Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 3.1e-102 375.2 196 100.0
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 2.0e-101 372.5 196 98.5
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 3.5e-101 371.7 196 99.0
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 7.7e-101 370.5 196 99.0
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 1.7e-100 369.4 196 98.0
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 1.5e-99 366.3 198 97.5
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 1.9e-99 365.9 197 98.0
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 1.9e-99 365.9 197 98.0
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 3.2e-99 365.2 197 98.0
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 1.2e-98 363.2 197 97.5
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 1.2e-96 356.7 197 96.4
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 2.6e-96 355.5 197 95.4
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 9.8e-96 353.6 197 94.9
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 1.7e-95 352.8 197 94.9
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 4.8e-95 351.3 197 93.9
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 6.3e-95 350.9 197 94.4
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 9.1e-94 347.1 197 92.9
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 9.1e-94 347.1 197 92.9
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 4.7e-90 334.7 197 89.3
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 1.4e-86 323.2 193 88.1
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 9.2e-86 320.5 196 85.2
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 2.0e-85 319.3 193 85.5
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 2.7e-85 318.9 197 86.8
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 2.7e-85 318.9 193 87.6
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 4.5e-85 318.2 193 86.5
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 4.5e-85 318.2 193 86.5
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 4.5e-85 318.2 194 86.6
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 5.9e-85 317.8 193 86.5
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 1.7e-84 316.2 193 86.0
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.9e-84 315.5 196 84.2
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 6.6e-84 314.3 193 85.5
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 1.9e-83 312.8 190 84.7
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 7.3e-83 310.8 193 85.5
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 1.2e-82 310.1 189 85.7
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 1.6e-82 309.7 193 85.0
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.6e-82 309.7 193 84.5
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 2.8e-82 308.9 193 84.5
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 2.8e-82 308.9 193 84.5
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 2.8e-82 308.9 190 82.6
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 2.8e-82 308.9 193 83.9
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 3.6e-82 308.5 193 83.9
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 3.6e-82 308.5 190 84.2
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 4.7e-82 308.1 189 84.7
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 6.1e-82 307.8 189 84.7
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 6.1e-82 307.8 193 83.9
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 8.0e-82 307.4 196 84.2
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 8.0e-82 307.4 189 84.7
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 1.0e-81 307.0 196 83.2
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 1.4e-81 306.6 190 83.7
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 1.4e-81 306.6 189 84.7
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 3.0e-81 305.4 189 84.1
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 4.0e-81 305.1 193 85.5
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 4.0e-81 305.1 189 83.6
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 6.8e-81 304.3 189 84.1
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 6.8e-81 304.3 193 82.9
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 6.8e-81 304.3 190 83.7
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 8.9e-81 303.9 193 83.9
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.2e-80 303.5 196 82.7
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 1.2e-80 303.5 189 83.1
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 1.5e-80 303.1 196 83.7
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 2.0e-80 302.8 193 81.9
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 2.6e-80 302.4 189 83.1
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 3.4e-80 302.0 196 83.7
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 9.8e-80 300.4 193 82.9
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 1.3e-79 300.1 193 81.3
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 1.7e-79 299.7 195 80.0
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 1.7e-79 299.7 193 82.9
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 1.7e-79 299.7 189 81.5
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 1.7e-79 299.7 189 81.5
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 1.7e-79 299.7 189 81.5
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 2.2e-79 299.3 191 82.7
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 3.7e-79 298.5 189 82.0
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 2.4e-78 295.8 178 85.4
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 5.4e-78 294.7 193 82.4
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 1.6e-77 293.1 197 79.2
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 2.0e-77 292.7 193 80.3
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 1.7e-76 289.7 193 81.3
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 1.7e-76 289.7 193 81.3
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 3.0e-76 288.9 196 78.6
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 3.9e-76 288.5 190 81.1
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 8.6e-76 287.3 194 77.8
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 3.3e-75 285.4 189 81.5
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 7.3e-75 284.3 190 80.0
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 9.5e-75 283.9 196 76.0
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 2.1e-74 282.7 196 78.1
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 2.8e-74 282.3 188 77.7
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 2.8e-74 282.3 196 76.0
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 2.8e-74 282.3 196 77.0
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 2.3e-73 279.3 188 76.6
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 1.5e-72 276.6 193 77.7
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 1.7e-71 273.1 190 78.9
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 3.7e-71 271.9 187 74.3
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 4.9e-71 271.6 197 75.6
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 4.9e-71 271.6 184 78.8
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 6.4e-71 271.2 197 72.1
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 5.4e-70 268.1 191 74.9
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 2.1e-69 266.2 188 75.0
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 3.0e-68 262.3 174 79.9
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 1.9e-67 259.6 190 75.8
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 7.3e-67 257.7 186 69.9
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 2.1e-66 256.1 185 70.8
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 8.9e-65 250.8 190 67.9
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 1.3e-63 246.9 197 70.1
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 1.4e-62 243.4 195 66.2
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 9.2e-62 240.7 197 64.0
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 2.1e-61 239.6 186 67.7
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 8.6e-60 234.2 205 61.0
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 1.9e-59 233.0 196 69.4
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 9.5e-59 230.7 136 86.8
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 2.1e-58 229.6 137 89.1
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 4.4e-56 221.9 185 59.5
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.4e-54 216.1 198 62.6
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 4.2e-54 215.3 137 83.2
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 4.7e-50 201.8 189 61.9
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 7.6e-48 194.5 167 66.5
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.9e-43 179.9 202 55.0
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 2.8e-42 176.0 123 79.7
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 1.7e-39 166.8 115 77.4
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 3.2e-38 162.5 122 71.3
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 4.2e-38 162.2 101 79.2
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 4.0e-33 145.6 166 45.2
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 3.2e-30 136.0 135 58.5
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 2.1e-29 133.3 107 69.2
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 5.1e-28 128.6 93 71.0
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 1.1e-27 127.5 106 67.0
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 4.2e-22 109.0 75 82.7
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 5.5e-22 108.6 78 74.4
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 5.7e-19 98.6 172 34.3
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.5e-16 90.5 79 67.1
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 2.2e-15 86.7 45 86.7
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 6.5e-15 85.1 162 33.3
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 3.3e-11 72.8 58 62.1
SGA_v2.0_scaffold131G34402 Striga asiatica HOM05D005910 ORTHO05D007088 8.5e-07 58.2 54 66.7
SGA_v2.0_scaffold472G52090 Striga asiatica HOM05D005910 ORTHO05D007088 1.4e-06 57.4 54 66.7


User provided reference genes

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