Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48210 Brassica carinata HOM05D003641 ORTHO05D004915 1.6e-126 456.1 231 100.0
BcaB06g25550 Brassica carinata HOM05D003641 ORTHO05D004915 3.6e-89 332.0 242 76.0
CARHR086620 Cardamine hirsuta HOM05D003641 ORTHO05D004915 4.0e-88 328.6 250 72.8
AL3G23660 Arabidopsis lyrata HOM05D003641 ORTHO05D004915 4.4e-87 325.1 251 72.5
Aa31sc80G90 Aethionema arabicum HOM05D003641 ORTHO05D004915 2.8e-86 322.4 251 71.3
AT3G12050 Arabidopsis thaliana HOM05D003641 ORTHO05D004915 4.8e-86 321.6 251 71.7
BolC5t34243H Brassica oleracea HOM05D003641 ORTHO05D004915 1.1e-85 320.5 273 67.4
C05p55760 Brassica napus HOM05D003641 ORTHO05D004915 1.8e-85 319.7 248 72.6
Sp3g10280 Schrenkiella parvula HOM05D003641 ORTHO05D004915 7.0e-85 317.8 250 69.6
BraA05t22525Z Brassica rapa HOM05D003641 ORTHO05D004915 2.0e-84 316.2 242 73.6
A05p37290 Brassica napus HOM05D003641 ORTHO05D004915 4.5e-84 315.1 249 71.9
Thhalv10021006m.g Eutrema salsugineum HOM05D003641 ORTHO05D004915 1.2e-79 300.4 254 65.4
Carub.0003s1139 Capsella rubella HOM05D003641 ORTHO05D004915 7.5e-79 297.7 255 64.3
THA.LOC104826776 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 2.0e-76 289.7 247 65.2
Manes.09G037400 Manihot esculenta HOM05D003641 ORTHO05D004915 3.3e-74 282.3 242 62.8
THA.LOC104809934 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 3.3e-74 282.3 244 63.9
Atru.chr8.1148 Acer truncatum HOM05D003641 ORTHO05D004915 5.6e-74 281.6 246 61.4
Ciclev10012043m.g Citrus clementina HOM05D003641 ORTHO05D004915 7.3e-74 281.2 252 60.7
Thecc.05G174300 Theobroma cacao HOM05D003641 ORTHO05D004915 1.2e-73 280.4 249 61.8
MD14G1054700 Malus domestica HOM05D003641 ORTHO05D004915 2.8e-73 279.3 242 62.0
BcaC05g29294 Brassica carinata HOM05D003641 ORTHO05D004915 3.6e-73 278.9 221 70.6
Duzib093G1627 Durio zibethinus HOM05D003641 ORTHO05D004915 4.7e-73 278.5 244 61.5
Duzib128G0491 Durio zibethinus HOM05D003641 ORTHO05D004915 1.4e-72 276.9 244 60.2
CsaV3_3G038670 Cucumis sativus L. HOM05D003641 ORTHO05D004915 1.8e-72 276.6 245 61.6
Manes.08G042800 Manihot esculenta HOM05D003641 ORTHO05D004915 2.3e-72 276.2 241 61.4
Sabra16G0062900 Salix brachista HOM05D003641 ORTHO05D004915 4.0e-72 275.4 241 63.1
TWI74G1529 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 4.0e-72 275.4 237 62.9
Hund24813 Selenicereus undatus HOM05D003641 ORTHO05D004915 5.2e-72 275.0 242 60.7
Gorai.012G099600 Gossypium raimondii HOM05D003641 ORTHO05D004915 1.5e-71 273.5 246 60.6
TWI53G2154 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 2.0e-71 273.1 238 63.0
Oeu063867.1 Olea europaea HOM05D003641 ORTHO05D004915 3.4e-71 272.3 241 60.6
Sabra06G0149100 Salix brachista HOM05D003641 ORTHO05D004915 4.4e-71 271.9 241 62.2
Gohir.D04G089500 Gossypium hirsutum HOM05D003641 ORTHO05D004915 7.5e-71 271.2 246 60.2
