassica carinata HOM05D007888 ORTHO05D009976 1.3e-51 206.8 156 64.7
C01p52960 Brassica napus HOM05D007888 ORTHO05D009976 1.4e-50 203.4 152 67.8
BolC1t05234H Brassica oleracea HOM05D007888 ORTHO05D009976 1.4e-50 203.4 152 67.8
BolC1t05233H Brassica oleracea HOM05D007888 ORTHO05D009976 2.4e-50 202.6 152 67.8
BcaC09g48238 Brassica carinata HOM05D007888 ORTHO05D009976 4.1e-50 201.8 153 68.0
BolC1t05235H Brassica oleracea HOM05D007888 ORTHO05D009976 4.1e-50 201.8 152 67.1
BolC1t05231H Brassica oleracea HOM05D007888 ORTHO05D009976 6.9e-50 201.1 157 66.2
BolC1t05232H Brassica oleracea HOM05D007888 ORTHO05D009976 1.2e-49 200.3 152 66.4
C01p52940 Brassica napus HOM05D007888 ORTHO05D009976 2.0e-49 199.5 152 67.1
BolC1t05237H Brassica oleracea HOM05D007888 ORTHO05D009976 4.5e-49 198.4 152 66.4
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 5.9e-49 198.0 165 61.8
BcaC07g40200 Brassica carinata HOM05D007888 ORTHO05D009976 2.2e-48 196.1 160 65.0
BolC1t05236H Brassica oleracea HOM05D007888 ORTHO05D009976 1.4e-47 193.4 152 65.1
C01p52790 Brassica napus HOM05D007888 ORTHO05D009976 3.6e-46 188.7 163 60.1
BolC1t05217H Brassica oleracea HOM05D007888 ORTHO05D009976 1.5e-44 183.3 163 58.9
Thhalv10005636m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 1.7e-43 179.9 164 56.1
C01p53160 Brassica napus HOM05D007888 ORTHO05D009976 4.8e-43 178.3 87 96.6
BcaB03g11708 Brassica carinata HOM05D007888 ORTHO05D009976 8.2e-43 177.6 159 60.4
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 4.5e-33 145.2 156 48.1
A06p13980 Brassica napus HOM05D007888 ORTHO05D009976 2.9e-32 142.5 114 63.2
Sp4g04740 Schrenkiella parvula HOM05D007888 ORTHO05D009976 6.5e-32 141.4 156 47.4
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 8.5e-32 141.0 154 49.4
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.1e-30 136.3 152 43.4
AL4G10980 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.4e-29 133.7 156 42.3
AT2G21727 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.4e-29 133.7 151 45.7
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 7.5e-28 127.9 157 44.6
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.3e-27 127.1 156 42.9
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 3.1e-26 122.5 156 41.0
C01p52970 Brassica napus HOM05D007888 ORTHO05D009976 4.1e-26 122.1 95 65.3
CARHR112800 Cardamine hirsuta HOM05D007888 ORTHO05D009976 9.1e-26 120.9 149 40.9
AL4G16900 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.5e-23 113.6 156 41.7
AT2G25482 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 4.2e-23 112.1 156 39.7
AT3G01185 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 6.1e-22 108.2 147 40.8
Sp4g04710 Schrenkiella parvula HOM05D007888 ORTHO05D009976 6.1e-22 108.2 134 44.8
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 6.8e-21 104.8 147 38.8
Carub.0003s0096 Capsella rubella HOM05D007888 ORTHO05D009976 2.6e-20 102.8 155 36.8
Thhalv10005295m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 9.8e-20 100.9 156 37.8
BcaC03g17926 Brassica carinata HOM05D007888 ORTHO05D009976 2.2e-19 99.8 161 38.5
C02p59850 Brassica napus HOM05D007888 ORTHO05D009976 2.2e-19 99.8 161 38.5
BolC2t12043H Brassica oleracea HOM05D007888 ORTHO05D009976 2.2e-19 99.8 161 38.5
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 3.7e-19 99.0 152 33.6
A02p39970 Brassica napus HOM05D007888 ORTHO05D009976 6.3e-19 98.2 161 37.9
BraA02t08959Z Brassica rapa HOM05D007888 ORTHO05D009976 6.3e-19 98.2 161 37.9
BcaB07g29934 Brassica carinata HOM05D007888 ORTHO05D009976 3.1e-18 95.9 161 32.9
Carub.0004s0517 Capsella rubella HOM05D007888 ORTHO05D009976 5.4e-18 95.1 153 35.3
Carub.0004s0516 Capsella rubella HOM05D007888 ORTHO05D009976 2.3e-16 89.7 153 34.6
BraA06t26681Z Brassica rapa HOM05D007888 ORTHO05D009976 1.9e-15 86.7 99 47.5
Carub.0004s0518 Capsella rubella HOM05D007888 ORTHO05D009976 2.8e-14 82.8 114 34.2
Sp4g04700 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.0e-13 80.9 118 38.1
C01p52920 Brassica napus HOM05D007888 ORTHO05D009976 2.3e-13 79.7 49 77.6
C01p52930 Brassica napus HOM05D007888 ORTHO05D009976 2.3e-13 79.7 49 77.6
C01p52950 Brassica napus HOM05D007888 ORTHO05D009976 2.3e-13 79.7 49 77.6
CARHR112790 Cardamine hirsuta HOM05D007888 ORTHO05D009976 4.4e-12 75.5 64 46.9
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 5.7e-12 75.1 147 29.9
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 1.7e-08 63.5 141 28.4
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 1.7e-08 63.5 126 31.0
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.9e-08 62.4 146 23.3
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.5e-07 60.5 146 24.7
Rhsim01G0015900 Rhododendron simsii HOM05D010700 ORTHO05D012225 1.5e-07 60.5 159 25.2
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 3.3e-07 59.3 104 26.9
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 4.3e-07 58.9 146 24.0
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.1e-06 56.6 148 25.0


User provided reference genes

Program Settings