Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 3.9e-96 354.8 176 100.0
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 2.2e-86 322.4 160 100.0
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 1.1e-85 320.1 160 98.8
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 2.4e-61 239.2 177 69.5
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 1.6e-57 226.5 170 71.8
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.0e-51 207.2 174 59.2
BcaC05g29300 Brassica carinata HOM05D007923 ORTHO05D009651 3.9e-51 205.3 178 61.2
C05p55840 Brassica napus HOM05D007923 ORTHO05D009651 3.9e-51 205.3 178 61.2
BolC5t34253H Brassica oleracea HOM05D007923 ORTHO05D009651 3.9e-51 205.3 178 61.2
A05p37330 Brassica napus HOM05D007923 ORTHO05D009651 3.1e-48 195.7 178 60.1
BraA05t22530Z Brassica rapa HOM05D007923 ORTHO05D009651 3.1e-48 195.7 178 60.1
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.2e-47 193.7 174 58.6
BcaC05g29301 Brassica carinata HOM05D007923 ORTHO05D009651 2.0e-47 193.0 178 59.0
C05p55860 Brassica napus HOM05D007923 ORTHO05D009651 2.0e-47 193.0 178 59.0
BolC5t34255H Brassica oleracea HOM05D007923 ORTHO05D009651 2.0e-47 193.0 178 59.0
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 2.0e-47 193.0 176 59.1
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.7e-46 188.7 174 56.3
BraA05t22535Z Brassica rapa HOM05D007923 ORTHO05D009651 9.2e-45 184.1 161 59.6
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.5e-44 182.2 174 54.6
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 3.5e-44 182.2 160 59.4
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 3.5e-44 182.2 173 57.2
BcaB06g25567 Brassica carinata HOM05D007923 ORTHO05D009651 4.6e-44 181.8 163 58.9
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.9e-43 178.7 174 53.4
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 3.3e-42 175.6 161 58.4
BcaC05g29302 Brassica carinata HOM05D007923 ORTHO05D009651 5.6e-42 174.9 161 58.4
C05p55870 Brassica napus HOM05D007923 ORTHO05D009651 5.6e-42 174.9 161 58.4
BolC5t34256H Brassica oleracea HOM05D007923 ORTHO05D009651 5.6e-42 174.9 161 58.4
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.1e-41 172.9 167 52.1
A05p37340 Brassica napus HOM05D007923 ORTHO05D009651 8.1e-41 171.0 161 57.1
BraA05t22531Z Brassica rapa HOM05D007923 ORTHO05D009651 8.1e-41 171.0 161 57.1
BraA05t22533Z Brassica rapa HOM05D007923 ORTHO05D009651 1.8e-40 169.9 161 57.1
BcaC05g29304 Brassica carinata HOM05D007923 ORTHO05D009651 3.1e-40 169.1 161 56.5
C05p55880 Brassica napus HOM05D007923 ORTHO05D009651 3.1e-40 169.1 161 56.5
BolC5t34257H Brassica oleracea HOM05D007923 ORTHO05D009651 3.1e-40 169.1 161 56.5
BraA05t22534Z Brassica rapa HOM05D007923 ORTHO05D009651 5.2e-40 168.3 161 57.1
A05p37350 Brassica napus HOM05D007923 ORTHO05D009651 1.5e-39 166.8 161 55.9
BraA05t22532Z Brassica rapa HOM05D007923 ORTHO05D009651 1.5e-39 166.8 161 55.9
C05p55890 Brassica napus HOM05D007923 ORTHO05D009651 1.7e-38 163.3 161 54.7
BolC5t34258H Brassica oleracea HOM05D007923 ORTHO05D009651 1.7e-38 163.3 161 54.7
BcaC05g29305 Brassica carinata HOM05D007923 ORTHO05D009651 1.9e-37 159.8 147 55.8
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 2.3e-35 152.9 175 48.6
BcaC09g48207 Brassica carinata HOM05D007923 ORTHO05D009651 8.1e-33 144.4 158 53.8
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.4e-32 142.9 176 52.3
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.2e-31 140.6 173 43.9
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.7e-30 136.7 172 50.6
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.2e-30 136.3 172 51.2
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.8e-30 135.6 173 46.2
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.1e-29 134.0 173 49.7
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.6e-28 130.2 172 44.8
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.6e-28 130.2 172 43.6
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.0e-28 128.3 172 44.8
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.0e-27 127.5 172 43.0
AT1G47450 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.3e-27 127.1 175 45.7
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.3e-26 122.5 155 43.9
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.8e-24 116.7 217 36.4
C06p22200 Brassica napus HOM05D007923 ORTHO05D009651 2.4e-24 116.3 159 47.2
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.0e-23 113.2 163 35.0
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.4e-23 112.5 172 40.1
BolC6t37406H Brassica oleracea HOM05D007923 ORTHO05D009651 2.9e-22 109.4 159 45.9
BcaC08g44686 Brassica carinata HOM05D007923 ORTHO05D009651 3.2e-21 105.9 83 62.7
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.6e-20 103.6 156 39.7
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.1e-16 90.9 130 34.6
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 4.9e-14 82.0 121 33.1
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 8.4e-14 81.3 114 35.1
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 1.2e-12 77.4 99 38.4
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.6e-12 77.0 137 31.4
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.8e-11 73.6 137 29.2
C05p55900 Brassica napus HOM05D007923 ORTHO05D009651 1.8e-11 73.6 50 70.0
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.0e-11 72.8 159 25.8
BcaC08g44685 Brassica carinata HOM05D007923 ORTHO05D009651 3.0e-11 72.8 68 61.8
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 3.9e-11 72.4 161 26.7
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 6.7e-11 71.6 107 29.9
C05p55910 Brassica napus HOM05D007923 ORTHO05D009651 1.1e-10 70.9 67 58.2
BolC5t34259H Brassica oleracea HOM05D007923 ORTHO05D009651 1.1e-10 70.9 67 58.2
THA.LOC104803521 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.1e-10 70.9 139 32.4
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 7.4e-10 68.2 157 35.0
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.1e-09 66.6 156 33.3
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 1.8e-08 63.5 163 28.8
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 2.4e-08 63.2 99 28.3
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 4.5e-07 58.9 107 30.8
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 1.3e-06 57.4 78 35.9
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 2.2e-06 56.6 163 27.0
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 8.4e-06 54.7 166 22.3
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 8.4e-06 54.7 107 29.0
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 8.4e-06 54.7 83 31.3


User provided reference genes

Program Settings