PGSC0003DMG400011447 Solanum tuberosum HOM05D003641 ORTHO05D004915 7.5e-71 271.2 243 61.3
Haze_20012 Corylus avellana HOM05D003641 ORTHO05D004915 9.8e-71 270.8 241 59.8
EL10Ac3g06892 Beta vulgaris HOM05D003641 ORTHO05D004915 1.3e-70 270.4 237 62.4
CAN.G960.10 Capsicum annuum HOM05D003641 ORTHO05D004915 1.3e-70 270.4 249 61.4
DCAR_017036 Daucus carota HOM05D003641 ORTHO05D004915 1.3e-70 270.4 245 61.6
Cfa020150 Carpinus fangiana HOM05D003641 ORTHO05D004915 1.7e-70 270.0 241 59.8
FvH4_6g21990 Fragaria vesca HOM05D003641 ORTHO05D004915 1.7e-70 270.0 244 59.8
FAN14G0097 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.7e-70 270.0 244 59.8
PGR004G2452 Punica granatum HOM05D003641 ORTHO05D004915 3.7e-70 268.9 245 58.8
ClCG10G017650 Citrullus lanatus HOM05D003641 ORTHO05D004915 4.9e-70 268.5 243 59.3
Eucgr.A02465 Eucalyptus grandis HOM05D003641 ORTHO05D004915 4.9e-70 268.5 251 57.8
Gohir.A04G051900 Gossypium hirsutum HOM05D003641 ORTHO05D004915 6.4e-70 268.1 246 58.1
Ca_12045_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 8.3e-70 267.7 243 60.9
Sopen10g029550 Solanum pennellii HOM05D003641 ORTHO05D004915 8.3e-70 267.7 243 59.3
SGA_v2.0_scaffold105G30499 Striga asiatica HOM05D003641 ORTHO05D004915 1.1e-69 267.3 249 59.0
AUR62011998 Chenopodium quinoa HOM05D003641 ORTHO05D004915 1.4e-69 266.9 245 60.0
Nn7g35971 Nelumbo nucifera HOM05D003641 ORTHO05D004915 1.4e-69 266.9 244 59.4
Solyc10g078930.2 Solanum lycopersicum HOM05D003641 ORTHO05D004915 1.4e-69 266.9 243 59.7
COL.COLO4_29349 Corchorus olitorius HOM05D003641 ORTHO05D004915 1.9e-69 266.5 245 57.6
MELO3C009611.2 Cucumis melo HOM05D003641 ORTHO05D004915 1.9e-69 266.5 244 59.4
SalBow6G5303 Salvia bowleyana HOM05D003641 ORTHO05D004915 1.9e-69 266.5 244 59.0
CiPaw.09G029000 Carya illinoinensis HOM05D003641 ORTHO05D004915 2.4e-69 266.2 244 59.0
Ca_08533_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 4.1e-69 265.4 250 58.0
Potri.006G194400 Populus trichocarpa HOM05D003641 ORTHO05D004915 5.4e-69 265.0 241 61.0
CANSAT64G0207 Cannabis sativa HOM05D003641 ORTHO05D004915 1.6e-68 263.5 251 58.6
Sc13g0002360 Simmondsia chinensis HOM05D003641 ORTHO05D004915 1.6e-68 263.5 242 59.1
TPR.G30301 Trifolium pratense HOM05D003641 ORTHO05D004915 1.6e-68 263.5 241 58.1
TAR636G0728 Trochodendron aralioides HOM05D003641 ORTHO05D004915 1.6e-68 263.5 241 58.5
Lj2A365T90 Lonicera japonica HOM05D003641 ORTHO05D004915 2.0e-68 263.1 239 59.4
MD12G1055300 Malus domestica HOM05D003641 ORTHO05D004915 2.0e-68 263.1 242 58.7
Medtr0136s0060 Medicago truncatula HOM05D003641 ORTHO05D004915 2.0e-68 263.1 237 60.8
Cpa.g.sc85.60 Carica papaya HOM05D003641 ORTHO05D004915 2.7e-68 262.7 248 57.3
Potri.016G060100 Populus trichocarpa HOM05D003641 ORTHO05D004915 4.6e-68 261.9 246 60.2
Peaxi162Scf00258g00921 Petunia axillaris HOM05D003641 ORTHO05D004915 6.0e-68 261.5 244 58.6
RcHm_v2.0_Chr3g0479291 Rosa chinensis HOM05D003641 ORTHO05D004915 6.0e-68 261.5 242 58.7
FAN02G1826 Fragaria x ananassa HOM05D003641 ORTHO05D004915 7.8e-68 261.2 235 59.6
Prupe.7G080100 Prunus persica HOM05D003641 ORTHO05D004915 7.8e-68 261.2 245 58.4
AUR62015343 Chenopodium quinoa HOM05D003641 ORTHO05D004915 1.3e-67 260.4 228 61.0
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 1.7e-67 260.0 242 59.1
Nitab4.5_0007274g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 1.7e-67 260.0 243 58.0
Actinidia14376 Actinidia chinensis HOM05D003641 ORTHO05D004915 2.3e-67 259.6 244 59.4
QL07p024293 Quercus lobata HOM05D003641 ORTHO05D004915 2.3e-67 259.6 258 55.8
FAN09G3507 Fragaria x ananassa HOM05D003641 ORTHO05D004915 5.0e-67 258.5 240 58.3
HanXRQChr01g0010591 Helianthus annuus HOM05D003641 ORTHO05D004915 5.0e-67 258.5 246 58.9
FAN05G2657 Fragaria x ananassa HOM05D003641 ORTHO05D004915 6.6e-67 258.1 240 58.3
CDE05G2508 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 1.1e-66 257.3 244 57.0
Lj5g0013930 Lotus japonicus HOM05D003641 ORTHO05D004915 1.5e-66 256.9 246 58.1
Psat3g067000 Pisum sativum HOM05D003641 ORTHO05D004915 1.5e-66 256.9 246 56.9
Sed0007356 Sechium edule HOM05D003641 ORTHO05D004915 1.9e-66 256.5 243 58.0
SGA_v2.0_scaffold69G23056 Striga asiatica HOM05D003641 ORTHO05D004915 1.9e-66 256.5 247 56.3
Glyma.09G109200 Glycine max HOM05D003641 ORTHO05D004915 2.5e-66 256.1 245 58.0
CiPaw.10G025600 Carya illinoinensis HOM05D003641 ORTHO05D004915 3.3e-66 255.8 245 55.5
Glyma.03G146100 Glycine max HOM05D003641 ORTHO05D004915 4.3e-66 255.4 248 57.3
Oeu006209.1 Olea europaea HOM05D003641 ORTHO05D004915 4.3e-66 255.4 257 56.4
Lju124A24T32 Lonicera japonica HOM05D003641 ORTHO05D004915 7.3e-66 254.6 245 58.0
Lj1g0002782 Lotus japonicus HOM05D003641 ORTHO05D004915 7.3e-66 254.6 236 57.6
MSTRG.19915 Avicennia marina HOM05D003641 ORTHO05D004915 1.2e-65 253.8 245 56.7
Glyma.02G171100 Glycine max HOM05D003641 ORTHO05D004915 4.7e-65 251.9 242 57.9
TAR633G0428 Trochodendron aralioides HOM05D003641 ORTHO05D004915 4.7e-65 251.9 235 59.6
CSS0018208 Camellia sinensis var. sinensis HOM05D003641 ORTHO05D004915 8.0e-65 251.1 240 57.9
CDE11G0833 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 1.4e-64 250.4 241 56.0
Rhsim03G0004900 Rhododendron simsii HOM05D003641 ORTHO05D004915 1.4e-64 250.4 243 57.6
Cc06_g15710 Coffea canephora HOM05D003641 ORTHO05D004915 1.8e-64 250.0 247 56.3
MBI19_g17419_MAGBIO Magnolia biondii HOM05D003641 ORTHO05D004915 1.8e-64 250.0 241 56.4
Hund19209 Selenicereus undatus HOM05D003641 ORTHO05D004915 1.8e-64 250.0 241 55.6
arahy.Tifrunner.gnm1.ann1.G8NWJQ Arachis hypogaea HOM05D003641 ORTHO05D004915 2.3e-64 249.6 251 55.0
Glyma.19G149300 Glycine max HOM05D003641 ORTHO05D004915 2.3e-64 249.6 246 56.1
Hma1.2p1_0676F.1_g201930 Hydrangea macrophylla HOM05D003641 ORTHO05D004915 2.3e-64 249.6 242 57.4
ATR0598G178 Amborella trichopoda HOM05D003641 ORTHO05D004915 4.0e-64 248.8 242 57.0
arahy.Tifrunner.gnm1.ann1.86C462 Arachis hypogaea HOM05D003641 ORTHO05D004915 5.2e-64 248.4 253 53.8
Medtr7g093500 Medicago truncatula HOM05D003641 ORTHO05D004915 5.2e-64 248.4 248 55.6
VMungo0720G0815 Vigna mungo HOM05D003641 ORTHO05D004915 8.9e-64 247.7 244 54.9
Migut.J01850 Erythranthe guttata HOM05D003641 ORTHO05D004915 1.5e-63 246.9 249 53.4
PSO135G0566 Papaver somniferum HOM05D003641 ORTHO05D004915 1.5e-63 246.9 246 55.7
vmacro07894 Vaccinium macrocarpon HOM05D003641 ORTHO05D004915 1.5e-63 246.9 242 56.6
PSO724G0609 Papaver somniferum HOM05D003641 ORTHO05D004915 2.0e-63 246.5 249 56.6
Phvul.007G261100 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 2.0e-63 246.5 244 54.9
Dinv24057 Davidia involucrata HOM05D003641 ORTHO05D004915 2.6e-63 246.1 244 57.0
unitig_899.g15167 Utricularia gibba HOM05D003641 ORTHO05D004915 9.8e-63 244.2 241 55.2
Phvul.001G143800 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 1.3e-62 243.8 254 53.5
Aqoxy1G00140 Aquilegia oxysepala HOM05D003641 ORTHO05D004915 1.7e-62 243.4 250 55.2
Lalb_Chr18g0047991 Lupinus albus HOM05D003641 ORTHO05D004915 4.9e-62 241.9 249 55.8
Lsat_1_v5_gn_5_164500 Lactuca sativa HOM05D003641 ORTHO05D004915 6.4e-62 241.5 235 56.2
VMungo1383G0826 Vigna mungo HOM05D003641 ORTHO05D004915 1.4e-61 240.4 249 53.8
Gohir.D04G089400 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.9e-61 240.0 234 56.4
Nn7g35972 Nelumbo nucifera HOM05D003641 ORTHO05D004915 1.9e-61 240.0 242 54.5
Nitab4.5_0002343g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 4.1e-61 238.8 236 58.5
Nitab4.5_0000105g0210 Nicotiana tabacum HOM05D003641 ORTHO05D004915 4.6e-60 235.3 232 58.2
Zm00001eb037640 Zea mays HOM05D003641 ORTHO05D004915 6.0e-60 235.0 237 53.6
Os08g0464000 Oryza sativa ssp. japonica HOM05D003641 ORTHO05D004915 3.0e-59 232.6 245 51.8
Zm00001eb177410 Zea mays HOM05D003641 ORTHO05D004915 1.1e-58 230.7 245 51.8
SMO203G0054 Selaginella moellendorffii HOM05D003641 ORTHO05D004915 1.5e-58 230.3 241 51.0
HPP92_005766 Vanilla planifolia HOM05D003641 ORTHO05D004915 2.1e-57 226.5 252 49.6
unitig_746.g26803 Utricularia gibba HOM05D003641 ORTHO05D004915 2.8e-57 226.1 229 53.7
HPP92_009321 Vanilla planifolia HOM05D003641 ORTHO05D004915 6.2e-57 224.9 253 50.6
Nitab4.5_0001137g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 4.0e-56 222.2 242 52.5
Ah.04g152830 Amaranthus hybridus HOM05D003641 ORTHO05D004915 1.2e-55 220.7 224 54.5
Pp3c15_21400 Physcomitrium patens HOM05D003641 ORTHO05D004915 5.8e-55 218.4 245 50.6
GSVIVG01033476001 Vitis vinifera HOM05D003641 ORTHO05D004915 1.3e-54 217.2 144 72.9
Mapoly0109s0023 Marchantia polymorpha HOM05D003641 ORTHO05D004915 1.1e-53 214.2 246 50.4
Pp3c9_15400 Physcomitrium patens HOM05D003641 ORTHO05D004915 5.4e-53 211.8 244 48.8
Gorai.012G099500 Gossypium raimondii HOM05D003641 ORTHO05D004915 1.6e-52 210.3 196 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3694 Anthoceros agrestis HOM05D003641 ORTHO05D004915 1.5e-50 203.8 241 47.7
Actinidia32404 Actinidia chinensis HOM05D003641 ORTHO05D004915 9.5e-50 201.1 133 72.2
arahy.Tifrunner.gnm1.ann1.VQQW03 Arachis hypogaea HOM05D003641 ORTHO05D004915 1.8e-48 196.8 144 67.4
Gohir.A04G052000 Gossypium hirsutum HOM05D003641 ORTHO05D004915 9.9e-47 191.0 193 53.9
Psat6g123080 Pisum sativum HOM05D003641 ORTHO05D004915 4.3e-42 175.6 167 59.3
arahy.Tifrunner.gnm1.ann1.EPN7T6 Arachis hypogaea HOM05D003641 ORTHO05D004915 1.4e-40 170.6 162 54.9
Actinidia22049 Actinidia chinensis HOM05D003641 ORTHO05D004915 4.4e-39 165.6 229 46.7
TPR.G35793 Trifolium pratense HOM05D003641 ORTHO05D004915 3.1e-32 142.9 153 52.3
arahy.Tifrunner.gnm1.ann1.20Y790 Arachis hypogaea HOM05D003641 ORTHO05D004915 4.0e-24 115.9 101 58.4
PRCOL_00005901 Prasinoderma coloniale HOM05D003641 ORTHO05D004915 5.8e-23 112.1 242 33.1
Glyma.09G095600 Glycine max HOM05D003641 ORTHO05D004915 6.4e-22 108.6 133 45.9
Hund07686 Selenicereus undatus HOM05D003641 ORTHO05D011049 1.1e-21 107.8 153 43.1
MCO07G236 Micromonas commoda HOM05D003641 ORTHO05D004915 3.5e-20 102.8 243 32.1
SEGI_39925 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 5.1e-19 99.0 148 45.3
Dinv18651 Davidia involucrata HOM05D003641 ORTHO05D004915 8.7e-19 98.2 81 59.3
Dinv18648 Davidia involucrata HOM05D003641 ORTHO05D004915 4.3e-18 95.9 77 61.0
Dinv26263 Davidia involucrata HOM05D003641 ORTHO05D004915 4.3e-18 95.9 77 61.0
Ca_12039_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.6e-17 94.0 76 63.2
BolC1t05367H Brassica oleracea HOM05D003641 ORTHO05D038899 2.8e-17 93.2 49 83.7
arahy.Tifrunner.gnm1.ann1.XYD4PT Arachis hypogaea HOM05D003641 ORTHO05D038899 3.7e-17 92.8 64 64.1
SEGI_05882 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 4.0e-16 89.4 138 43.5
Cre03.g199300 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D004915 5.3e-16 89.0 141 33.3
Nn8g39306 Nelumbo nucifera HOM05D003641 ORTHO05D004915 4.5e-15 85.9 78 57.7
CBR_g18730 Chara braunii HOM05D003641 ORTHO05D004915 4.9e-14 82.4 73 57.5
Hund07687 Selenicereus undatus HOM05D003641 ORTHO05D021213 1.8e-08 63.9 166 34.3
Peaxi162Scf00003g04539 Petunia axillaris HOM05D000312 ORTHO05D000221 9.0e-08 61.6 49 59.2
Ca_03268_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 7.7e-07 58.5 46 56.5
CsaV3_5G015400 Cucumis sativus L. HOM05D003641 ORTHO05D004915 1.7e-06 57.4 68 44.1


User provided reference genes

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